Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1066 Trochodendron aralioides HOM05D003344 ORTHO05D016663 5.8e-71 270.8 136 100.0
Oeu033152.2 Olea europaea HOM05D003344 ORTHO05D003981 8.8e-11 70.9 78 50.0
Ah.13g076330 Amaranthus hybridus HOM05D003344 ORTHO05D003981 2.0e-10 69.7 86 45.3
Sopen10g029790 Solanum pennellii HOM05D003344 ORTHO05D003981 9.7e-10 67.4 41 78.0
TAR369G0537 Trochodendron aralioides HOM05D003344 ORTHO05D003981 9.7e-10 67.4 41 78.0
Cc06_g16920 Coffea canephora HOM05D003344 ORTHO05D003981 1.3e-09 67.0 56 58.9
Nn7g36223 Nelumbo nucifera HOM05D003344 ORTHO05D003981 1.3e-09 67.0 60 61.7
Lju124C36T15 Lonicera japonica HOM05D003344 ORTHO05D003981 1.7e-09 66.6 41 78.0
TAR633G2745 Trochodendron aralioides HOM05D003344 ORTHO05D003981 1.7e-09 66.6 81 48.1
CAN.G641.14 Capsicum annuum HOM05D003344 ORTHO05D003981 2.2e-09 66.2 74 48.6
Nn2g15355 Nelumbo nucifera HOM05D003344 ORTHO05D003981 2.2e-09 66.2 41 78.0
Solyc10g079140.2 Solanum lycopersicum HOM05D003344 ORTHO05D003981 2.8e-09 65.9 41 75.6
Hund24725 Selenicereus undatus HOM05D003344 ORTHO05D003981 3.7e-09 65.5 41 75.6
Aqoxy2G00194 Aquilegia oxysepala HOM05D003344 ORTHO05D003981 4.8e-09 65.1 41 75.6
CSS0003950 Camellia sinensis var. sinensis HOM05D003344 ORTHO05D003981 4.8e-09 65.1 41 73.2
Nitab4.5_0002510g0010 Nicotiana tabacum HOM05D003344 ORTHO05D003981 4.8e-09 65.1 56 57.1
CAN.G543.1 Capsicum annuum HOM05D003344 ORTHO05D003981 6.3e-09 64.7 89 46.1
Sopen03g016310 Solanum pennellii HOM05D003344 ORTHO05D003981 6.3e-09 64.7 56 57.1
PGSC0003DMG400009699 Solanum tuberosum HOM05D003344 ORTHO05D003981 6.3e-09 64.7 56 57.1
AUR62024414 Chenopodium quinoa HOM05D003344 ORTHO05D003981 8.2e-09 64.3 98 39.8
Nitab4.5_0012520g0010 Nicotiana tabacum HOM05D003344 ORTHO05D003981 8.2e-09 64.3 56 57.1
Dinv18066 Davidia involucrata HOM05D003344 ORTHO05D003981 1.1e-08 63.9 41 73.2
Lsat_1_v5_gn_8_79880 Lactuca sativa HOM05D003344 ORTHO05D003981 1.1e-08 63.9 41 73.2
Lsat_1_v5_gn_9_27260 Lactuca sativa HOM05D003344 ORTHO05D003981 1.1e-08 63.9 41 70.7
Lsat_1_v5_gn_9_27300 Lactuca sativa HOM05D003344 ORTHO05D003981 1.1e-08 63.9 41 70.7
Solyc03g063600.4 Solanum lycopersicum HOM05D003344 ORTHO05D003981 1.1e-08 63.9 56 57.1
EL10Ac3g07034 Beta vulgaris HOM05D003344 ORTHO05D003981 1.4e-08 63.5 56 58.9
CDE10G0037 Ceratophyllum demersum HOM05D003344 ORTHO05D003981 1.4e-08 63.5 41 73.2
CDE10G0230 Ceratophyllum demersum HOM05D003344 ORTHO05D003981 1.4e-08 63.5 41 73.2
AUR62026008 Chenopodium quinoa HOM05D003344 ORTHO05D003981 1.4e-08 63.5 56 57.1
ECA247G3367 Erigeron canadensis HOM05D003344 ORTHO05D003981 1.4e-08 63.5 41 73.2
Lj2A380G69 Lonicera japonica HOM05D003344 ORTHO05D003981 1.4e-08 63.5 41 75.6
Os12g0515600 Oryza sativa ssp. japonica HOM05D003344 ORTHO05D003981 1.4e-08 63.5 41 70.7
Peaxi162Scf00493g00432 Petunia axillaris HOM05D003344 ORTHO05D003981 1.4e-08 63.5 56 55.4
Sc13g0001890 Simmondsia chinensis HOM05D003344 ORTHO05D003981 1.4e-08 63.5 56 58.9
PGSC0003DMG400008176 Solanum tuberosum HOM05D003344 ORTHO05D003981 1.4e-08 63.5 56 57.1
Dinv01666 Davidia involucrata HOM05D003344 ORTHO05D003981 1.8e-08 63.2 41 70.7
Rhsim03G0018000 Rhododendron simsii HOM05D003344 ORTHO05D003981 1.8e-08 63.2 41 70.7
MSTRG.19875 Avicennia marina HOM05D003344 ORTHO05D003981 2.4e-08 62.8 41 70.7
MBI02_g20545_MAGBIO Magnolia biondii HOM05D003344 ORTHO05D003981 2.4e-08 62.8 41 75.6
Oeu008130.1 Olea europaea HOM05D003344 ORTHO05D003981 2.4e-08 62.8 61 52.5
SalBow6G2365 Salvia bowleyana HOM05D003344 ORTHO05D003981 2.4e-08 62.8 41 73.2
ECA236G3208 Erigeron canadensis HOM05D003344 ORTHO05D003981 3.1e-08 62.4 41 70.7
SGA_v2.0_scaffold94G28465 Striga asiatica HOM05D003344 ORTHO05D003981 3.1e-08 62.4 41 70.7
HanXRQChr05g0132101 Helianthus annuus HOM05D003344 ORTHO05D003981 5.3e-08 61.6 41 68.3
Hma1.2p1_0247F.1_g101850 Hydrangea macrophylla HOM05D003344 ORTHO05D003981 5.3e-08 61.6 41 68.3
Hma1.2p1_0465F.1_g158430 Hydrangea macrophylla HOM05D003344 ORTHO05D003981 5.3e-08 61.6 41 73.2
vmacro22365 Vaccinium macrocarpon HOM05D003344 ORTHO05D003981 5.3e-08 61.6 41 68.3
GSVIVG01033311001 Vitis vinifera HOM05D003344 ORTHO05D003981 5.3e-08 61.6 41 70.7
Ah.04g151820 Amaranthus hybridus HOM05D003344 ORTHO05D003981 7.0e-08 61.2 100 35.0
HanXRQChr10g0300181 Helianthus annuus HOM05D003344 ORTHO05D003981 7.0e-08 61.2 42 69.0
CANSAT80G0219 Cannabis sativa HOM05D003344 ORTHO05D003981 1.5e-07 60.1 41 68.3
Migut.K00077 Erythranthe guttata HOM05D003344 ORTHO05D003981 1.5e-07 60.1 56 51.8
Zm00001eb410890 Zea mays HOM05D003344 ORTHO05D003981 2.0e-07 59.7 41 65.9
MSTRG.10824 Avicennia marina HOM05D003344 ORTHO05D003981 2.6e-07 59.3 61 49.2
Gohir.D11G328500 Gossypium hirsutum HOM05D003344 ORTHO05D003981 2.6e-07 59.3 41 65.9
Gorai.007G359800 Gossypium raimondii HOM05D003344 ORTHO05D003981 2.6e-07 59.3 41 65.9
SalBow1G1977 Salvia bowleyana HOM05D003344 ORTHO05D003981 2.6e-07 59.3 41 63.4
SalBow1G7431 Salvia bowleyana HOM05D003344 ORTHO05D003981 2.6e-07 59.3 41 63.4
CiPaw.09G036300 Carya illinoinensis HOM05D003344 ORTHO05D003981 5.9e-07 58.2 41 65.9
FvH4_6g23440 Fragaria vesca HOM05D003344 ORTHO05D003981 5.9e-07 58.2 41 65.9
FAN14G2172 Fragaria x ananassa HOM05D003344 ORTHO05D003981 5.9e-07 58.2 41 65.9
DCAR_016985 Daucus carota HOM05D003344 ORTHO05D003981 7.7e-07 57.8 41 63.4
Duzib093G1528 Durio zibethinus HOM05D003344 ORTHO05D003981 7.7e-07 57.8 41 61.0
Manes.08G049000 Manihot esculenta HOM05D003344 ORTHO05D003981 1.0e-06 57.4 42 61.9
COL.COLO4_28205 Corchorus olitorius HOM05D003344 ORTHO05D003981 1.3e-06 57.0 55 52.7
FAN02G0880 Fragaria x ananassa HOM05D003344 ORTHO05D003981 1.3e-06 57.0 41 63.4
TWI74G1434 Tripterygium wilfordii HOM05D003344 ORTHO05D003981 1.3e-06 57.0 42 64.3
VMungo0720G0250 Vigna mungo HOM05D003344 ORTHO05D003981 1.3e-06 57.0 41 65.9
Thecc.05G159400 Theobroma cacao HOM05D003344 ORTHO05D003981 1.7e-06 56.6 41 63.4
CARHR278250 Cardamine hirsuta HOM05D002737 ORTHO05D009499 2.2e-06 56.2 38 63.2
FAN09G3636 Fragaria x ananassa HOM05D003344 ORTHO05D003981 2.2e-06 56.2 41 63.4
Glyma.10G100800 Glycine max HOM05D003344 ORTHO05D003981 2.2e-06 56.2 41 65.9
HPP92_024480 Vanilla planifolia HOM05D003344 ORTHO05D003981 2.2e-06 56.2 41 61.0
Gohir.A11G311900 Gossypium hirsutum HOM05D003344 ORTHO05D003981 2.9e-06 55.8 41 61.0
MD12G1069000 Malus domestica HOM05D003344 ORTHO05D003981 2.9e-06 55.8 41 61.0
Manes.09G025300 Manihot esculenta HOM05D003344 ORTHO05D003981 2.9e-06 55.8 42 61.9
Prupe.7G065100 Prunus persica HOM05D003344 ORTHO05D003981 2.9e-06 55.8 41 61.0
Hund19160 Selenicereus undatus HOM05D003344 ORTHO05D003981 2.9e-06 55.8 56 51.8
HPP92_014270 Vanilla planifolia HOM05D003344 ORTHO05D003981 2.9e-06 55.8 41 58.5
CDE05G1884 Ceratophyllum demersum HOM05D006503 ORTHO05D008116 3.8e-06 55.5 64 45.3
FAN05G5049 Fragaria x ananassa HOM05D003344 ORTHO05D003981 3.8e-06 55.5 41 61.0
Cpa.g.sc92.27 Carica papaya HOM05D003344 ORTHO05D003981 5.0e-06 55.1 41 61.0
Gohir.A09G123600 Gossypium hirsutum HOM05D003344 ORTHO05D003981 5.0e-06 55.1 41 61.0
Gorai.006G137900 Gossypium raimondii HOM05D003344 ORTHO05D003981 5.0e-06 55.1 41 61.0
THA.LOC104802208 Tarenaya hassleriana HOM05D003344 ORTHO05D003981 5.0e-06 55.1 41 58.5
TAR623G1095 Trochodendron aralioides HOM05D003344 ORTHO05D003981 5.0e-06 55.1 61 49.2
A07p23490 Brassica napus HOM05D003344 ORTHO05D003981 6.5e-06 54.7 50 54.0
BraA07t30010Z Brassica rapa HOM05D003344 ORTHO05D003981 6.5e-06 54.7 50 54.0
MBI12_g09049_MAGBIO Magnolia biondii HOM05D029812 ORTHO05D016663 6.5e-06 54.7 38 60.5
Medtr5g018230 Medicago truncatula HOM05D006503 ORTHO05D008116 6.5e-06 54.7 62 43.5
Potri.016G054200 Populus trichocarpa HOM05D003344 ORTHO05D003981 6.5e-06 54.7 41 56.1
SEGI_06255 Sequoiadendron giganteum HOM05D003344 ORTHO05D003981 6.5e-06 54.7 41 65.9
AagrBONN_evm.TU.Sc2ySwM_344.2093 Anthoceros agrestis HOM05D003344 ORTHO05D003981 8.5e-06 54.3 41 56.1
TWI53G1076 Tripterygium wilfordii HOM05D003344 ORTHO05D003981 8.5e-06 54.3 42 61.9


User provided reference genes

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