Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 6.0e-88 327.4 158 100.0
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 3.4e-30 135.6 96 65.6
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.7e-29 133.3 96 64.6
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 4.9e-29 131.7 99 63.6
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 4.1e-28 128.6 96 62.5
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 4.1e-28 128.6 96 62.5
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 3.5e-27 125.6 98 63.3
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 3.5e-27 125.6 96 60.4
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.7e-26 123.2 101 62.4
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 3.0e-26 122.5 96 58.3
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 3.0e-26 122.5 100 61.0
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 3.0e-26 122.5 96 60.4
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 5.6e-25 118.2 97 60.8
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 9.5e-25 117.5 96 56.2
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 1.6e-24 116.7 110 55.5
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 1.6e-24 116.7 96 56.2
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.6e-24 116.7 96 57.3
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 2.8e-24 115.9 96 58.3
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 2.8e-24 115.9 100 55.0
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 3.6e-24 115.5 96 53.1
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 6.2e-24 114.8 99 59.6
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 8.0e-24 114.4 98 56.1
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.0e-23 114.0 97 58.8
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.4e-23 113.6 98 57.1
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 1.4e-23 113.6 108 50.0
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.5e-22 110.2 97 56.7
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.0e-22 109.8 100 55.0
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.0e-22 109.8 100 55.0
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.4e-22 108.6 98 56.1
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.4e-22 108.6 98 56.1
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.4e-22 108.6 98 56.1
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 4.4e-22 108.6 98 54.1
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 7.5e-22 107.8 100 55.0
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 7.5e-22 107.8 96 56.2
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 7.5e-22 107.8 96 55.2
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 1.3e-21 107.1 94 54.3
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.7e-21 106.7 97 53.6
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.7e-21 106.7 97 53.6
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.7e-21 106.7 98 53.1
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 1.7e-21 106.7 96 55.2
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.9e-21 105.9 99 57.6
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.9e-21 105.9 99 57.6
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 2.9e-21 105.9 96 54.2
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 2.9e-21 105.9 98 55.1
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.9e-21 105.9 98 56.1
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 3.7e-21 105.5 97 56.7
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 6.4e-21 104.8 96 51.0
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 6.4e-21 104.8 97 52.6
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 1.9e-20 103.2 98 51.0
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.9e-20 103.2 93 54.8
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 2.4e-20 102.8 97 55.7
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 3.2e-20 102.4 99 51.5
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 4.1e-20 102.1 94 54.3
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 4.1e-20 102.1 98 53.1
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 5.4e-20 101.7 97 51.5
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 5.4e-20 101.7 107 57.0
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 1.2e-19 100.5 97 53.6
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 1.6e-19 100.1 97 51.5
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.0e-19 99.8 98 53.1
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 2.0e-19 99.8 102 52.9
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.5e-19 99.0 98 52.0
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 4.6e-19 98.6 99 50.5
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.6e-19 98.6 98 52.0
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 4.6e-19 98.6 98 53.1
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 1.3e-18 97.1 98 54.1
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 3.0e-18 95.9 90 52.2
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 3.0e-18 95.9 101 53.5
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 6.6e-18 94.7 98 53.1
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 6.6e-18 94.7 98 53.1
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 6.6e-18 94.7 86 55.8
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 8.6e-18 94.4 111 49.5
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.5e-17 93.6 97 52.6
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 1.5e-17 93.6 82 53.7
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.5e-17 92.8 99 51.5
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 4.3e-17 92.0 97 50.5
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 5.6e-17 91.7 96 51.0
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 9.5e-17 90.9 96 50.0
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.6e-16 90.1 98 44.9
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 3.6e-16 89.0 97 49.5
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 4.7e-16 88.6 100 51.0
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 1.1e-15 87.4 85 57.6
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 1.1e-15 87.4 111 46.8
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.4e-15 87.0 81 54.3
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 1.5e-14 83.6 104 43.3
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 1.5e-14 83.6 96 43.8
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.0e-14 83.2 96 45.8
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 2.0e-14 83.2 101 47.5
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.6e-14 82.8 100 43.0
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 3.4e-14 82.4 75 54.7
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.4e-14 82.0 96 42.7
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 5.8e-14 81.6 96 42.7
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 9.8e-14 80.9 80 45.0
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 9.8e-14 80.9 80 45.0
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 1.3e-13 80.5 102 43.1
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 1.3e-13 80.5 103 42.7
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.7e-13 80.1 96 42.7
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 2.9e-13 79.3 96 41.7
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 2.9e-13 79.3 97 48.5
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 3.7e-13 79.0 96 42.7
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.7e-13 79.0 104 43.3
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 3.7e-13 79.0 88 48.9
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 4.9e-13 78.6 96 39.6
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 4.9e-13 78.6 97 41.2
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.9e-13 78.6 104 43.3
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 6.4e-13 78.2 84 50.0
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 8.3e-13 77.8 97 41.2
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 1.1e-12 77.4 98 38.8
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 1.1e-12 77.4 96 41.7
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 1.1e-12 77.4 96 41.7
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.9e-12 76.6 96 41.7
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 1.9e-12 76.6 96 41.7
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 1.9e-12 76.6 88 48.9
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 1.9e-12 76.6 104 42.3
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 2.4e-12 76.3 96 40.6
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 2.4e-12 76.3 96 40.6
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 2.4e-12 76.3 96 40.6
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 2.4e-12 76.3 97 37.1
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 2.4e-12 76.3 96 40.6
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 2.4e-12 76.3 96 40.6
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 2.4e-12 76.3 50 64.0
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 2.4e-12 76.3 96 40.6
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 2.4e-12 76.3 99 41.4
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 4.1e-12 75.5 81 43.2
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 5.4e-12 75.1 100 41.0
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 9.2e-12 74.3 96 39.6
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 9.2e-12 74.3 97 41.2
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.6e-11 73.6 97 42.3
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 4.6e-11 72.0 104 39.4
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 4.6e-11 72.0 62 51.6
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 6.0e-11 71.6 105 37.1
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 5.1e-10 68.6 98 40.8
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 8.6e-10 67.8 91 38.5
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 8.6e-10 67.8 100 39.0
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.5e-09 67.0 90 43.3
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 1.5e-09 67.0 90 46.7
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 7.3e-09 64.7 96 38.5
MBI16_g31702_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 4.7e-08 62.0 95 36.8
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.1e-07 60.8 98 32.7
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 2.3e-07 59.7 86 45.3
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 4.4e-06 55.5 82 39.0


User provided reference genes

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