Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 3.6e-272 941.0 499 100.0
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 7.6e-161 571.2 526 62.2
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 7.9e-142 508.1 513 58.1
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 4.3e-132 475.7 520 53.1
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 6.3e-131 471.9 529 52.2
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 3.1e-130 469.5 523 52.6
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 1.6e-126 457.2 520 53.1
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 1.6e-126 457.2 485 55.9
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 6.1e-126 455.3 512 52.5
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.0e-125 454.5 506 53.4
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 6.7e-125 451.8 506 53.8
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 1.8e-122 443.7 552 50.4
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 4.1e-122 442.6 507 51.9
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 2.9e-120 436.4 510 50.6
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.4e-119 434.1 520 50.0
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.4e-119 434.1 505 51.7
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 1.4e-119 434.1 506 51.8
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 2.5e-119 433.3 514 52.1
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 5.5e-119 432.2 516 50.0
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 7.2e-119 431.8 505 51.3
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.1e-116 424.5 537 50.1
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.1e-116 424.5 537 50.1
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 2.6e-116 423.3 525 50.1
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 5.7e-116 422.2 523 47.0
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 7.4e-116 421.8 509 48.3
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 9.7e-116 421.4 524 49.4
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 2.2e-115 420.2 502 50.8
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 6.3e-115 418.7 531 48.4
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 6.3e-115 418.7 533 47.8
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 3.1e-114 416.4 523 48.9
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 7.0e-114 415.2 516 48.4
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 1.2e-113 414.5 507 49.7
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.6e-113 413.3 520 47.3
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 5.9e-113 412.1 519 47.4
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 3.8e-112 409.5 524 47.9
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 5.0e-112 409.1 516 47.9
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.9e-111 407.1 513 46.8
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 1.9e-111 407.1 524 47.3
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 5.5e-111 405.6 508 47.8
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 7.2e-111 405.2 507 47.9
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 9.4e-111 404.8 507 47.7
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 9.4e-111 404.8 516 46.9
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.8e-109 400.6 505 47.7
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.8e-109 400.6 504 48.2
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 2.3e-109 400.2 508 47.2
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 5.2e-109 399.1 501 46.9
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 8.8e-109 398.3 543 46.6
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 2.0e-108 397.1 512 46.9
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.7e-107 394.0 504 45.4
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.2e-107 393.7 503 47.5
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 3.7e-107 392.9 510 47.6
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 6.3e-107 392.1 502 48.2
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 1.4e-106 391.0 506 47.2
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.4e-106 391.0 514 44.9
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.8e-106 390.6 505 46.5
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.8e-106 390.6 503 47.3
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 5.3e-106 389.0 501 48.5
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 3.5e-105 386.3 467 50.1
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.3e-104 384.4 503 47.7
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 3.8e-104 382.9 491 48.5
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 5.0e-104 382.5 505 45.7
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 8.5e-104 381.7 514 46.3
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 1.9e-103 380.6 505 45.7
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 1.9e-103 380.6 505 45.7
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 1.9e-103 380.6 548 44.9
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 3.2e-103 379.8 506 45.8
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.2e-102 377.9 512 48.0
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 1.6e-102 377.5 499 45.5
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 1.6e-102 377.5 501 45.9
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 4.7e-102 375.9 507 45.6
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 2.3e-101 373.6 509 45.4
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 7.5e-100 368.6 559 43.3
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 7.5e-100 368.6 511 45.4
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 1.3e-99 367.9 436 50.2
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 1.3e-99 367.9 481 46.2
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 2.2e-99 367.1 507 44.8
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.2e-99 367.1 507 44.8
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 4.8e-99 365.9 517 45.1
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 8.3e-99 365.2 514 45.3
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 1.8e-98 364.0 367 56.7
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 4.1e-98 362.8 480 45.4
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 9.1e-98 361.7 508 45.9
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 2.7e-97 360.1 486 46.7
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 3.5e-97 359.8 511 44.8
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 4.5e-97 359.4 504 43.1
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 1.0e-96 358.2 436 48.4
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 6.5e-96 355.5 434 49.1
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 8.5e-96 355.1 500 42.6
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.9e-95 354.0 433 46.2
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.9e-95 354.0 433 46.2
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 1.2e-94 351.3 477 44.0
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 4.7e-94 349.4 505 44.4
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 6.8e-93 345.5 480 44.2
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 4.1e-90 336.3 522 43.7
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 1.3e-88 331.3 505 41.4
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 1.1e-87 328.2 506 43.1
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 3.6e-86 323.2 369 49.6
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.5e-84 317.8 237 70.0
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 9.8e-84 315.1 505 40.2
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 1.2e-81 308.1 500 40.4
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.7e-81 307.0 340 52.9
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 3.9e-80 303.1 501 40.3
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.5e-79 301.2 504 41.1
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 1.9e-79 300.8 502 41.6
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 1.8e-77 294.3 507 39.4
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 4.0e-77 293.1 504 39.9
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.2e-75 287.3 500 40.2
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 3.7e-75 286.6 500 40.0
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.4e-74 284.6 488 40.2
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 3.5e-73 280.0 423 46.8
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.0e-72 278.5 500 37.6
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 1.2e-70 271.6 511 38.2
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 5.2e-69 266.2 471 38.9
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.5e-68 264.6 438 38.6
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 6.6e-64 249.2 379 39.8
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 3.1e-61 240.4 479 35.9
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 1.4e-58 231.5 503 32.2
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 1.4e-58 231.5 496 36.7
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 1.2e-57 228.4 733 28.8
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 3.3e-55 220.3 514 34.2
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 4.3e-55 219.9 471 34.2
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 4.4e-52 209.9 446 34.1
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 9.9e-52 208.8 404 35.4
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 2.1e-49 201.1 640 28.6
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.2e-44 185.3 216 47.7
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.6e-41 174.9 312 39.7
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 2.1e-41 174.5 419 34.6
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.9e-39 167.9 212 46.7
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 4.8e-38 163.3 502 29.9
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 1.2e-36 158.7 212 43.4
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 4.9e-35 153.3 147 52.4
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 9.0e-29 132.5 585 24.1
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.2e-28 132.1 220 38.6
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 2.6e-28 131.0 586 24.1
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 7.6e-28 129.4 210 41.4
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 4.9e-27 126.7 153 49.7
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.5e-23 115.2 166 38.6
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.8e-21 108.2 228 35.1
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 5.3e-21 106.7 213 35.7
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 5.9e-20 103.2 210 37.6
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 7.6e-20 102.8 91 52.7
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 5.0e-19 100.1 159 37.1
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 5.5e-18 96.7 140 36.4
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 5.5e-18 96.7 211 33.6
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 1.2e-17 95.5 132 43.9
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 1.0e-16 92.4 526 23.8
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 1.0e-16 92.4 74 54.1
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 3.9e-16 90.5 580 24.3
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 5.1e-16 90.1 230 30.9
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 6.7e-16 89.7 182 31.3
TAR381G1314 Trochodendron aralioides HOM05D004572 ORTHO05D005425 1.2e-12 79.0 82 53.7
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 7.7e-12 76.3 117 43.6
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 1.7e-11 75.1 310 24.5
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 4.2e-10 70.5 142 35.2
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 2.7e-09 67.8 117 41.9
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 2.3e-08 64.7 106 41.5


User provided reference genes

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