Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 9.6e-111 404.1 298 100.0
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 2.5e-42 176.8 225 51.6
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 1.4e-40 171.0 227 52.9
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 3.8e-35 152.9 214 52.8
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 9.5e-34 148.3 223 44.4
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 1.6e-33 147.5 228 50.0
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 6.1e-33 145.6 223 46.6
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 6.8e-32 142.1 219 45.7
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 3.4e-31 139.8 221 43.0
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 7.5e-31 138.7 225 47.6
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 2.7e-28 130.2 223 43.0
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 1.0e-27 128.3 227 42.3
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 2.3e-27 127.1 228 41.7
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 5.0e-27 125.9 225 41.8
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 6.6e-27 125.6 227 41.0
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 8.6e-27 125.2 228 40.8
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 1.5e-26 124.4 228 40.4
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 2.5e-26 123.6 227 41.0
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 3.3e-26 123.2 222 47.3
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 5.6e-26 122.5 224 41.5
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 7.3e-26 122.1 227 40.5
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 7.3e-26 122.1 233 42.9
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 1.6e-25 120.9 214 44.4
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 2.1e-25 120.6 234 41.0
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 4.7e-25 119.4 222 44.6
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 6.2e-25 119.0 225 46.2
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 6.2e-25 119.0 227 40.1
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 6.2e-25 119.0 218 41.7
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 8.0e-25 118.6 225 43.1
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 1.4e-24 117.9 227 40.1
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 1.8e-24 117.5 227 41.0
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 6.8e-24 115.5 226 46.0
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.0e-23 114.0 223 39.9
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 1.3e-22 111.3 219 40.6
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 1.7e-22 110.9 222 39.6
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.2e-22 110.5 223 41.3
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.7e-22 109.8 229 38.0
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 4.9e-22 109.4 215 40.0
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 6.4e-22 109.0 228 41.7
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 6.4e-22 109.0 217 41.0
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.1e-21 108.2 227 38.3
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 1.1e-21 108.2 220 40.9
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 2.4e-21 107.1 229 41.0
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 2.4e-21 107.1 229 39.3
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 3.2e-21 106.7 215 39.5
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 5.4e-21 105.9 220 39.1
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 5.4e-21 105.9 227 41.0
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 7.0e-21 105.5 222 37.4
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.2e-20 104.8 226 38.5
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 1.6e-20 104.4 223 42.6
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 2.7e-20 103.6 227 41.0
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 3.5e-20 103.2 222 39.6
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 4.6e-20 102.8 223 36.3
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 4.6e-20 102.8 233 42.5
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 1.3e-19 101.3 221 43.4
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 3.0e-19 100.1 145 44.8
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 5.0e-19 99.4 225 37.3
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 8.6e-19 98.6 225 36.9
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.6e-17 94.4 221 35.7
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 4.7e-17 92.8 218 36.7
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 4.7e-17 92.8 224 39.3
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 2.3e-16 90.5 219 38.4
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 8.9e-16 88.6 220 34.5
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 1.2e-15 88.2 223 38.1
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 1.5e-15 87.8 194 34.5
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 2.0e-15 87.4 222 37.4
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 2.6e-15 87.0 223 38.6
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 7.5e-15 85.5 220 34.5
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 7.5e-15 85.5 220 34.5
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 1.7e-14 84.3 213 35.7
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 6.4e-14 82.4 220 38.2
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 6.4e-14 82.4 95 46.3
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 1.1e-13 81.6 226 36.3
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 1.4e-13 81.3 203 34.5
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 1.9e-13 80.9 223 36.3
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 2.4e-13 80.5 224 41.1
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 3.2e-13 80.1 224 41.1
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 5.4e-13 79.3 199 32.7
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 2.7e-12 77.0 224 37.5
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 2.7e-12 77.0 224 40.2
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 3.5e-12 76.6 226 36.7
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 7.8e-12 75.5 231 31.2
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 1.0e-11 75.1 220 33.2
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 1.7e-11 74.3 229 38.0
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 1.7e-11 74.3 223 35.0
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 3.9e-11 73.2 222 34.2
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 5.1e-11 72.8 226 38.1
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 8.6e-11 72.0 220 34.1
Peaxi162Scf00184g00001 Petunia axillaris HOM05D006310 ORTHO05D007768 8.6e-11 72.0 231 32.9
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 1.5e-10 71.2 52 63.5
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.5e-10 71.2 52 63.5
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.5e-10 71.2 52 63.5
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 1.9e-10 70.9 224 35.7
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 2.5e-10 70.5 188 31.9
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 2.5e-10 70.5 223 36.3
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 3.3e-10 70.1 220 34.1
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 5.6e-10 69.3 53 66.0
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 7.3e-10 68.9 216 38.0
Potri.018G130100 Populus trichocarpa HOM05D001903 ORTHO05D001847 9.5e-10 68.6 180 32.2
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.6e-09 67.8 52 61.5
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 1.6e-09 67.8 222 33.8
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.1e-09 67.4 52 61.5
Sabra18G0110600 Salix brachista HOM05D001903 ORTHO05D001847 3.6e-09 66.6 180 31.7
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 4.7e-09 66.2 51 60.8
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 8.1e-09 65.5 222 30.6
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 8.1e-09 65.5 46 63.0
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 1.1e-08 65.1 227 35.2
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 3.1e-08 63.5 224 36.6
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 6.8e-08 62.4 47 59.6
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 6.8e-08 62.4 44 63.6
Manes.06G057500 Manihot esculenta HOM05D001903 ORTHO05D001847 8.9e-08 62.0 179 34.1
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 1.5e-07 61.2 46 58.7
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 2.6e-07 60.5 41 65.9
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 3.4e-07 60.1 218 33.9
Haze_16546 Corylus avellana HOM05D001903 ORTHO05D001847 3.4e-07 60.1 88 53.4
Sabra18G0110800 Salix brachista HOM05D001903 ORTHO05D001847 4.4e-07 59.7 100 37.0
SEGI_10096 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 4.4e-07 59.7 51 52.9
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 5.8e-07 59.3 42 64.3
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 5.8e-07 59.3 216 33.8
Potri.006G068200 Populus trichocarpa HOM05D001903 ORTHO05D001847 5.8e-07 59.3 76 46.1
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 7.6e-07 58.9 52 53.8
Ca_21670_v3 Cicer arietinum L. HOM05D001903 ORTHO05D001847 1.3e-06 58.2 228 25.4
Nitab4.5_0006708g0010 Nicotiana tabacum HOM05D001903 ORTHO05D001847 2.2e-06 57.4 43 55.8
SEGI_00832 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 2.9e-06 57.0 35 65.7
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 3.8e-06 56.6 46 58.7
SEGI_10481 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 3.8e-06 56.6 41 61.0
Zm00001eb024820 Zea mays HOM05D006310 ORTHO05D007768 3.8e-06 56.6 37 62.2
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 4.9e-06 56.2 218 34.4
Duzib235G1087 Durio zibethinus HOM05D001903 ORTHO05D001847 4.9e-06 56.2 93 45.2
Peaxi162Scf00785g00317 Petunia axillaris HOM05D001903 ORTHO05D001847 4.9e-06 56.2 42 61.9
MD17G1210200 Malus domestica HOM05D001903 ORTHO05D001847 6.4e-06 55.8 52 51.9
RcHm_v2.0_Chr2g0135711 Rosa chinensis HOM05D001903 ORTHO05D001847 6.4e-06 55.8 44 59.1
SEGI_13914 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 6.4e-06 55.8 35 68.6
Manes.04G113400 Manihot esculenta HOM05D001903 ORTHO05D001847 8.4e-06 55.5 81 45.7
Sabra06G0050700 Salix brachista HOM05D001903 ORTHO05D001847 8.4e-06 55.5 179 31.3
SEGI_05294 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 8.4e-06 55.5 53 52.8


User provided reference genes

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