Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 3.8e-282 974.2 487 100.0
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 4.9e-173 611.7 462 68.0
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 4.2e-172 608.6 460 67.6
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 5.5e-172 608.2 460 67.4
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 6.0e-171 604.7 459 66.9
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 3.1e-167 592.4 460 66.7
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 5.3e-167 591.7 458 65.5
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 9.3e-164 580.9 460 64.8
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 1.9e-161 573.2 460 65.4
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 1.9e-161 573.2 460 63.7
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 7.4e-161 571.2 463 63.5
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 1.1e-159 567.4 461 63.1
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 3.1e-159 565.8 457 64.3
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 1.2e-158 563.9 460 62.4
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 2.0e-158 563.1 465 63.2
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 3.2e-156 555.8 460 62.0
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 1.4e-154 550.4 457 62.1
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 6.7e-154 548.1 460 62.0
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 1.5e-153 547.0 460 62.2
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 4.5e-150 535.4 464 59.9
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.2e-149 533.1 464 59.5
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.2e-149 533.1 461 59.9
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 3.8e-149 532.3 444 60.8
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 2.5e-148 529.6 462 60.4
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 3.2e-148 529.3 461 60.3
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 5.5e-148 528.5 437 61.3
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 6.1e-147 525.0 493 59.0
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 7.9e-147 524.6 457 60.2
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 2.3e-146 523.1 391 66.2
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 5.2e-146 521.9 423 63.8
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 4.4e-145 518.8 487 57.1
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 1.3e-144 517.3 457 58.2
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 1.2e-142 510.8 460 55.4
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 5.9e-142 508.4 462 58.0
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 3.8e-141 505.8 465 57.2
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 5.0e-141 505.4 465 57.2
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 8.5e-141 504.6 489 55.0
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 1.9e-140 503.4 459 58.0
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 7.2e-140 501.5 460 55.2
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 4.7e-139 498.8 460 54.8
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 8.8e-138 494.6 460 54.3
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 2.0e-137 493.4 468 55.8
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 9.7e-137 491.1 466 56.0
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 1.7e-136 490.3 461 55.1
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 2.8e-136 489.6 462 54.1
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 1.1e-135 487.6 467 55.5
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 9.1e-135 484.6 462 54.1
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 9.1e-135 484.6 462 54.1
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 1.6e-134 483.8 462 53.9
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 5.9e-134 481.9 457 55.4
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 1.7e-133 480.3 462 54.1
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 3.8e-133 479.2 462 54.1
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 5.0e-133 478.8 452 55.1
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 5.0e-133 478.8 461 54.9
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 8.5e-133 478.0 461 53.1
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 8.5e-133 478.0 475 55.4
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 6.1e-131 471.9 462 54.8
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 6.8e-130 468.4 461 54.7
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 1.1e-127 461.1 398 59.0
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 4.1e-127 459.1 471 53.1
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 1.6e-126 457.2 469 54.4
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 5.9e-126 455.3 456 54.4
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 5.9e-126 455.3 465 53.8
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 1.5e-124 450.7 389 59.4
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 1.2e-123 447.6 463 51.2
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 1.0e-122 444.5 399 56.1
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 9.8e-121 438.0 399 55.9
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 1.7e-120 437.2 471 50.3
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 8.3e-120 434.9 477 48.8
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 9.2e-119 431.4 462 50.0
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 1.2e-118 431.0 427 54.8
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 3.5e-118 429.5 469 51.8
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 5.0e-117 425.6 430 54.2
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 1.2e-115 421.0 462 50.6
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 3.6e-115 419.5 461 50.1
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 3.4e-113 412.9 465 49.9
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 5.6e-108 395.6 331 62.5
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 2.8e-107 393.3 521 44.7
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 2.9e-104 383.3 500 44.8
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 6.0e-102 375.6 402 52.5
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 5.0e-101 372.5 463 46.2
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 1.4e-98 364.4 396 48.7
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 2.5e-92 343.6 364 50.0
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 4.0e-90 336.3 470 42.1
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 4.0e-90 336.3 411 45.0
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 4.1e-87 326.2 486 42.8
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 6.0e-86 322.4 263 64.3
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 1.6e-83 314.3 602 36.9
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 4.6e-78 296.2 469 38.6
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 4.6e-78 296.2 328 49.1
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 4.6e-78 296.2 328 49.1
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 9.0e-74 282.0 263 57.8
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 1.9e-68 264.2 260 55.0
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 2.1e-62 244.2 465 33.8
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 5.1e-53 213.0 258 45.3
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 6.5e-48 196.1 197 52.8
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 6.5e-48 196.1 179 56.4
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 1.8e-42 177.9 177 53.1
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 5.0e-40 169.9 191 48.2
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 6.5e-40 169.5 240 41.7
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 2.8e-35 154.1 198 46.5
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 2.9e-32 144.1 225 33.8
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 2.1e-30 137.9 460 28.9
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 2.2e-27 127.9 242 36.0
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.4e-26 125.2 116 50.0
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 5.3e-26 123.2 114 49.1
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 3.5e-25 120.6 114 50.0
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 2.2e-19 101.3 155 42.6
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 7.2e-15 86.3 84 50.0
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 3.0e-13 80.9 95 44.2


User provided reference genes

Program Settings