Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 8.3e-94 347.1 177 100.0
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 4.6e-36 155.2 138 60.9
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.3e-35 153.7 139 61.9
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 3.0e-35 152.5 139 60.4
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 1.1e-34 150.6 129 62.0
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 1.5e-34 150.2 129 61.2
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 7.3e-34 147.9 137 56.2
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 2.1e-33 146.4 137 55.5
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.1e-33 146.4 137 55.5
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 2.1e-33 146.4 137 56.2
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 3.6e-33 145.6 139 59.7
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.6e-33 145.6 137 55.5
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 8.1e-33 144.4 134 56.0
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 4.0e-32 142.1 138 58.0
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 4.0e-32 142.1 135 52.6
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 1.2e-31 140.6 140 58.6
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.5e-31 140.2 141 53.9
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 2.6e-31 139.4 129 56.6
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.6e-31 139.4 135 54.8
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 9.9e-31 137.5 152 56.6
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 1.1e-29 134.0 141 53.9
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 1.4e-29 133.7 141 56.7
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 1.4e-29 133.7 134 52.2
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 5.4e-29 131.7 171 46.8
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 7.1e-29 131.3 127 52.8
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 9.3e-29 131.0 139 55.4
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.3e-29 131.0 137 52.6
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 1.2e-28 130.6 134 50.7
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 4.6e-28 128.6 132 54.5
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 7.9e-28 127.9 137 51.8
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 7.9e-28 127.9 132 53.0
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 1.0e-27 127.5 140 52.9
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 1.0e-27 127.5 135 49.6
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 1.0e-27 127.5 151 51.0
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 1.0e-27 127.5 151 51.7
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 1.3e-27 127.1 130 53.1
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.3e-27 127.1 144 52.8
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 1.3e-27 127.1 134 52.2
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 1.8e-27 126.7 118 53.4
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 3.0e-27 125.9 133 52.6
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 3.0e-27 125.9 138 47.1
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.9e-27 125.6 140 54.3
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 5.1e-27 125.2 145 52.4
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 8.7e-27 124.4 151 49.7
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 1.1e-26 124.0 129 47.3
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 1.5e-26 123.6 139 51.8
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 2.5e-26 122.9 145 51.7
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.3e-26 122.1 140 53.6
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.3e-26 122.1 137 49.6
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 4.3e-26 122.1 141 51.1
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 7.4e-26 121.3 127 48.8
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 7.4e-26 121.3 127 50.4
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 9.6e-26 120.9 132 51.5
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.6e-25 120.2 142 50.7
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 2.1e-25 119.8 151 45.0
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 2.8e-25 119.4 135 51.1
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 4.8e-25 118.6 142 50.7
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 6.2e-25 118.2 142 50.7
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 6.2e-25 118.2 123 48.0
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 1.1e-24 117.5 119 52.1
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 4.0e-24 115.5 132 47.7
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 5.3e-24 115.2 140 50.0
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 6.9e-24 114.8 134 45.5
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.2e-23 114.0 125 51.2
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 1.2e-23 114.0 164 43.9
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 5.8e-23 111.7 134 50.0
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 7.6e-23 111.3 122 51.6
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 7.6e-23 111.3 157 42.7
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 2.9e-22 109.4 131 44.3
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.9e-22 109.4 140 47.9
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 2.9e-22 109.4 134 42.5
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 3.8e-22 109.0 123 46.3
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 4.9e-22 108.6 135 45.9
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 6.5e-22 108.2 131 48.1
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 8.4e-22 107.8 136 44.1
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 1.9e-21 106.7 115 53.9
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.9e-21 106.7 105 55.2
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.2e-21 105.9 112 52.7
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 4.2e-21 105.5 131 46.6
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 7.1e-21 104.8 140 45.7
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 9.3e-21 104.4 128 43.0
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 9.3e-21 104.4 139 46.0
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 9.3e-21 104.4 134 45.5
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 1.2e-20 104.0 171 39.2
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 3.5e-20 102.4 143 46.2
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 1.8e-19 100.1 106 50.9
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 1.8e-19 100.1 106 50.9
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 2.3e-19 99.8 134 42.5
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 3.0e-19 99.4 135 44.4
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 8.7e-19 97.8 106 51.9
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 8.7e-19 97.8 143 46.9
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 1.1e-18 97.4 120 50.8
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 4.3e-18 95.5 103 52.4
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 5.7e-18 95.1 118 50.0
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 7.4e-18 94.7 106 49.1
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 1.3e-17 94.0 106 48.1
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 1.3e-17 94.0 106 49.1
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.8e-17 92.8 118 49.2
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 3.7e-17 92.4 107 49.5
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 3.7e-17 92.4 107 49.5
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 3.7e-17 92.4 119 43.7
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 4.8e-17 92.0 107 48.6
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 4.8e-17 92.0 132 39.4
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 6.2e-17 91.7 133 41.4
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 6.2e-17 91.7 139 41.0
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 1.4e-16 90.5 107 47.7
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 2.4e-16 89.7 113 46.0
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 2.4e-16 89.7 113 46.0
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 2.4e-16 89.7 109 45.9
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 2.4e-16 89.7 111 50.5
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 2.4e-16 89.7 131 40.5
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 6.9e-16 88.2 131 39.7
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 9.0e-16 87.8 106 46.2
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.2e-15 87.4 106 50.9
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 1.5e-15 87.0 126 46.0
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 3.4e-15 85.9 123 47.2
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 7.6e-15 84.7 139 40.3
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 1.7e-14 83.6 107 45.8
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 2.2e-14 83.2 129 38.8
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 2.2e-14 83.2 117 48.7
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 5.0e-14 82.0 144 38.9
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 5.0e-14 82.0 144 38.9
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 6.5e-14 81.6 137 36.5
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 1.2e-12 77.4 145 34.5
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 1.2e-12 77.4 144 38.9
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 2.7e-12 76.3 127 37.0
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 3.5e-12 75.9 128 39.8
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 7.9e-12 74.7 132 40.9
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 7.9e-12 74.7 149 35.6
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 1.3e-11 73.9 150 36.7
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 2.3e-11 73.2 133 33.8
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.3e-11 73.2 142 35.9
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 3.9e-11 72.4 149 36.2
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 1.9e-10 70.1 114 41.2
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 3.3e-10 69.3 138 37.7
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 5.7e-10 68.6 152 34.2
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 1.3e-09 67.4 139 31.7
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 1.6e-09 67.0 137 37.2
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 2.2e-09 66.6 137 37.2
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 2.2e-09 66.6 132 36.4
BcaC04g19726 Brassica carinata HOM05D010860 ORTHO05D005733 8.2e-09 64.7 137 36.5
unitig_21.g20302 Utricularia gibba HOM05D005728 ORTHO05D005733 4.1e-08 62.4 108 37.0
C03p12750 Brassica napus HOM05D010860 ORTHO05D005733 3.4e-07 59.3 114 38.6
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 1.7e-06 57.0 110 35.5
BolC3t13741H Brassica oleracea HOM05D010860 ORTHO05D005733 2.2e-06 56.6 116 38.8
Oeu001270.1 Olea europaea HOM05D005728 ORTHO05D005733 3.8e-06 55.8 135 32.6


User provided reference genes

Program Settings