Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 4.6e-85 317.8 153 100.0
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 2.6e-51 205.7 153 65.4
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 1.4e-49 199.9 154 66.9
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 9.1e-49 197.2 154 64.9
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 2.7e-48 195.7 154 62.3
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 2.2e-47 192.6 159 59.7
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 1.9e-46 189.5 156 61.5
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.2e-45 186.8 157 63.1
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.2e-45 186.8 157 63.1
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.7e-45 185.7 155 63.2
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.5e-43 179.9 157 56.7
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 5.7e-43 177.9 164 56.1
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 7.5e-43 177.6 158 58.2
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 6.3e-42 174.5 164 55.5
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 6.3e-42 174.5 157 56.7
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 3.1e-41 172.2 162 58.6
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 4.1e-41 171.8 165 56.4
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 7.0e-41 171.0 156 57.1
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 7.0e-41 171.0 154 59.1
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 9.2e-41 170.6 165 55.8
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 1.6e-40 169.9 159 55.3
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.6e-40 169.9 154 56.5
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 2.7e-40 169.1 154 58.4
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 5.9e-40 167.9 159 52.2
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 1.0e-39 167.2 157 54.1
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 1.0e-39 167.2 159 52.2
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 1.0e-39 167.2 161 55.3
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 1.3e-39 166.8 157 53.5
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.7e-39 166.4 157 56.1
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.7e-39 166.4 159 52.2
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 2.3e-39 166.0 158 55.7
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 2.9e-39 165.6 158 57.0
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 5.0e-39 164.9 157 53.5
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.9e-38 162.9 158 52.5
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.9e-38 162.9 163 50.9
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 3.3e-38 162.2 155 53.5
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 4.3e-38 161.8 166 54.2
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 5.6e-38 161.4 164 50.6
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 5.6e-38 161.4 153 53.6
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 5.6e-38 161.4 153 53.6
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 9.5e-38 160.6 171 51.5
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 1.2e-37 160.2 163 54.0
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 1.2e-37 160.2 193 47.7
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 2.8e-37 159.1 154 55.8
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 2.8e-37 159.1 197 45.2
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 6.1e-37 157.9 195 47.2
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 6.1e-37 157.9 156 50.6
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 6.1e-37 157.9 157 56.1
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 8.0e-37 157.5 154 52.6
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 8.0e-37 157.5 154 54.5
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 1.4e-36 156.8 161 52.8
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 2.3e-36 156.0 154 53.2
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 2.3e-36 156.0 163 47.9
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.0e-36 155.6 154 53.2
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 3.0e-36 155.6 155 49.7
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 6.8e-36 154.5 178 47.8
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 8.9e-36 154.1 154 53.2
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.5e-35 153.3 158 51.9
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 2.6e-35 152.5 163 51.5
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.6e-35 152.5 157 50.3
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 2.6e-35 152.5 156 51.9
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 3.4e-35 152.1 160 50.6
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 4.4e-35 151.8 157 50.3
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 4.4e-35 151.8 164 50.6
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 5.7e-35 151.4 161 53.4
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 7.5e-35 151.0 154 51.9
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 7.5e-35 151.0 163 46.0
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 7.5e-35 151.0 168 51.2
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 9.8e-35 150.6 158 53.2
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 9.8e-35 150.6 156 50.6
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 2.2e-34 149.4 163 49.7
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 2.9e-34 149.1 163 49.7
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 2.9e-34 149.1 163 49.7
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.9e-34 149.1 157 49.7
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 3.7e-34 148.7 160 49.4
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 4.9e-34 148.3 147 55.8
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 6.4e-34 147.9 176 50.0
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 1.1e-33 147.1 163 49.7
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.4e-33 146.7 161 49.1
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 1.8e-33 146.4 163 49.1
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.4e-33 146.0 158 49.4
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 3.2e-33 145.6 161 52.2
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 9.2e-33 144.1 163 48.5
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 1.2e-32 143.7 167 49.1
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 1.6e-32 143.3 156 50.6
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.6e-32 143.3 171 46.2
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 2.7e-32 142.5 159 46.5
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 2.7e-32 142.5 159 46.5
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 3.5e-32 142.1 158 49.4
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 5.9e-32 141.4 163 47.9
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 2.3e-31 139.4 223 39.9
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 3.0e-31 139.0 161 46.0
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 8.6e-31 137.5 161 46.0
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 1.1e-30 137.1 161 49.1
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 1.1e-30 137.1 158 47.5
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 1.5e-30 136.7 134 55.2
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 4.3e-30 135.2 159 47.2
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 4.3e-30 135.2 167 45.5
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 9.5e-30 134.0 161 46.0
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 1.6e-29 133.3 244 37.3
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 2.1e-29 132.9 146 51.4
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 3.6e-29 132.1 163 45.4
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 8.0e-29 131.0 171 43.9
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.0e-28 130.6 168 44.0
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 6.8e-28 127.9 164 45.1
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 8.9e-28 127.5 267 34.1
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 7.5e-27 124.4 158 46.2
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 1.3e-26 123.6 217 37.3
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 2.2e-26 122.9 81 70.4
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 2.9e-26 122.5 159 43.4
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 3.7e-26 122.1 156 41.7
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 8.3e-26 120.9 155 46.5
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 1.1e-25 120.6 200 38.5
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 4.1e-25 118.6 153 45.8
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 4.1e-25 118.6 162 44.4
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 2.7e-24 115.9 160 43.1
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 2.3e-23 112.8 115 50.4
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 3.0e-23 112.5 113 50.4
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 3.9e-23 112.1 159 42.1
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 5.0e-23 111.7 154 45.5
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 6.6e-23 111.3 151 48.3
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.1e-22 110.5 156 45.5
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 1.9e-22 109.8 155 45.2
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 1.9e-22 109.8 153 41.8
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 4.3e-22 108.6 154 44.8
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 7.3e-22 107.8 154 44.8
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 1.6e-21 106.7 153 43.8
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 1.6e-21 106.7 153 43.8
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 1.6e-21 106.7 150 44.7
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 3.6e-21 105.5 144 45.8
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 3.6e-21 105.5 146 46.6
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 4.7e-21 105.1 153 43.1
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 6.2e-21 104.8 150 45.3
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 8.1e-21 104.4 153 45.1
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 1.4e-20 103.6 81 58.0
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 1.8e-20 103.2 150 44.7
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 1.8e-20 103.2 147 47.6
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 1.8e-20 103.2 150 44.7
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 3.1e-20 102.4 143 42.7
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 5.2e-20 101.7 79 60.8
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 1.2e-19 100.5 165 38.2
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.5e-19 100.1 156 42.9
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 2.9e-18 95.9 153 37.3
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 1.9e-17 93.2 115 48.7
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 9.2e-17 90.9 90 48.9
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 1.6e-16 90.1 78 53.8
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 5.6e-14 81.6 80 50.0
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 9.5e-14 80.9 100 42.0
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 8.1e-13 77.8 109 41.3
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 2.3e-12 76.3 139 36.0
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 2.6e-11 72.8 99 40.4
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 2.9e-10 69.3 88 46.6
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.9e-09 66.6 90 38.9
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 2.4e-09 66.2 44 70.5
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.2e-09 65.9 73 52.1
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 3.2e-09 65.9 80 46.2
Actinidia03382 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.3e-07 59.7 43 62.8
Zm00001eb373750 Zea mays HOM05D009386 ORTHO05D011419 1.5e-06 57.0 35 71.4


User provided reference genes

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