Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 2.7e-112 408.7 208 100.0
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.3e-106 389.8 208 93.3
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.7e-106 389.4 208 93.3
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 1.7e-106 389.4 208 94.2
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 2.2e-106 389.0 208 93.8
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 2.9e-106 388.7 208 92.8
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 3.8e-106 388.3 208 93.8
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 5.0e-106 387.9 208 93.8
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.1e-105 386.7 208 93.3
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.1e-105 386.7 208 93.8
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.9e-105 386.0 208 93.3
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 1.9e-105 386.0 208 92.8
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 2.5e-105 385.6 208 93.8
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 2.5e-105 385.6 208 92.8
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.2e-105 385.2 208 93.3
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 3.2e-105 385.2 208 93.3
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 4.2e-105 384.8 208 92.3
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 5.5e-105 384.4 208 92.8
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.5e-105 384.4 208 92.3
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 5.5e-105 384.4 208 92.8
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 5.5e-105 384.4 208 92.8
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 7.2e-105 384.0 208 92.8
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 7.2e-105 384.0 208 93.3
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 9.4e-105 383.6 208 92.3
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 1.2e-104 383.3 208 92.3
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 92.3
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 1.6e-104 382.9 208 92.8
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 2.7e-104 382.1 208 92.8
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 92.3
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 6.1e-104 380.9 206 92.7
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 6.1e-104 380.9 206 92.7
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 7.9e-104 380.6 208 91.3
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 1.4e-103 379.8 208 91.8
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.4e-103 379.8 208 91.8
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 3.0e-103 378.6 208 90.9
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 3.0e-103 378.6 208 91.8
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 3.0e-103 378.6 208 91.3
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 3.9e-103 378.3 207 91.3
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 3.9e-103 378.3 208 92.3
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 5.1e-103 377.9 206 91.7
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 6.7e-103 377.5 207 90.3
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 6.7e-103 377.5 208 91.3
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 8.8e-103 377.1 206 91.7
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 8.8e-103 377.1 206 91.3
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 1.1e-102 376.7 208 90.9
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 1.1e-102 376.7 210 91.4
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.5e-102 376.3 208 90.4
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 1.5e-102 376.3 208 89.4
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 1.5e-102 376.3 208 89.9
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 1.5e-102 376.3 208 91.3
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.9e-102 375.9 213 90.6
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.5e-102 375.6 208 88.9
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 4.3e-102 374.8 206 89.8
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 7.4e-102 374.0 206 90.3
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.3e-101 373.2 206 90.3
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 1.7e-101 372.9 208 89.9
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 2.8e-101 372.1 207 89.9
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.8e-101 372.1 208 90.4
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 3.7e-101 371.7 207 88.9
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.1e-100 370.2 206 88.3
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 89.4
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 89.4
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 2.4e-100 369.0 208 88.5
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 2.4e-100 369.0 209 88.5
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 2.4e-100 369.0 218 86.2
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 4.1e-100 368.2 206 89.3
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 5.3e-100 367.9 208 89.4
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 5.3e-100 367.9 208 89.4
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 6.9e-100 367.5 207 90.3
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 1.2e-99 366.7 208 88.9
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 1.2e-99 366.7 209 88.5
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.2e-99 366.7 208 88.9
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 88.0
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 88.9
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 88.9
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 2.6e-99 365.5 206 88.3
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 5.9e-99 364.4 206 88.8
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 5.9e-99 364.4 207 87.4
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 7.7e-99 364.0 207 87.9
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 7.7e-99 364.0 209 87.6
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 7.7e-99 364.0 209 87.6
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 87.0
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.0e-98 363.6 207 87.4
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.0e-98 363.6 205 88.8
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 88.5
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.3e-98 363.2 208 87.5
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 3.8e-98 361.7 203 89.2
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 5.0e-98 361.3 208 87.0
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 5.0e-98 361.3 205 88.3
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 1.1e-97 360.1 208 87.0
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 1.1e-97 360.1 208 89.4
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 1.9e-97 359.4 207 88.4
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 3.2e-97 358.6 208 85.6
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 1.4e-95 353.2 196 90.3
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 2.3e-95 352.4 208 83.7
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 8.8e-95 350.5 208 83.2
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 2.0e-94 349.4 208 85.6
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.3e-94 348.6 207 85.5
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.3e-94 348.6 207 85.5
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.3e-93 346.7 207 85.0
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 8.2e-93 344.0 208 84.1
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.2e-91 340.1 207 83.1
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 5.9e-91 337.8 208 84.6
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 5.0e-90 334.7 178 93.8
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 5.0e-90 334.7 179 93.3
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 1.1e-89 333.6 178 93.3
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.9e-89 332.8 206 84.5
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 8.0e-88 327.4 178 92.1
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 3.0e-87 325.5 177 89.8
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 3.0e-87 325.5 179 89.4
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 1.5e-86 323.2 208 76.4
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 4.4e-86 321.6 210 82.9
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 3.7e-85 318.5 190 85.3
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 5.9e-83 311.2 208 80.3
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 2.2e-77 292.7 205 75.1
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 1.4e-76 290.0 156 92.3
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 3.1e-76 288.9 207 74.4
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 5.3e-76 288.1 167 85.0
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 4.5e-75 285.0 156 91.0
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 4.8e-69 265.0 211 69.2
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 2.0e-67 259.6 203 61.6
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 2.3e-66 256.1 202 61.4
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 2.9e-66 255.8 196 61.2
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 5.0e-66 255.0 206 67.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 6.8e-63 244.6 197 60.9
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 1.3e-61 240.4 162 78.4
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 1.7e-58 229.9 205 53.2
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 2.9e-58 229.2 133 91.0
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.5e-57 226.9 120 92.5
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 4.9e-53 211.8 207 53.1
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 1.6e-51 206.8 148 73.0
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 1.6e-51 206.8 207 52.7
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 6.0e-51 204.9 151 72.8
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 2.1e-48 196.4 198 47.5
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 1.8e-47 193.4 209 55.0
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 5.2e-47 191.8 198 46.5
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 3.5e-43 179.1 231 44.6
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 3.9e-42 175.6 160 64.4
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 1.5e-38 163.7 98 81.6
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 3.4e-38 162.5 208 48.1
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 2.1e-32 143.3 206 46.1
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 3.1e-31 139.4 96 77.1
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.6e-30 136.3 74 91.9
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 3.4e-30 136.0 99 71.7
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 4.4e-30 135.6 187 38.5
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.2e-28 129.0 83 77.1
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 4.2e-28 129.0 92 72.8
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 5.1e-26 122.1 135 53.3
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 1.6e-24 117.1 60 88.3
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 5.3e-23 112.1 82 69.5
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 2.9e-21 106.3 73 76.7
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 1.1e-20 104.4 60 85.0
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 5.4e-12 75.5 61 60.7
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 1.3e-10 70.9 62 66.1
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 6.2e-08 62.0 39 69.2
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 4.0e-07 59.3 58 63.8
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 5.3e-07 58.9 38 68.4
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 3.4e-06 56.2 157 24.2


User provided reference genes

Program Settings