Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 3.9e-79 298.1 158 100.0
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 9.7e-78 293.5 158 98.1
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 5.9e-67 257.7 158 88.6
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 2.0e-62 242.7 158 77.2
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 3.3e-62 241.9 158 78.5
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 1.7e-61 239.6 156 80.1
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.2e-61 239.2 158 77.2
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 3.7e-61 238.4 156 78.8
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 3.7e-61 238.4 150 82.0
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 4.8e-61 238.0 156 79.5
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 8.2e-61 237.3 158 77.2
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.4e-60 236.5 158 77.2
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.4e-60 236.5 157 75.8
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.8e-60 236.1 158 76.6
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 2.4e-60 235.7 158 77.8
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 5.3e-60 234.6 150 82.7
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 5.3e-60 234.6 158 76.6
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 9.1e-60 233.8 155 78.7
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 1.2e-59 233.4 146 80.1
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.0e-59 232.6 158 77.2
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 2.6e-59 232.3 142 83.1
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 2.6e-59 232.3 158 78.5
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 3.5e-59 231.9 158 75.3
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 3.5e-59 231.9 142 83.8
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 4.5e-59 231.5 158 75.9
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 1.0e-58 230.3 161 74.5
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.3e-58 229.9 158 75.9
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 1.7e-58 229.6 141 83.0
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 1.7e-58 229.6 141 83.0
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 1.7e-58 229.6 152 76.3
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 1.1e-57 226.9 147 78.9
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 1.1e-57 226.9 147 78.9
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 1.5e-57 226.5 139 85.6
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.5e-57 226.5 157 72.0
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 2.5e-57 225.7 157 75.2
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 4.2e-57 224.9 158 77.2
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 4.2e-57 224.9 157 73.9
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 4.2e-57 224.9 149 77.9
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 4.2e-57 224.9 139 85.6
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 7.2e-57 224.2 155 74.8
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 7.2e-57 224.2 149 78.5
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 9.4e-57 223.8 139 81.3
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 1.2e-56 223.4 142 80.3
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 1.6e-56 223.0 188 66.0
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.6e-56 223.0 154 76.0
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 2.7e-56 222.2 158 72.8
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 6.1e-56 221.1 138 83.3
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 1.0e-55 220.3 139 79.1
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.8e-55 219.5 141 78.0
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.3e-55 219.2 147 78.9
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 6.7e-55 217.6 143 79.0
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 6.7e-55 217.6 143 81.1
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 1.1e-54 216.9 141 77.3
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 1.1e-54 216.9 141 77.3
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 1.5e-54 216.5 142 78.9
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 1.5e-54 216.5 141 77.3
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 1.5e-54 216.5 141 77.3
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 2.0e-54 216.1 149 74.5
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 2.6e-54 215.7 141 77.3
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 2.6e-54 215.7 149 75.2
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 2.6e-54 215.7 141 78.7
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 3.3e-54 215.3 141 76.6
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 3.3e-54 215.3 141 76.6
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 4.4e-54 214.9 141 75.9
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 4.4e-54 214.9 141 75.9
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 5.7e-54 214.5 141 75.9
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 5.7e-54 214.5 141 76.6
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 5.7e-54 214.5 140 77.9
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 7.5e-54 214.2 140 77.1
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 7.5e-54 214.2 140 77.1
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 7.5e-54 214.2 140 77.1
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 7.5e-54 214.2 157 70.7
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 9.7e-54 213.8 141 78.0
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.2e-53 212.6 141 75.2
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 2.2e-53 212.6 168 69.6
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 2.2e-53 212.6 141 76.6
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 2.2e-53 212.6 141 75.9
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.8e-53 212.2 141 75.2
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.8e-53 212.2 140 76.4
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.8e-53 212.2 141 75.2
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 3.7e-53 211.8 141 76.6
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 3.7e-53 211.8 141 75.9
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.8e-53 211.5 141 74.5
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 4.8e-53 211.5 155 70.3
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 8.2e-53 210.7 131 80.9
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 8.2e-53 210.7 144 75.0
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.4e-52 209.9 141 73.8
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.4e-52 209.9 141 75.2
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 1.4e-52 209.9 146 74.0
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.3e-52 208.0 141 73.8
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 5.3e-52 208.0 157 68.2
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 9.1e-52 207.2 127 84.3
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 1.2e-51 206.8 151 71.5
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 4.5e-51 204.9 141 73.0
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 7.7e-51 204.1 131 77.9
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 7.7e-51 204.1 141 73.0
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 7.7e-51 204.1 230 53.9
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 7.7e-51 204.1 225 55.6
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 1.0e-50 203.8 157 68.8
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.0e-50 203.8 141 70.9
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 1.0e-50 203.8 208 55.8
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 1.0e-50 203.8 147 70.1
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 1.3e-50 203.4 140 73.6
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 1.3e-50 203.4 141 72.3
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 2.9e-50 202.2 199 59.3
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 2.9e-50 202.2 141 71.6
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 6.5e-50 201.1 126 84.1
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 1.9e-49 199.5 141 73.8
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 5.5e-49 198.0 120 82.5
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 2.1e-48 196.1 129 78.3
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 2.7e-48 195.7 121 81.8
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 6.1e-48 194.5 132 77.3
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 8.0e-48 194.1 184 60.9
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.3e-47 192.6 141 69.5
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 4.0e-47 191.8 243 48.6
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-46 190.3 141 68.1
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.7e-46 188.0 141 68.1
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 9.8e-46 187.2 123 79.7
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 2.8e-45 185.7 141 72.3
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-44 183.0 115 80.0
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 2.4e-44 182.6 115 80.0
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 2.4e-44 182.6 115 80.0
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 2.4e-44 182.6 115 80.0
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.6e-43 179.9 115 80.0
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 3.5e-43 178.7 115 78.3
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 5.9e-43 177.9 115 78.3
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 7.7e-43 177.6 115 78.3
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-42 176.8 115 77.4
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 8.5e-42 174.1 110 78.2
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 8.5e-42 174.1 110 78.2
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 3.2e-41 172.2 137 58.4
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-40 170.2 114 74.6
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 2.7e-40 169.1 143 58.0
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 4.7e-40 168.3 137 59.9
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 1.2e-38 163.7 144 58.3
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 3.4e-38 162.2 141 56.0
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 8.3e-37 157.5 104 80.8
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 8.3e-37 157.5 159 58.5
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.8e-36 156.4 110 75.5
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 8.6e-34 147.5 87 88.5
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 2.6e-30 136.0 88 84.1
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 7.0e-28 127.9 136 54.4
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 3.5e-27 125.6 200 41.5
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 5.9e-27 124.8 143 42.7
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.6e-24 116.7 70 84.3
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-24 116.7 71 84.5
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-24 116.7 71 84.5
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 2.8e-24 115.9 137 40.1
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.8e-24 115.9 82 63.4
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 3.6e-24 115.5 71 83.1
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 1.7e-21 106.7 77 64.9
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 4.9e-21 105.1 64 84.4
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 2.4e-20 102.8 65 81.5
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.9e-18 95.5 68 77.9
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.5e-17 92.8 68 76.5
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 9.5e-17 90.9 70 70.0
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 2.1e-16 89.7 59 71.2
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 2.1e-16 89.7 128 35.2
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.8e-16 89.4 59 71.2
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.5e-14 83.6 59 67.8
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 5.8e-14 81.6 135 30.4
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 4.9e-13 78.6 49 75.5
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.0e-10 69.3 49 73.5
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.0e-10 69.3 49 73.5
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.5e-09 67.0 53 58.5
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 3.1e-07 59.3 77 49.4


User provided reference genes

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