Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 2.0e-52 208.8 103 100.0
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 5.2e-48 194.1 95 98.9
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 9.9e-31 136.7 79 79.7
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 6.4e-30 134.0 90 68.9
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 8.3e-30 133.7 77 77.9
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 1.1e-29 133.3 79 77.2
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 2.4e-29 132.1 79 77.2
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 5.4e-29 131.0 79 77.2
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 7.1e-29 130.6 79 75.9
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 9.2e-29 130.2 76 78.9
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 2.7e-28 128.6 79 72.2
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 3.5e-28 128.3 79 73.4
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 4.6e-28 127.9 79 74.7
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 6.0e-28 127.5 79 75.9
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 7.8e-28 127.1 79 74.7
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 7.8e-28 127.1 72 79.2
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 7.8e-28 127.1 79 78.5
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 1.3e-27 126.3 88 70.5
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.3e-27 126.3 72 79.2
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 1.3e-27 126.3 80 73.8
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 1.7e-27 125.9 79 73.4
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 2.3e-27 125.6 79 73.4
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 3.0e-27 125.2 79 72.2
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 3.0e-27 125.2 79 72.2
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 3.9e-27 124.8 72 77.8
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 6.6e-27 124.0 79 69.6
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 8.6e-27 123.6 90 68.9
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.1e-26 123.2 79 69.6
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 1.1e-26 123.2 79 69.6
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.1e-26 123.2 79 72.2
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 1.1e-26 123.2 79 72.2
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 1.1e-26 123.2 79 70.9
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 1.5e-26 122.9 80 73.8
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 2.5e-26 122.1 79 69.6
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 3.3e-26 121.7 81 72.8
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 4.3e-26 121.3 79 70.9
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 5.6e-26 120.9 72 75.0
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 5.6e-26 120.9 72 75.0
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 5.6e-26 120.9 79 70.9
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 2.1e-25 119.0 72 75.0
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 2.1e-25 119.0 75 72.0
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 2.8e-25 118.6 74 74.3
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 3.6e-25 118.2 77 67.5
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 3.6e-25 118.2 63 82.5
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 4.7e-25 117.9 79 69.6
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 8.1e-25 117.1 72 72.2
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 1.1e-24 116.7 86 66.3
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 1.1e-24 116.7 70 74.3
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 1.8e-24 115.9 79 72.2
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.8e-24 115.9 86 70.9
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 3.1e-24 115.2 93 60.2
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 3.1e-24 115.2 74 73.0
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 5.2e-24 114.4 87 64.4
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 6.8e-24 114.0 71 74.6
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 1.5e-23 112.8 70 72.9
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 2.0e-23 112.5 79 64.6
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 2.0e-23 112.5 68 72.1
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 2.6e-23 112.1 68 73.5
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 2.6e-23 112.1 61 82.0
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 3.4e-23 111.7 72 70.8
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 3.4e-23 111.7 82 65.9
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.4e-23 111.7 79 68.4
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 4.4e-23 111.3 72 70.8
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 4.4e-23 111.3 79 67.1
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 4.4e-23 111.3 68 75.0
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 5.8e-23 110.9 65 72.3
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 7.6e-23 110.5 77 64.9
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 9.9e-23 110.2 88 59.1
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 1.3e-22 109.8 79 65.8
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 1.3e-22 109.8 86 66.3
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 1.3e-22 109.8 71 67.6
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.7e-22 109.4 76 65.8
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 1.7e-22 109.4 92 57.6
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.7e-22 109.4 96 57.3
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.7e-22 109.4 79 65.8
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 1.7e-22 109.4 79 65.8
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.7e-22 109.4 79 65.8
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 1.7e-22 109.4 66 74.2
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 2.2e-22 109.0 79 64.6
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 2.2e-22 109.0 69 71.0
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 2.9e-22 108.6 64 76.6
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 2.9e-22 108.6 94 61.7
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 2.9e-22 108.6 68 75.0
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 2.9e-22 108.6 88 62.5
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 3.8e-22 108.2 72 69.4
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 3.8e-22 108.2 72 69.4
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 8.4e-22 107.1 66 71.2
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 8.4e-22 107.1 51 86.3
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.1e-21 106.7 79 63.3
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.4e-21 106.3 85 61.2
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 1.9e-21 105.9 71 67.6
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.9e-21 105.9 73 69.9
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 1.9e-21 105.9 79 64.6
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 2.4e-21 105.5 66 69.7
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 3.2e-21 105.1 61 72.1
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 3.2e-21 105.1 73 65.8
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 3.2e-21 105.1 77 62.3
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 4.2e-21 104.8 66 69.7
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 4.2e-21 104.8 75 69.3
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 4.2e-21 104.8 71 71.8
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 5.4e-21 104.4 51 82.4
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 7.1e-21 104.0 58 75.9
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 7.1e-21 104.0 58 75.9
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 7.1e-21 104.0 58 77.6
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 7.1e-21 104.0 68 70.6
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 9.2e-21 103.6 73 65.8
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 9.2e-21 103.6 82 61.0
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 9.2e-21 103.6 50 86.0
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 9.2e-21 103.6 77 63.6
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.2e-20 103.2 53 81.1
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.2e-20 103.2 76 64.5
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 2.1e-20 102.4 74 64.9
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 2.7e-20 102.1 66 71.2
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 3.5e-20 101.7 64 75.0
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 3.5e-20 101.7 73 64.4
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 3.5e-20 101.7 73 64.4
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 3.5e-20 101.7 64 75.0
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 3.5e-20 101.7 64 75.0
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 3.5e-20 101.7 61 73.8
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 3.5e-20 101.7 79 60.8
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 3.5e-20 101.7 61 73.8
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 4.6e-20 101.3 74 66.2
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 6.0e-20 100.9 76 64.5
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.0e-19 100.1 61 75.4
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.0e-19 100.1 67 73.1
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 1.3e-19 99.8 74 64.9
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 2.3e-19 99.0 50 82.0
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 2.3e-19 99.0 64 73.4
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 2.3e-19 99.0 64 73.4
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 3.0e-19 98.6 74 62.2
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 3.9e-19 98.2 50 84.0
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 3.9e-19 98.2 63 73.0
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 3.9e-19 98.2 50 80.0
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 5.1e-19 97.8 77 59.7
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 5.1e-19 97.8 77 59.7
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 5.1e-19 97.8 46 87.0
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 8.7e-19 97.1 50 80.0
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.1e-18 96.7 55 78.2
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 1.5e-18 96.3 58 70.7
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 1.5e-18 96.3 58 70.7
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 1.9e-18 95.9 56 76.8
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 3.3e-18 95.1 74 62.2
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.3e-17 93.2 92 52.2
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 3.6e-17 91.7 60 63.3
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 4.8e-17 91.3 43 88.4
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 8.1e-17 90.5 91 52.7
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 2.4e-16 89.0 47 72.3
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 2.6e-15 85.5 72 56.9
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 4.4e-15 84.7 42 78.6
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 4.2e-13 78.2 65 61.5
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 7.8e-12 73.9 54 64.8
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 6.6e-11 70.9 55 60.0
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 1.4e-08 63.2 46 63.0
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 1.8e-08 62.8 62 51.6


User provided reference genes

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