Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1107 Trochodendron aralioides HOM05D003772 ORTHO05D004509 3.5e-51 204.9 124 100.0
Dinv38528 Davidia involucrata HOM05D008378 ORTHO05D010346 2.2e-16 89.4 111 53.2
MBI06_g33538_MAGBIO Magnolia biondii HOM05D003772 ORTHO05D004509 7.0e-15 84.3 132 44.7
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 5.9e-14 81.3 90 52.2
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 2.2e-13 79.3 90 50.0
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 6.5e-13 77.8 91 50.5
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 6.5e-13 77.8 91 52.7
Haze_07583 Corylus avellana HOM05D008378 ORTHO05D010346 8.5e-13 77.4 123 47.2
TWI14G0631 Tripterygium wilfordii HOM05D008378 ORTHO05D010346 1.1e-12 77.0 125 44.0
QL10p006910 Quercus lobata HOM05D008378 ORTHO05D010346 3.2e-12 75.5 112 48.2
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 4.2e-12 75.1 140 37.9
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 4.2e-12 75.1 91 48.4
Hma1.2p1_0002F.1_g001920 Hydrangea macrophylla HOM05D003772 ORTHO05D004509 5.5e-12 74.7 91 48.4
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 7.2e-12 74.3 91 49.5
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 9.4e-12 73.9 91 48.4
CiPaw.11G020600 Carya illinoinensis HOM05D008378 ORTHO05D010346 9.4e-12 73.9 129 42.6
Nn1g06533 Nelumbo nucifera HOM05D003772 ORTHO05D004509 9.4e-12 73.9 91 48.4
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 9.4e-12 73.9 91 47.3
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 1.2e-11 73.6 91 49.5
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 1.2e-11 73.6 91 47.3
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 1.6e-11 73.2 91 48.4
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.6e-11 73.2 91 48.4
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 1.6e-11 73.2 91 48.4
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 1.6e-11 73.2 91 47.3
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 2.1e-11 72.8 91 45.1
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 2.1e-11 72.8 140 37.1
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 2.1e-11 72.8 91 48.4
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 2.7e-11 72.4 91 47.3
Cfa019213 Carpinus fangiana HOM05D008378 ORTHO05D010346 6.1e-11 71.2 114 47.4
Dinv16953 Davidia involucrata HOM05D008378 ORTHO05D010346 6.1e-11 71.2 108 47.2
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 6.1e-11 71.2 91 48.4
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 8.0e-11 70.9 137 37.2
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 8.0e-11 70.9 140 39.3
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 1.0e-10 70.5 147 36.1
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 1.0e-10 70.5 110 43.6
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 1.4e-10 70.1 91 47.3
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 1.4e-10 70.1 91 47.3
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 1.4e-10 70.1 91 47.3
Lj8P111T15 Lonicera japonica HOM05D003772 ORTHO05D004509 1.4e-10 70.1 91 45.1
Ciclev10016940m.g Citrus clementina HOM05D003772 ORTHO05D004509 1.8e-10 69.7 91 48.4
CsaV3_1G001040 Cucumis sativus L. HOM05D000048 ORTHO05D010346 1.8e-10 69.7 118 42.4
HanXRQChr02g0035801 Helianthus annuus HOM05D008378 ORTHO05D010346 1.8e-10 69.7 83 53.0
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 1.8e-10 69.7 91 46.2
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 1.8e-10 69.7 90 45.6
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 1.8e-10 69.7 91 48.4
Hma1.2p1_0046F.1_g027100 Hydrangea macrophylla HOM05D003772 ORTHO05D010346 2.3e-10 69.3 112 44.6
ECA247G3718 Erigeron canadensis HOM05D000048 ORTHO05D000207 3.0e-10 68.9 97 46.4
Lalb_Chr19g0135261 Lupinus albus HOM05D003772 ORTHO05D004509 3.0e-10 68.9 91 46.2
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 3.0e-10 68.9 91 45.1
QL08p038995 Quercus lobata HOM05D003772 ORTHO05D004509 3.0e-10 68.9 91 45.1
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 4.0e-10 68.6 91 44.0
ClCG06G017410 Citrullus lanatus HOM05D008378 ORTHO05D010346 4.0e-10 68.6 115 43.5
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 4.0e-10 68.6 91 46.2
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 4.0e-10 68.6 91 47.3
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 4.0e-10 68.6 91 46.2
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 5.2e-10 68.2 90 44.4
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 5.2e-10 68.2 90 44.4
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 6.8e-10 67.8 91 42.9
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 6.8e-10 67.8 91 46.2
SalBow6G1615 Salvia bowleyana HOM05D008378 ORTHO05D010346 6.8e-10 67.8 112 46.4
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 8.8e-10 67.4 90 46.7
Prupe.3G132300 Prunus persica HOM05D003772 ORTHO05D004509 8.8e-10 67.4 91 46.2
vmacro19302 Vaccinium macrocarpon HOM05D008378 ORTHO05D010346 8.8e-10 67.4 125 44.0
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 8.8e-10 67.4 91 46.2
Gorai.002G018300 Gossypium raimondii HOM05D003772 ORTHO05D004509 1.2e-09 67.0 90 46.7
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 1.2e-09 67.0 91 45.1
RcHm_v2.0_Chr2g0126711 Rosa chinensis HOM05D003772 ORTHO05D004509 1.2e-09 67.0 91 47.3
SalBow5G0298 Salvia bowleyana HOM05D008378 ORTHO05D010346 1.2e-09 67.0 109 42.2
SalBow5G3471 Salvia bowleyana HOM05D008378 ORTHO05D010346 1.2e-09 67.0 109 42.2
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 1.5e-09 66.6 91 45.1
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 1.5e-09 66.6 91 45.1
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 1.5e-09 66.6 91 45.1
PSO541G0621 Papaver somniferum HOM05D003772 ORTHO05D004509 1.5e-09 66.6 122 39.3
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 1.5e-09 66.6 137 38.0
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 1.5e-09 66.6 122 34.4
TPR.G28019 Trifolium pratense HOM05D003772 ORTHO05D004509 1.5e-09 66.6 91 44.0
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 2.0e-09 66.2 91 44.0
MSTRG.23165 Avicennia marina HOM05D008378 ORTHO05D010346 2.0e-09 66.2 116 44.8
PGR083G1326 Punica granatum HOM05D008378 ORTHO05D010346 2.0e-09 66.2 120 38.3
DCAR_021586 Daucus carota HOM05D003772 ORTHO05D004509 2.6e-09 65.9 85 47.1
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 2.6e-09 65.9 91 42.9
Glyma.06G292300 Glycine max HOM05D003772 ORTHO05D004509 2.6e-09 65.9 91 44.0
Manes.06G110000 Manihot esculenta HOM05D008378 ORTHO05D010346 2.6e-09 65.9 95 42.1
Manes.13G145815 Manihot esculenta HOM05D003772 ORTHO05D004509 2.6e-09 65.9 91 45.1
Manes.13G146061 Manihot esculenta HOM05D003772 ORTHO05D004509 2.6e-09 65.9 91 45.1
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 2.6e-09 65.9 91 45.1
CSS0030564 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 3.4e-09 65.5 90 44.4
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 3.4e-09 65.5 88 44.3
Glyma.12G113500 Glycine max HOM05D003772 ORTHO05D004509 3.4e-09 65.5 91 44.0
MD17G1239700 Malus domestica HOM05D003772 ORTHO05D004509 3.4e-09 65.5 91 44.0
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 4.4e-09 65.1 88 45.5
Rhsim08G0177400 Rhododendron simsii HOM05D008378 ORTHO05D010346 4.4e-09 65.1 119 45.4
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 4.4e-09 65.1 133 33.1
TWI23G0933 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 4.4e-09 65.1 91 47.3
Zm00001eb163400 Zea mays HOM05D003772 ORTHO05D004509 4.4e-09 65.1 91 49.5
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 5.7e-09 64.7 88 44.3
Manes.13G145811 Manihot esculenta HOM05D003772 ORTHO05D004509 5.7e-09 64.7 91 44.0
TWI14G0986 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 5.7e-09 64.7 91 45.1
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 7.5e-09 64.3 143 33.6
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 7.5e-09 64.3 143 33.6
Lsat_1_v5_gn_1_27801 Lactuca sativa HOM05D000048 ORTHO05D000207 7.5e-09 64.3 120 37.5
Lsat_1_v5_gn_4_66640 Lactuca sativa HOM05D003772 ORTHO05D004509 7.5e-09 64.3 91 42.9
Aqoxy5G03757 Aquilegia oxysepala HOM05D008378 ORTHO05D010346 9.8e-09 63.9 120 38.3
AUR62028720 Chenopodium quinoa HOM05D008378 ORTHO05D010346 9.8e-09 63.9 113 43.4
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 9.8e-09 63.9 139 33.1
Eucgr.A01826 Eucalyptus grandis HOM05D003772 ORTHO05D004509 1.3e-08 63.5 127 39.4
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 1.3e-08 63.5 97 45.4
Sed0018072 Sechium edule HOM05D003772 ORTHO05D004509 1.3e-08 63.5 91 41.8
MELO3C029768.2 Cucumis melo HOM05D008378 ORTHO05D010346 1.7e-08 63.2 123 43.1
Migut.D01994 Erythranthe guttata HOM05D008378 ORTHO05D010346 1.7e-08 63.2 61 62.3
ClCG00G003560 Citrullus lanatus HOM05D003772 ORTHO05D004509 2.2e-08 62.8 141 34.8
ClCG07G002860 Citrullus lanatus HOM05D003772 ORTHO05D004509 2.2e-08 62.8 141 34.8
MELO3C018731.2 Cucumis melo HOM05D003772 ORTHO05D004509 2.2e-08 62.8 91 44.0
CsaV3_7G004480 Cucumis sativus L. HOM05D003772 ORTHO05D004509 2.8e-08 62.4 91 42.9
DCAR_021247 Daucus carota HOM05D003772 ORTHO05D004509 2.8e-08 62.4 91 41.8
HanXRQChr05g0130551 Helianthus annuus HOM05D003772 ORTHO05D004509 2.8e-08 62.4 91 41.8
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 2.8e-08 62.4 143 32.9
VMungo1080G0856 Vigna mungo HOM05D003772 ORTHO05D004509 2.8e-08 62.4 89 41.6
Oeu007126.1 Olea europaea HOM05D003772 ORTHO05D004509 4.9e-08 61.6 137 35.0
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 4.9e-08 61.6 137 34.3
Sabra15G0107100 Salix brachista HOM05D002488 ORTHO05D002613 4.9e-08 61.6 87 42.5
THA.LOC104809774 Tarenaya hassleriana HOM05D008378 ORTHO05D010346 4.9e-08 61.6 62 56.5
EL10Ac5g10649 Beta vulgaris HOM05D008378 ORTHO05D010346 6.3e-08 61.2 115 40.0
EL10Ac9g20774 Beta vulgaris HOM05D003772 ORTHO05D004509 6.3e-08 61.2 92 41.3
AUR62008138 Chenopodium quinoa HOM05D008378 ORTHO05D010346 6.3e-08 61.2 83 48.2
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 6.3e-08 61.2 91 42.9
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 8.3e-08 60.8 85 43.5
Glyma.13G296500 Glycine max HOM05D003772 ORTHO05D004509 1.4e-07 60.1 91 41.8
Sp7g26290 Schrenkiella parvula HOM05D003772 ORTHO05D004509 1.4e-07 60.1 132 33.3
Sed0014985 Sechium edule HOM05D008378 ORTHO05D010346 1.4e-07 60.1 111 43.2
SGA_v2.0_scaffold322G48628 Striga asiatica HOM05D003772 ORTHO05D004509 1.4e-07 60.1 139 32.4
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.8e-07 59.7 88 42.0
HanXRQChr05g0154181 Helianthus annuus HOM05D008378 ORTHO05D010346 1.8e-07 59.7 125 42.4
SHI10396 Sapria himalayana HOM05D003772 ORTHO05D004509 2.4e-07 59.3 92 40.2
unitig_62.g23166 Utricularia gibba HOM05D003772 ORTHO05D004509 2.4e-07 59.3 138 34.8
BcaC09g50489 Brassica carinata HOM05D003772 ORTHO05D004509 3.1e-07 58.9 132 34.8
C01p24810 Brassica napus HOM05D003772 ORTHO05D004509 3.1e-07 58.9 132 34.8
Lsat_1_v5_gn_5_14380 Lactuca sativa HOM05D003772 ORTHO05D004509 3.1e-07 58.9 102 41.2
PSO754G0065 Papaver somniferum HOM05D008378 ORTHO05D010346 3.1e-07 58.9 83 49.4
THA.LOC104801171 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 3.1e-07 58.9 90 44.4
THA.LOC104804060 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 3.1e-07 58.9 133 33.8
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 4.1e-07 58.5 88 40.9
CARHR236040 Cardamine hirsuta HOM05D003772 ORTHO05D004509 4.1e-07 58.5 86 37.2
Prupe.8G004000 Prunus persica HOM05D008378 ORTHO05D010346 4.1e-07 58.5 123 35.0
Sabra13G0108200 Salix brachista HOM05D003772 ORTHO05D004509 4.1e-07 58.5 91 41.8
ATR0824G095 Amborella trichopoda HOM05D003772 ORTHO05D004509 5.4e-07 58.2 90 44.4
A08p20120 Brassica napus HOM05D003772 ORTHO05D004509 5.4e-07 58.2 86 39.5
BraA08t33971Z Brassica rapa HOM05D003772 ORTHO05D004509 5.4e-07 58.2 86 39.5
Potri.015G083900 Populus trichocarpa HOM05D008378 ORTHO05D010346 5.4e-07 58.2 87 41.4
Rhsim13G0122200 Rhododendron simsii HOM05D003772 ORTHO05D004509 5.4e-07 58.2 91 39.6
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 5.4e-07 58.2 90 42.2
BcaNung01575 Brassica carinata HOM05D003772 ORTHO05D004509 7.0e-07 57.8 132 34.1
A01p19750 Brassica napus HOM05D003772 ORTHO05D004509 7.0e-07 57.8 132 34.1
BraA01t01906Z Brassica rapa HOM05D003772 ORTHO05D004509 7.0e-07 57.8 132 34.1
Aa31LG5G2950 Aethionema arabicum HOM05D003772 ORTHO05D004509 9.2e-07 57.4 140 34.3
Thhalv10026455m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 9.2e-07 57.4 132 34.1
RcHm_v2.0_Chr6g0249651 Rosa chinensis HOM05D008378 ORTHO05D010346 9.2e-07 57.4 83 44.6
Ah.11g049030 Amaranthus hybridus HOM05D003772 ORTHO05D004509 1.2e-06 57.0 112 35.7
AT4G03600 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 1.2e-06 57.0 90 42.2
Carub.0007s1242 Capsella rubella HOM05D003772 ORTHO05D004509 1.2e-06 57.0 132 33.3
AUR62042887 Chenopodium quinoa HOM05D003772 ORTHO05D004509 1.2e-06 57.0 92 39.1
Glyma.12G204900 Glycine max HOM05D003772 ORTHO05D004509 1.2e-06 57.0 91 40.7
Aa31LG2G22190 Aethionema arabicum HOM05D003772 ORTHO05D004509 1.6e-06 56.6 136 32.4
AL7G24270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 1.6e-06 56.6 132 32.6
AT4G28330 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 1.6e-06 56.6 132 32.6
Nn2g11947 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.6e-06 56.6 44 68.2
SalBow8G1020 Salvia bowleyana HOM05D003772 ORTHO05D004509 1.6e-06 56.6 61 49.2
AL6G49180 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 2.0e-06 56.2 90 41.1
Peaxi162Scf00089g01344 Petunia axillaris HOM05D000048 ORTHO05D000207 2.0e-06 56.2 109 37.6
Atru.chr9.2574 Acer truncatum HOM05D003157 ORTHO05D004447 3.5e-06 55.5 41 73.2
BcaC07g42231 Brassica carinata HOM05D003772 ORTHO05D004509 3.5e-06 55.5 90 42.2
BcaC07g42232 Brassica carinata HOM05D003772 ORTHO05D004509 3.5e-06 55.5 90 42.2
Aa31LG1G8940 Aethionema arabicum HOM05D003772 ORTHO05D004509 4.5e-06 55.1 90 41.1
AL1G13270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 5.9e-06 54.7 90 42.2
AT1G03730 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 5.9e-06 54.7 90 42.2
Lsat_1_v5_gn_8_135800 Lactuca sativa HOM05D003772 ORTHO05D004509 5.9e-06 54.7 93 38.7
Sopen06g028050 Solanum pennellii HOM05D008378 ORTHO05D010346 5.9e-06 54.7 50 60.0
A09p68240 Brassica napus HOM05D003772 ORTHO05D004509 7.7e-06 54.3 142 33.1
BraA09t42159Z Brassica rapa HOM05D003772 ORTHO05D004509 7.7e-06 54.3 142 33.1
CARHR003060 Cardamine hirsuta HOM05D003772 ORTHO05D004509 7.7e-06 54.3 90 42.2
Thhalv10029253m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 7.7e-06 54.3 88 40.9
Peaxi162Scf00089g01325 Petunia axillaris HOM05D008378 ORTHO05D010346 7.7e-06 54.3 87 42.5


User provided reference genes

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