Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.7e-55 219.2 114 100.0
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 5.4e-54 214.2 114 98.2
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 5.1e-20 101.3 98 62.2
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 3.3e-19 98.6 105 60.0
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 4.3e-19 98.2 114 53.5
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 5.6e-19 97.8 105 56.2
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 2.8e-18 95.5 99 60.6
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 2.8e-18 95.5 97 57.7
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 3.6e-18 95.1 105 57.1
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 4.8e-18 94.7 94 60.6
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 8.1e-18 94.0 103 56.3
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 8.1e-18 94.0 92 59.8
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.4e-17 93.2 95 57.9
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 5.3e-17 91.3 93 54.8
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 5.3e-17 91.3 94 58.5
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 6.9e-17 90.9 93 60.2
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 9.0e-17 90.5 91 56.0
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 9.0e-17 90.5 101 53.5
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.2e-16 90.1 98 57.1
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 1.5e-16 89.7 105 52.4
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 2.0e-16 89.4 101 57.4
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.4e-16 88.6 100 56.0
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 3.4e-16 88.6 112 54.5
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 3.4e-16 88.6 92 55.4
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.5e-16 88.2 99 56.6
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 7.6e-16 87.4 91 54.9
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 9.9e-16 87.0 99 57.6
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.2e-15 85.9 99 55.6
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 2.2e-15 85.9 102 52.9
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.9e-15 85.5 93 54.8
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.9e-15 85.5 99 56.6
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 3.8e-15 85.1 92 58.7
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 3.8e-15 85.1 94 57.4
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 3.8e-15 85.1 94 56.4
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 4.9e-15 84.7 100 57.0
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 4.9e-15 84.7 94 56.4
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 4.9e-15 84.7 82 61.0
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 6.4e-15 84.3 95 52.6
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 6.4e-15 84.3 93 59.1
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 8.4e-15 84.0 94 54.3
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.9e-14 82.8 99 55.6
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 2.4e-14 82.4 94 53.2
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 2.4e-14 82.4 95 55.8
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 2.4e-14 82.4 100 55.0
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 3.2e-14 82.0 107 48.6
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 3.2e-14 82.0 95 54.7
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.4e-14 81.3 99 53.5
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 7.1e-14 80.9 85 60.0
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 7.1e-14 80.9 94 52.1
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 9.3e-14 80.5 105 52.4
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 9.3e-14 80.5 104 48.1
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.2e-13 80.1 93 52.7
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.6e-13 79.7 93 52.7
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.6e-13 79.7 93 52.7
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.6e-13 79.7 93 52.7
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.1e-13 79.3 101 55.4
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 3.5e-13 78.6 97 50.5
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 3.5e-13 78.6 104 48.1
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 3.5e-13 78.6 87 58.6
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 4.6e-13 78.2 100 50.0
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 4.6e-13 78.2 115 47.8
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 4.6e-13 78.2 106 51.9
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 6.0e-13 77.8 91 53.8
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 7.9e-13 77.4 79 60.8
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.0e-12 77.0 95 56.8
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 1.3e-12 76.6 94 48.9
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 2.3e-12 75.9 95 56.8
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 3.0e-12 75.5 93 54.8
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.1e-12 74.7 92 50.0
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 5.1e-12 74.7 89 50.6
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 6.7e-12 74.3 90 52.2
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 8.7e-12 73.9 96 46.9
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.1e-11 73.6 105 48.6
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 1.9e-11 72.8 104 49.0
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 2.5e-11 72.4 109 48.6
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 2.5e-11 72.4 68 64.7
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 4.3e-11 71.6 110 47.3
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 4.3e-11 71.6 92 46.7
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 4.3e-11 71.6 100 52.0
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 5.6e-11 71.2 102 50.0
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 5.6e-11 71.2 91 49.5
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 7.4e-11 70.9 107 41.1
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 7.4e-11 70.9 72 61.1
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 9.6e-11 70.5 91 47.3
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.3e-10 70.1 88 47.7
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.3e-10 70.1 101 50.5
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 2.1e-10 69.3 104 47.1
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 2.8e-10 68.9 103 48.5
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 3.6e-10 68.6 88 48.9
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 3.6e-10 68.6 105 49.5
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 6.2e-10 67.8 83 54.2
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 6.2e-10 67.8 92 45.7
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 6.2e-10 67.8 92 45.7
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 6.2e-10 67.8 92 45.7
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 6.2e-10 67.8 68 58.8
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 6.2e-10 67.8 119 44.5
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 6.2e-10 67.8 92 50.0
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 6.2e-10 67.8 88 46.6
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.1e-09 67.0 68 57.4
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 1.4e-09 66.6 88 43.2
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 1.4e-09 66.6 88 43.2
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 1.4e-09 66.6 81 49.4
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.8e-09 66.2 88 46.6
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.8e-09 66.2 76 53.9
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 1.8e-09 66.2 116 38.8
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.8e-09 66.2 87 51.7
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 2.4e-09 65.9 90 45.6
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 3.1e-09 65.5 90 44.4
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.1e-09 65.5 82 52.4
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 5.3e-09 64.7 92 46.7
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 5.3e-09 64.7 92 46.7
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 6.9e-09 64.3 94 45.7
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 6.9e-09 64.3 92 43.5
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 6.9e-09 64.3 90 44.4
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 6.9e-09 64.3 103 46.6
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.9e-09 64.3 84 51.2
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 1.2e-08 63.5 112 37.5
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 1.5e-08 63.2 90 42.2
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 2.0e-08 62.8 88 43.2
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 2.0e-08 62.8 88 43.2
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 4.5e-08 61.6 83 43.4
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 7.6e-08 60.8 70 55.7
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 9.9e-08 60.5 53 60.4
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 9.9e-08 60.5 85 44.7
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 9.9e-08 60.5 99 42.4
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 9.9e-08 60.5 96 43.8
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 1.3e-07 60.1 71 53.5
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 1.3e-07 60.1 48 64.6
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 1.3e-07 60.1 73 49.3
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.7e-07 59.7 89 44.9
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 2.2e-07 59.3 88 40.9
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 2.2e-07 59.3 88 40.9
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 2.2e-07 59.3 88 40.9
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 2.2e-07 59.3 41 75.6
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 2.2e-07 59.3 104 39.4
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.2e-07 59.3 100 40.0
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 2.9e-07 58.9 96 46.9
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 3.8e-07 58.5 88 44.3
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 3.8e-07 58.5 90 42.2
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 3.8e-07 58.5 114 36.0
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 3.8e-07 58.5 99 44.4
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 4.9e-07 58.2 98 41.8
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 6.4e-07 57.8 89 44.9
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 6.4e-07 57.8 101 41.6
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 8.4e-07 57.4 96 40.6
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 8.4e-07 57.4 67 52.2
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.1e-06 57.0 97 42.3
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.1e-06 57.0 96 44.8
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 1.4e-06 56.6 94 44.7
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.4e-06 56.6 103 38.8
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.2e-06 55.1 100 38.0
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 4.2e-06 55.1 103 38.8
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 5.5e-06 54.7 93 44.1
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 5.5e-06 54.7 66 53.0
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 5.5e-06 54.7 79 48.1


User provided reference genes

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