Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1052 Trochodendron aralioides HOM05D004080 ORTHO05D004855 1.1e-111 406.8 218 100.0
TAR383G0367 Trochodendron aralioides HOM05D004080 ORTHO05D004855 2.0e-20 103.6 58 86.2
MBI13_g01688_MAGBIO Magnolia biondii HOM05D004080 ORTHO05D004855 4.4e-20 102.4 58 84.5
Nn6g35722 Nelumbo nucifera HOM05D004080 ORTHO05D004855 5.7e-20 102.1 58 84.5
Potri.003G072100 Populus trichocarpa HOM05D004080 ORTHO05D004855 5.7e-20 102.1 58 84.5
TAR626G1035 Trochodendron aralioides HOM05D004080 ORTHO05D004855 5.7e-20 102.1 58 84.5
MD17G1153700 Malus domestica HOM05D004080 ORTHO05D004855 9.7e-20 101.3 58 84.5
Aqoxy7G04172 Aquilegia oxysepala HOM05D004080 ORTHO05D004855 1.3e-19 100.9 58 82.8
PSO135G0363 Papaver somniferum HOM05D004080 ORTHO05D004855 1.3e-19 100.9 58 82.8
PSO724G0358 Papaver somniferum HOM05D004080 ORTHO05D004855 1.3e-19 100.9 58 82.8
Cfa003466 Carpinus fangiana HOM05D004080 ORTHO05D004855 1.7e-19 100.5 58 84.5
COL.COLO4_30858 Corchorus olitorius HOM05D004080 ORTHO05D004855 1.7e-19 100.5 58 84.5
Duzib235G0388 Durio zibethinus HOM05D004080 ORTHO05D004855 1.7e-19 100.5 58 84.5
Eucgr.J02599 Eucalyptus grandis HOM05D004080 ORTHO05D004855 1.7e-19 100.5 58 84.5
Manes.11G013200 Manihot esculenta HOM05D004080 ORTHO05D004855 1.7e-19 100.5 58 84.5
PGR102G0694 Punica granatum HOM05D004080 ORTHO05D004855 1.7e-19 100.5 58 84.5
Rhsim08G0244100 Rhododendron simsii HOM05D004080 ORTHO05D004855 1.7e-19 100.5 58 84.5
Sabra01G0129400 Salix brachista HOM05D004080 ORTHO05D004855 1.7e-19 100.5 58 84.5
vmacro15082 Vaccinium macrocarpon HOM05D004080 ORTHO05D004855 1.7e-19 100.5 58 84.5
GSVIVG01016675001 Vitis vinifera HOM05D004080 ORTHO05D004855 1.7e-19 100.5 58 84.5
CSS0029048 Camellia sinensis var. sinensis HOM05D004080 ORTHO05D004855 2.2e-19 100.1 58 84.5
SGA_v2.0_scaffold71G23916 Striga asiatica HOM05D004080 ORTHO05D004855 2.8e-19 99.8 58 82.8
Atru.chr1.4109 Acer truncatum HOM05D004080 ORTHO05D004855 3.7e-19 99.4 58 82.8
CiPaw.02G131500 Carya illinoinensis HOM05D004080 ORTHO05D004855 4.8e-19 99.0 58 82.8
Ciclev10025790m.g Citrus clementina HOM05D004080 ORTHO05D004855 4.8e-19 99.0 58 82.8
Cc04_g00780 Coffea canephora HOM05D004080 ORTHO05D004855 4.8e-19 99.0 58 82.8
DCAR_007657 Daucus carota HOM05D004080 ORTHO05D004855 4.8e-19 99.0 58 82.8
Oeu013440.1 Olea europaea HOM05D004080 ORTHO05D004855 4.8e-19 99.0 58 82.8
SalBow6G1171 Salvia bowleyana HOM05D004080 ORTHO05D004855 4.8e-19 99.0 58 82.8
SalBow7G2362 Salvia bowleyana HOM05D004080 ORTHO05D004855 4.8e-19 99.0 58 82.8
PGSC0003DMG400028851 Solanum tuberosum HOM05D004080 ORTHO05D004855 4.8e-19 99.0 58 82.8
SGA_v2.0_scaffold4G02093 Striga asiatica HOM05D004080 ORTHO05D004855 4.8e-19 99.0 58 82.8
Thecc.06G129400 Theobroma cacao HOM05D004080 ORTHO05D004855 4.8e-19 99.0 58 82.8
CANSAT56G1857 Cannabis sativa HOM05D004080 ORTHO05D004855 8.2e-19 98.2 58 82.8
Haze_16125 Corylus avellana HOM05D004080 ORTHO05D004855 8.2e-19 98.2 58 82.8
Migut.D00915 Erythranthe guttata HOM05D004080 ORTHO05D004855 8.2e-19 98.2 58 82.8
MD09G1173400 Malus domestica HOM05D004080 ORTHO05D004855 8.2e-19 98.2 58 82.8
Prupe.3G031500 Prunus persica HOM05D004080 ORTHO05D004855 8.2e-19 98.2 58 82.8
QL05p001373 Quercus lobata HOM05D004080 ORTHO05D004855 8.2e-19 98.2 58 82.8
RcHm_v2.0_Chr2g0147751 Rosa chinensis HOM05D004080 ORTHO05D004855 8.2e-19 98.2 58 82.8
Solyc12g049580.2 Solanum lycopersicum HOM05D004080 ORTHO05D004855 8.2e-19 98.2 58 82.8
CAN.G1073.7 Capsicum annuum HOM05D004080 ORTHO05D004855 1.1e-18 97.8 58 81.0
Sabra03G0042900 Salix brachista HOM05D004080 ORTHO05D004855 1.1e-18 97.8 58 82.8
Sopen12g024050 Solanum pennellii HOM05D004080 ORTHO05D004855 1.1e-18 97.8 58 81.0
Sopen12g024060 Solanum pennellii HOM05D004080 ORTHO05D004855 1.1e-18 97.8 58 81.0
HPP92_011073 Vanilla planifolia HOM05D004080 ORTHO05D004855 1.1e-18 97.8 58 79.3
MSTRG.22520 Avicennia marina HOM05D004080 ORTHO05D004855 1.4e-18 97.4 58 81.0
AUR62001413 Chenopodium quinoa HOM05D004080 ORTHO05D004855 1.4e-18 97.4 58 79.3
AUR62025622 Chenopodium quinoa HOM05D004080 ORTHO05D004855 1.4e-18 97.4 58 79.3
Duzib192G0957 Durio zibethinus HOM05D004080 ORTHO05D004855 1.4e-18 97.4 58 81.0
Hma1.2p1_0229F.1_g097040 Hydrangea macrophylla HOM05D004080 ORTHO05D004855 1.4e-18 97.4 58 81.0
arahy.Tifrunner.gnm1.ann1.L3RKN8 Arachis hypogaea HOM05D004080 ORTHO05D004855 1.8e-18 97.1 58 81.0
arahy.Tifrunner.gnm1.ann1.Z4XL8W Arachis hypogaea HOM05D004080 ORTHO05D004855 1.8e-18 97.1 58 81.0
FAN02G3159 Fragaria x ananassa HOM05D004080 ORTHO05D004855 1.8e-18 97.1 58 81.0
FAN05G3978 Fragaria x ananassa HOM05D004080 ORTHO05D004855 1.8e-18 97.1 58 81.0
FAN09G4052 Fragaria x ananassa HOM05D004080 ORTHO05D004855 1.8e-18 97.1 58 81.0
FAN14G5022 Fragaria x ananassa HOM05D004080 ORTHO05D004855 1.8e-18 97.1 58 81.0
Glyma.03G263500 Glycine max HOM05D004080 ORTHO05D004855 1.8e-18 97.1 58 81.0
Glyma.19G262500 Glycine max HOM05D004080 ORTHO05D004855 1.8e-18 97.1 58 81.0
Lj9A537G36 Lonicera japonica HOM05D004080 ORTHO05D004855 1.8e-18 97.1 58 81.0
Lalb_Chr18g0044901 Lupinus albus HOM05D004080 ORTHO05D004855 1.8e-18 97.1 58 81.0
Phvul.009G262000 Phaseolus vulgaris HOM05D004080 ORTHO05D004855 1.8e-18 97.1 58 81.0
VMungo1309G1832 Vigna mungo HOM05D004080 ORTHO05D004855 1.8e-18 97.1 58 81.0
arahy.Tifrunner.gnm1.ann1.E9FGF4 Arachis hypogaea HOM05D004080 ORTHO05D004855 2.4e-18 96.7 58 81.0
arahy.Tifrunner.gnm1.ann1.I2K3PU Arachis hypogaea HOM05D004080 ORTHO05D004855 2.4e-18 96.7 58 81.0
Ca_23429_v3 Cicer arietinum L. HOM05D004080 ORTHO05D004855 2.4e-18 96.7 58 81.0
ClCG09G001360 Citrullus lanatus HOM05D004080 ORTHO05D004855 2.4e-18 96.7 58 81.0
MELO3C024310.2 Cucumis melo HOM05D004080 ORTHO05D004855 2.4e-18 96.7 58 81.0
CsaV3_7G033970 Cucumis sativus L. HOM05D004080 ORTHO05D004855 2.4e-18 96.7 58 81.0
Glyma.07G045300 Glycine max HOM05D004080 ORTHO05D004855 2.4e-18 96.7 58 81.0
Gohir.D05G143600 Gossypium hirsutum HOM05D004080 ORTHO05D004855 2.4e-18 96.7 58 79.3
Gorai.009G147500 Gossypium raimondii HOM05D004080 ORTHO05D004855 2.4e-18 96.7 58 79.3
Lalb_Chr17g0343291 Lupinus albus HOM05D004080 ORTHO05D004855 2.4e-18 96.7 58 81.0
Medtr8g023040 Medicago truncatula HOM05D004080 ORTHO05D004855 2.4e-18 96.7 58 81.0
Psat4g165760 Pisum sativum HOM05D004080 ORTHO05D004855 2.4e-18 96.7 58 81.0
Sed0028223 Sechium edule HOM05D004080 ORTHO05D004855 2.4e-18 96.7 58 81.0
Lsat_1_v5_gn_4_92141 Lactuca sativa HOM05D004080 ORTHO05D004855 3.1e-18 96.3 58 81.0
Phvul.010G123700 Phaseolus vulgaris HOM05D004080 ORTHO05D004855 3.1e-18 96.3 58 79.3
TWI14G1096 Tripterygium wilfordii HOM05D004080 ORTHO05D004855 3.1e-18 96.3 58 81.0
TWI23G0788 Tripterygium wilfordii HOM05D004080 ORTHO05D004855 3.1e-18 96.3 58 81.0
EL10Ac7g16485 Beta vulgaris HOM05D004080 ORTHO05D004855 4.1e-18 95.9 58 77.6
Lj1g0023220 Lotus japonicus HOM05D004080 ORTHO05D004855 4.1e-18 95.9 58 79.3
Os12g0497400 Oryza sativa ssp. japonica HOM05D004080 ORTHO05D004855 4.1e-18 95.9 58 79.3
Potri.001G163300 Populus trichocarpa HOM05D004080 ORTHO05D004855 4.1e-18 95.9 58 81.0
THA.LOC104815600 Tarenaya hassleriana HOM05D004080 ORTHO05D004855 4.1e-18 95.9 58 81.0
Lsat_1_v5_gn_1_39161 Lactuca sativa HOM05D004080 ORTHO05D004855 5.3e-18 95.5 58 81.0
ATR0099G064 Amborella trichopoda HOM05D004080 ORTHO05D004855 7.0e-18 95.1 58 77.6
ECA247G2052 Erigeron canadensis HOM05D004080 ORTHO05D004855 7.0e-18 95.1 58 79.3
Cpa.g.sc25.185 Carica papaya HOM05D004080 ORTHO05D004855 9.1e-18 94.7 58 79.3
Lj3g0001023 Lotus japonicus HOM05D004080 ORTHO05D004855 9.1e-18 94.7 58 79.3
Oeu006748.1 Olea europaea HOM05D004080 ORTHO05D004855 9.1e-18 94.7 58 77.6
Zm00001eb138200 Zea mays HOM05D004080 ORTHO05D004855 9.1e-18 94.7 58 79.3
Atru.chr10.1447 Acer truncatum HOM05D004080 ORTHO05D004855 1.2e-17 94.4 58 77.6
Gohir.A06G194600 Gossypium hirsutum HOM05D004080 ORTHO05D004855 2.0e-17 93.6 58 79.3
Gohir.D06G202300 Gossypium hirsutum HOM05D004080 ORTHO05D004855 2.0e-17 93.6 58 79.3
Gorai.010G236200 Gossypium raimondii HOM05D004080 ORTHO05D004855 2.0e-17 93.6 58 79.3
BcaB02g10878 Brassica carinata HOM05D004080 ORTHO05D004855 4.5e-17 92.4 58 75.9
AL2G32020 Arabidopsis lyrata HOM05D004080 ORTHO05D004855 5.9e-17 92.0 58 77.6
AT1G72340 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 5.9e-17 92.0 58 77.6
BcaB05g24748 Brassica carinata HOM05D004080 ORTHO05D004855 5.9e-17 92.0 58 77.6
BcaC03g15371 Brassica carinata HOM05D004080 ORTHO05D004855 5.9e-17 92.0 58 77.6
A02p17960 Brassica napus HOM05D004080 ORTHO05D004855 5.9e-17 92.0 58 77.6
A07p38520 Brassica napus HOM05D004080 ORTHO05D004855 5.9e-17 92.0 58 77.6
C02p29850 Brassica napus HOM05D004080 ORTHO05D004855 5.9e-17 92.0 58 77.6
BolC2t09033H Brassica oleracea HOM05D004080 ORTHO05D004855 5.9e-17 92.0 58 77.6
BraA02t06843Z Brassica rapa HOM05D004080 ORTHO05D004855 5.9e-17 92.0 58 77.6
BraA07t31412Z Brassica rapa HOM05D004080 ORTHO05D004855 5.9e-17 92.0 58 77.6
Thhalv10018714m.g Eutrema salsugineum HOM05D004080 ORTHO05D004855 5.9e-17 92.0 58 77.6
Ah.08g217320 Amaranthus hybridus HOM05D004080 ORTHO05D004855 7.7e-17 91.7 58 74.1
BcaC08g43566 Brassica carinata HOM05D004080 ORTHO05D004855 7.7e-17 91.7 58 74.1
A06p00710 Brassica napus HOM05D004080 ORTHO05D004855 7.7e-17 91.7 58 74.1
C06p09640 Brassica napus HOM05D004080 ORTHO05D004855 7.7e-17 91.7 58 74.1
BolC6t36036H Brassica oleracea HOM05D004080 ORTHO05D004855 7.7e-17 91.7 58 74.1
Carub.0002s1920 Capsella rubella HOM05D004080 ORTHO05D004855 7.7e-17 91.7 58 75.9
CARHR065250 Cardamine hirsuta HOM05D004080 ORTHO05D004855 7.7e-17 91.7 58 75.9
Sp1g40370 Schrenkiella parvula HOM05D004080 ORTHO05D004855 7.7e-17 91.7 58 74.1
C06p46700 Brassica napus HOM05D004080 ORTHO05D004855 1.3e-16 90.9 58 77.6
BolC6t39715H Brassica oleracea HOM05D004080 ORTHO05D004855 1.3e-16 90.9 58 77.6
Sp5g27430 Schrenkiella parvula HOM05D004080 ORTHO05D004855 1.3e-16 90.9 58 75.9
TPR.G18158 Trifolium pratense HOM05D004080 ORTHO05D004855 1.3e-16 90.9 58 74.1
Aa31LG4G2700 Aethionema arabicum HOM05D001342 ORTHO05D004855 1.7e-16 90.5 58 75.9
AT1G53880 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 1.7e-16 90.5 58 74.1
AT1G53900 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 1.7e-16 90.5 58 74.1
Carub.0001s4316 Capsella rubella HOM05D004080 ORTHO05D004855 1.7e-16 90.5 58 74.1
BcaB03g14982 Brassica carinata HOM05D004080 ORTHO05D004855 2.2e-16 90.1 58 75.9
CARHR044200 Cardamine hirsuta HOM05D004080 ORTHO05D004855 2.9e-16 89.7 58 74.1
Thhalv10011350m.g Eutrema salsugineum HOM05D004080 ORTHO05D004855 2.9e-16 89.7 58 72.4
BolC6t36718H Brassica oleracea HOM05D004080 ORTHO05D004855 3.8e-16 89.4 58 74.1
AL1G62590 Arabidopsis lyrata HOM05D004080 ORTHO05D004855 5.0e-16 89.0 58 72.4
BcaB07g33281 Brassica carinata HOM05D004080 ORTHO05D004855 1.1e-15 87.8 57 73.7
Atru.chr4.1739 Acer truncatum HOM05D004080 ORTHO05D004855 1.5e-15 87.4 55 78.2
Actinidia24432 Actinidia chinensis HOM05D004080 ORTHO05D004855 1.5e-15 87.4 58 77.6
Oeu015474.1 Olea europaea HOM05D004080 ORTHO05D004855 4.7e-14 82.4 49 77.6
BcaC08g44141 Brassica carinata HOM05D004080 ORTHO05D004855 6.1e-14 82.0 58 72.4
CDE09G0018 Ceratophyllum demersum HOM05D004080 ORTHO05D004855 1.8e-13 80.5 49 75.5
Pp3c16_17800 Physcomitrium patens HOM05D004080 ORTHO05D004855 2.3e-13 80.1 57 68.4
SEGI_17135 Sequoiadendron giganteum HOM05D004080 ORTHO05D004855 2.3e-13 80.1 57 64.9
Aa31LG10G1450 Aethionema arabicum HOM05D004080 ORTHO05D004855 3.0e-13 79.7 58 67.2
Sc12g0010900 Simmondsia chinensis HOM05D004080 ORTHO05D004855 4.0e-13 79.3 49 73.5
AagrBONN_evm.TU.Sc2ySwM_344.1526 Anthoceros agrestis HOM05D004080 ORTHO05D004855 6.7e-13 78.6 57 66.7
Pp3c5_19430 Physcomitrium patens HOM05D004080 ORTHO05D004855 1.2e-12 77.8 57 66.7
Mapoly0002s0094 Marchantia polymorpha HOM05D004080 ORTHO05D004855 1.4e-10 70.9 58 58.6
Pp3c3_36280 Physcomitrium patens HOM05D004080 ORTHO05D004855 1.4e-10 70.9 57 59.6
CDE09G1267 Ceratophyllum demersum HOM05D004080 ORTHO05D004855 2.7e-09 66.6 46 67.4
Cre16.g687518 Chlamydomonas reinhardtii HOM05D004080 ORTHO05D004855 1.1e-07 61.2 60 50.0
SMO203G0081 Selaginella moellendorffii HOM05D004080 ORTHO05D004855 1.1e-07 61.2 42 71.4
PRCOL_00001985 Prasinoderma coloniale HOM05D004080 ORTHO05D004855 1.6e-06 57.4 58 46.6


User provided reference genes

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