Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 4.4e-173 611.3 332 100.0
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.3e-144 515.4 334 83.5
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 7.9e-130 467.6 332 75.0
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 3.3e-128 462.2 333 73.9
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 5.6e-128 461.5 333 75.7
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 4.0e-126 455.3 333 74.2
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 6.0e-122 441.4 333 72.1
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 2.1e-119 433.0 328 69.5
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 4.8e-119 431.8 331 71.0
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.4e-118 429.5 331 69.8
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.5e-117 426.8 330 70.0
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 3.4e-117 425.6 332 66.9
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 8.4e-116 421.0 332 69.6
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 1.4e-115 420.2 333 66.4
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 1.2e-114 417.2 333 69.4
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.1e-114 416.4 333 66.7
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 2.3e-113 412.9 335 67.2
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 3.9e-113 412.1 333 64.6
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 1.1e-112 410.6 333 65.8
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.3e-111 407.1 333 65.2
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 1.3e-111 407.1 333 67.6
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 3.7e-111 405.6 332 62.3
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 1.4e-110 403.7 333 64.3
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 4.1e-110 402.1 333 66.7
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 5.3e-110 401.7 333 65.5
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 2.0e-109 399.8 333 66.1
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.5e-109 398.7 333 66.4
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.6e-109 397.9 333 66.1
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.0e-108 397.5 334 64.4
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 1.3e-108 397.1 334 65.6
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.8e-108 395.6 342 64.9
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 3.8e-108 395.6 333 64.9
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 1.4e-107 393.7 334 61.7
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 2.5e-107 392.9 327 65.4
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 4.2e-107 392.1 334 61.7
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.2e-106 390.6 334 61.7
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.6e-106 390.2 342 64.9
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 2.7e-106 389.4 335 63.9
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 3.6e-106 389.0 337 63.2
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 6.1e-106 388.3 333 63.4
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 3.0e-105 386.0 332 62.0
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 3.0e-105 386.0 334 62.3
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 6.7e-105 384.8 334 63.8
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 8.7e-105 384.4 334 63.5
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 2.5e-104 382.9 333 64.6
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.7e-103 380.2 332 61.1
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.3e-103 378.3 336 63.7
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 3.1e-102 375.9 248 77.4
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 1.2e-101 374.0 334 63.2
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 2.0e-101 373.2 339 60.8
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 3.4e-101 372.5 335 60.6
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 4.5e-101 372.1 280 69.3
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 4.5e-101 372.1 333 59.5
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.7e-100 370.2 332 59.3
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.7e-100 370.2 320 58.1
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 2.2e-100 369.8 320 58.4
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 1.4e-99 367.1 333 59.2
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 2.5e-99 366.3 251 74.5
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 2.5e-99 366.3 332 58.4
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 3.2e-99 365.9 320 58.4
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 5.5e-99 365.2 334 62.0
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 7.2e-99 364.8 386 53.6
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 9.4e-99 364.4 325 63.4
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 9.4e-99 364.4 277 69.0
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 2.7e-98 362.8 333 61.9
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 2.7e-98 362.8 335 60.0
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 7.9e-98 361.3 320 58.1
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 2.3e-97 359.8 285 66.0
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.3e-97 359.8 339 57.8
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 3.9e-97 359.0 372 57.3
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 6.7e-97 358.2 337 58.5
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 2.6e-96 356.3 340 59.4
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 5.7e-96 355.1 332 60.8
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 1.8e-94 350.1 330 57.9
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 3.1e-94 349.4 337 59.1
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 4.1e-94 349.0 338 59.2
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 9.1e-94 347.8 339 58.1
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 1.5e-93 347.1 337 60.8
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 2.0e-93 346.7 337 59.3
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.6e-93 346.3 337 58.8
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 7.7e-93 344.7 332 59.6
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 2.2e-92 343.2 334 57.5
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 8.5e-92 341.3 333 58.3
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 4.2e-91 339.0 343 57.4
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 8.0e-90 334.7 362 55.0
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 2.6e-88 329.7 350 55.7
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 1.3e-87 327.4 341 53.1
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.3e-87 327.4 307 57.0
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 1.3e-87 327.4 336 55.7
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 2.8e-87 326.2 321 54.5
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 4.1e-86 322.4 336 55.1
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.6e-85 320.5 333 54.4
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 3.5e-85 319.3 337 51.9
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.0e-84 317.8 344 51.7
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 1.7e-84 317.0 334 54.8
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 1.7e-84 317.0 332 54.8
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 4.2e-83 312.4 339 52.2
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 4.2e-83 312.4 337 55.8
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 4.2e-83 312.4 337 55.8
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 4.2e-83 312.4 337 55.8
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 7.2e-83 311.6 335 55.8
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 7.2e-83 311.6 332 51.2
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 2.7e-82 309.7 273 58.6
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 4.7e-82 308.9 340 50.9
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 5.2e-81 305.4 377 51.7
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 5.2e-81 305.4 333 54.7
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 5.2e-81 305.4 339 54.0
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 8.8e-81 304.7 333 54.7
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.2e-80 304.3 340 50.3
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 2.0e-80 303.5 335 55.2
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 2.6e-80 303.1 328 51.2
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.6e-80 303.1 340 50.0
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 9.7e-80 301.2 328 52.1
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 3.7e-79 299.3 333 52.9
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 4.8e-79 298.9 330 53.9
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 6.3e-79 298.5 336 53.3
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 4.1e-78 295.8 330 51.5
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 1.2e-77 294.3 328 54.0
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 1.6e-77 293.9 340 52.1
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 2.0e-77 293.5 337 52.2
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 2.0e-77 293.5 337 52.2
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 2.2e-76 290.0 333 52.6
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 2.2e-76 290.0 335 52.2
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.9e-75 287.0 318 55.0
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 1.2e-74 284.3 216 72.7
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 4.7e-74 282.3 219 68.9
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 6.1e-74 282.0 340 53.2
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 3.4e-72 276.2 235 64.7
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 3.4e-72 276.2 244 59.4
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 4.4e-72 275.8 340 52.4
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 9.8e-72 274.6 340 52.4
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.8e-70 270.4 333 51.4
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 7.0e-70 268.5 369 49.1
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 9.1e-70 268.1 329 50.5
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.3e-68 264.2 278 55.0
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 4.5e-61 239.2 297 50.5
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 5.0e-60 235.7 327 48.3
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 1.1e-59 234.6 297 51.5
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 4.0e-57 226.1 257 53.3
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 8.9e-57 224.9 203 63.5
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.5e-56 221.9 203 63.1
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.8e-56 221.5 203 62.1
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.7e-55 219.5 147 78.9
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 5.4e-54 215.7 327 45.3
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 5.0e-52 209.1 163 69.3
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.8e-50 203.4 172 64.5
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.2e-49 199.1 174 62.1
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 5.2e-49 199.1 324 42.3
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 5.8e-48 195.7 335 39.1
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 6.4e-47 192.2 158 62.0
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 2.1e-45 187.2 163 59.5
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 1.9e-43 180.6 325 39.1
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.9e-43 180.6 333 39.0
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.2e-39 167.2 148 57.4
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.7e-36 157.5 128 64.1
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 1.2e-34 151.4 209 46.9
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.4e-33 147.1 134 58.2
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 6.8e-33 145.6 202 49.5
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.2e-32 144.8 138 54.3
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 2.9e-31 140.2 136 53.7
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 8.4e-23 112.1 122 49.2
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 5.4e-22 109.4 218 35.8
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 1.3e-20 104.8 98 57.1
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 1.6e-18 97.8 105 49.5
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 6.2e-18 95.9 307 32.2
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.4e-14 84.7 142 37.3
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 2.3e-12 77.4 91 49.5
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 8.7e-12 75.5 64 64.1
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 2.8e-10 70.5 59 55.9


User provided reference genes

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