Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 1.1e-161 573.2 286 100.0
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 1.2e-121 440.3 281 78.3
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 2.2e-120 436.0 286 75.5
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 1.3e-112 410.2 288 71.5
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 1.3e-112 410.2 274 78.1
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 2.2e-112 409.5 289 72.3
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 1.1e-111 407.1 270 76.3
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 1.4e-111 406.8 289 72.7
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 2.4e-111 406.0 272 73.5
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 9.2e-111 404.1 290 71.4
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 9.2e-111 404.1 290 71.0
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 4.6e-110 401.7 276 72.8
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 4.6e-110 401.7 275 73.1
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 6.0e-110 401.4 287 70.0
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 1.0e-109 400.6 281 72.2
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 1.7e-109 399.8 275 74.2
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 1.7e-109 399.8 289 68.9
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 1.5e-108 396.7 289 66.8
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 3.3e-108 395.6 267 73.8
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 3.3e-108 395.6 276 71.7
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 9.5e-108 394.0 273 70.7
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 1.2e-107 393.7 282 69.5
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 1.1e-106 390.6 287 67.6
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 1.4e-106 390.2 275 71.3
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 3.1e-106 389.0 288 67.0
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 1.5e-105 386.7 305 65.6
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 5.8e-105 384.8 274 70.4
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 7.5e-105 384.4 280 68.2
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 3.7e-104 382.1 272 72.1
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 8.3e-104 380.9 272 69.1
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 8.3e-104 380.9 272 69.1
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 5.4e-103 378.3 286 67.5
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 7.1e-103 377.9 292 67.8
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 1.2e-102 377.1 277 69.7
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 2.1e-102 376.3 272 67.6
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 6.0e-102 374.8 272 68.8
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 7.8e-102 374.4 279 69.2
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 1.3e-101 373.6 273 68.9
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 1.7e-101 373.2 272 68.8
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 1.1e-100 370.5 293 62.1
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 1.5e-100 370.2 272 67.6
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 1.9e-100 369.8 281 65.1
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 1.9e-100 369.8 273 68.5
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 2.5e-100 369.4 235 77.9
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 2.5e-100 369.4 274 67.9
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 3.3e-100 369.0 277 67.9
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 1.6e-99 366.7 286 67.1
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 1.1e-98 364.0 278 63.3
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 3.1e-98 362.5 276 63.0
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 3.1e-98 362.5 262 67.9
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 2.6e-97 359.4 293 66.2
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 2.6e-97 359.4 268 66.8
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 2.2e-96 356.3 338 56.5
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 3.7e-96 355.5 279 62.7
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 4.9e-96 355.1 277 65.3
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 6.4e-96 354.8 268 66.4
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 1.1e-95 354.0 277 64.3
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 1.1e-95 354.0 267 66.7
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 1.4e-95 353.6 277 62.1
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 1.9e-95 353.2 267 64.8
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 4.1e-95 352.1 280 63.6
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 7.1e-95 351.3 266 64.7
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 2.7e-94 349.4 286 61.2
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 2.7e-94 349.4 286 60.8
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 4.6e-94 348.6 286 60.5
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 7.8e-94 347.8 267 65.5
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 1.3e-93 347.1 279 62.4
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 1.3e-93 347.1 279 62.4
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 1.7e-93 346.7 294 59.9
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 3.0e-93 345.9 286 60.1
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 5.1e-93 345.1 291 63.9
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 6.6e-93 344.7 240 69.6
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 8.6e-93 344.4 323 56.3
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 1.1e-92 344.0 323 56.0
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 1.2e-89 334.0 285 61.8
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 5.8e-89 331.6 210 76.2
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 6.4e-88 328.2 235 71.1
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 2.7e-86 322.8 279 58.1
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 7.8e-86 321.2 284 60.9
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 2.1e-83 313.2 209 71.8
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 2.1e-83 313.2 286 58.4
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 3.6e-83 312.4 209 69.9
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 1.4e-82 310.5 251 63.3
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 1.8e-82 310.1 230 64.8
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 1.6e-78 297.0 211 69.2
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 4.6e-78 295.4 264 56.8
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 3.9e-77 292.4 197 70.6
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 9.0e-74 281.2 235 59.6
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 2.6e-73 279.6 192 69.3
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 6.0e-70 268.5 225 59.1
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 4.0e-66 255.8 223 62.3
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 6.9e-66 255.0 183 69.4
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 8.4e-64 248.1 194 64.4
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 4.3e-60 235.7 173 69.9
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 5.7e-60 235.3 209 59.8
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 6.1e-54 215.3 167 65.3
Nitab4.5_0001642g0020 Nicotiana tabacum HOM05D006519 ORTHO05D008306 3.0e-53 213.0 133 75.9
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 3.3e-52 209.5 166 66.9
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 5.3e-50 202.2 165 64.2
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 3.2e-47 193.0 208 52.9
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 4.6e-46 189.1 182 56.0
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 5.1e-45 185.7 237 46.4
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 3.3e-44 183.0 305 38.7
Actinidia19081 Actinidia chinensis HOM05D006519 ORTHO05D008306 2.9e-40 169.9 143 62.2
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 3.9e-37 159.5 100 77.0
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 2.6e-36 156.8 102 70.6
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 8.2e-35 151.8 125 59.2
Nitab4.5_0001642g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 1.4e-34 151.0 130 63.1
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 2.7e-30 136.7 100 66.0
CDE06G0478 Ceratophyllum demersum HOM05D006519 ORTHO05D008306 6.1e-30 135.6 83 78.3
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 3.0e-29 133.3 122 54.9
Os06g0239000 Oryza sativa ssp. japonica HOM05D006519 ORTHO05D008306 7.5e-28 128.6 100 65.0
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 4.8e-27 125.9 98 63.3
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 1.1e-26 124.8 97 58.8
Dinv20697 Davidia involucrata HOM05D006519 ORTHO05D008306 9.1e-26 121.7 121 57.9
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 2.7e-22 110.2 102 54.9
PRCOL_00000545 Prasinoderma coloniale HOM05D006519 ORTHO05D008306 2.0e-20 104.0 233 32.2
BcaC05g25762 Brassica carinata HOM05D006519 ORTHO05D008306 5.4e-18 95.9 79 62.0
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 4.5e-17 92.8 84 56.0
arahy.Tifrunner.gnm1.ann1.RNN7F2 Arachis hypogaea HOM05D006519 ORTHO05D008306 1.6e-14 84.3 83 53.0
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 3.6e-14 83.2 68 58.8
SEGI_16810 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 4.7e-14 82.8 50 76.0
arahy.Tifrunner.gnm1.ann1.PY279F Arachis hypogaea HOM05D006519 ORTHO05D008306 2.0e-12 77.4 65 61.5
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-12 77.4 96 47.9
Potri.015G071001 Populus trichocarpa HOM05D006519 ORTHO05D008306 4.9e-11 72.8 54 64.8


User provided reference genes

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