Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 7.3e-267 923.3 462 100.0
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 2.9e-215 751.9 508 74.2
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 3.9e-204 714.9 509 70.3
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 3.1e-201 705.3 511 69.9
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 5.3e-201 704.5 508 70.7
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 5.3e-201 704.5 510 71.6
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 4.5e-200 701.4 504 70.4
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 3.8e-199 698.4 508 71.1
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 9.4e-198 693.7 478 74.1
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 1.2e-197 693.3 507 69.0
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 1.6e-197 693.0 507 68.8
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.8e-196 689.5 511 67.5
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 2.3e-196 689.1 511 67.3
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 3.0e-196 688.7 508 68.1
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 5.1e-196 688.0 507 68.4
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 2.6e-195 685.6 505 68.3
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 3.3e-195 685.3 511 67.3
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 5.7e-195 684.5 485 69.9
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 7.4e-195 684.1 508 68.3
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 2.2e-194 682.6 513 68.0
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 2.8e-194 682.2 507 67.9
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 3.1e-193 678.7 508 67.3
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 4.1e-193 678.3 531 65.9
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 2.0e-192 676.0 507 66.9
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 3.5e-192 675.2 507 67.3
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 3.5e-192 675.2 481 70.5
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 2.2e-191 672.5 489 69.1
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 2.9e-191 672.2 504 67.3
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 2.9e-191 672.2 476 71.8
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 8.5e-191 670.6 509 67.0
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 1.9e-190 669.5 507 67.3
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 3.2e-190 668.7 485 68.7
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 4.2e-190 668.3 505 66.5
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 1.2e-189 666.8 509 67.2
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 2.1e-189 666.0 509 66.6
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 1.0e-188 663.7 486 68.1
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 2.3e-188 662.5 487 68.6
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 4.8e-186 654.8 507 65.3
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 8.2e-186 654.1 504 65.5
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 1.1e-185 653.7 489 66.5
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 4.1e-185 651.7 466 69.7
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 5.3e-185 651.4 434 75.3
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 5.3e-185 651.4 489 66.3
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 5.3e-185 651.4 477 69.2
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 3.5e-184 648.7 489 66.3
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 3.5e-184 648.7 490 66.7
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 4.5e-184 648.3 507 64.1
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 2.9e-183 645.6 489 66.1
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 5.0e-183 644.8 507 64.7
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 6.5e-183 644.4 507 63.7
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 7.2e-182 641.0 511 64.0
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 2.1e-181 639.4 509 64.2
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 6.1e-181 637.9 507 62.9
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 1.4e-180 636.7 506 64.2
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 2.3e-180 636.0 440 72.0
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 3.0e-180 635.6 503 63.6
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 3.0e-180 635.6 490 65.3
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 5.2e-180 634.8 508 63.2
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 1.2e-179 633.6 508 63.8
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 1.5e-179 633.3 487 64.9
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 2.0e-179 632.9 505 62.8
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 2.0e-179 632.9 509 62.9
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 2.0e-179 632.9 482 66.2
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 2.2e-178 629.4 508 63.0
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 6.3e-178 627.9 507 62.3
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 7.0e-177 624.4 508 63.8
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 2.7e-176 622.5 481 64.4
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 2.7e-176 622.5 508 62.8
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 3.5e-176 622.1 508 62.6
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 5.9e-176 621.3 508 61.2
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 5.9e-176 621.3 483 64.6
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.3e-175 620.2 481 64.7
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 2.2e-175 619.4 486 64.2
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 3.8e-175 618.6 477 64.2
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 3.8e-175 618.6 481 64.7
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 3.8e-175 618.6 507 60.9
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 5.0e-175 618.2 499 62.1
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 5.0e-175 618.2 499 62.3
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.5e-174 616.7 508 63.0
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 2.5e-174 615.9 502 64.3
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 7.2e-174 614.4 485 63.3
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 6.1e-173 611.3 481 63.0
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 8.0e-173 610.9 469 64.2
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 2.3e-172 609.4 440 68.2
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 5.2e-172 608.2 490 63.5
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 2.6e-171 605.9 501 61.3
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 2.6e-171 605.9 501 61.3
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 2.6e-171 605.9 501 61.3
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 7.5e-171 604.4 510 59.6
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.6e-168 596.7 440 67.5
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 2.7e-168 595.9 478 62.6
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 1.3e-167 593.6 466 64.6
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 2.3e-167 592.8 440 67.5
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 2.1e-165 586.3 462 64.5
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 3.7e-162 575.5 480 62.7
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 3.7e-162 575.5 488 58.4
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.1e-161 573.9 483 61.1
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 3.2e-161 572.4 467 60.2
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 4.1e-161 572.0 474 63.3
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 3.5e-160 568.9 444 65.1
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 7.8e-160 567.8 501 57.3
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.3e-159 567.0 331 84.9
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 3.9e-159 565.5 479 60.1
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 4.3e-158 562.0 485 58.4
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.3e-154 550.4 409 68.0
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 1.4e-153 547.0 460 61.7
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 5.0e-151 538.5 453 61.1
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 8.6e-151 537.7 418 65.6
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.2e-149 533.9 333 77.5
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 6.4e-146 521.5 468 57.3
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.1e-145 520.8 468 56.4
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 3.2e-145 519.2 320 79.4
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 6.6e-143 511.5 333 74.2
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 9.2e-137 491.1 444 58.1
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 2.1e-133 479.9 326 70.2
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 9.9e-131 471.1 474 49.6
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 7.8e-128 461.5 446 54.7
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.3e-127 460.7 294 75.5
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 2.3e-127 459.9 294 75.9
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 9.6e-126 454.5 490 49.0
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 8.7e-119 431.4 463 48.2
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 1.8e-111 407.1 494 44.5
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 4.1e-100 369.4 440 47.5
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 2.5e-94 350.1 289 62.3
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 1.2e-91 341.3 347 51.6
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 2.8e-77 293.5 541 37.0
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 2.6e-75 287.0 606 32.5
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 2.7e-72 276.9 250 57.6
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 2.0e-62 244.2 469 36.5
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 1.4e-60 238.0 455 34.7
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 2.0e-51 207.6 202 54.5
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 1.6e-43 181.4 309 38.8
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 7.8e-43 179.1 108 85.2
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 5.0e-42 176.4 237 46.8
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 7.3e-41 172.6 155 60.0
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 1.2e-32 145.2 99 72.7
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 1.4e-31 141.7 119 57.1
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 2.0e-30 137.9 87 72.4
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 2.7e-27 127.5 183 43.7
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 3.5e-27 127.1 128 53.9
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 1.7e-26 124.8 83 71.1
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 5.8e-22 109.8 68 73.5
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 1.7e-21 108.2 68 82.4
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 2.4e-07 61.2 38 76.3


User provided reference genes

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