Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0450 Trochodendron aralioides HOM05D006363 ORTHO05D007920 2.2e-51 205.3 99 100.0
TAR291G0005 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.4e-50 202.6 99 99.0
TAR375G0495 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.4e-50 202.6 99 99.0
TAR624G1193 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.4e-50 202.6 99 99.0
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 2.7e-49 198.4 98 96.9
TAR633G0106 Trochodendron aralioides HOM05D006363 ORTHO05D007920 2.3e-45 185.3 99 92.9
TAR633G1276 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.2e-44 183.0 99 90.9
TAR614G0003 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.4e-42 176.0 99 89.9
TAR375G0304 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.5e-20 102.8 71 74.6
Nn6g34197 Nelumbo nucifera HOM05D006363 ORTHO05D007920 5.8e-20 100.9 70 72.9
HanXRQChr14g0462221 Helianthus annuus HOM05D006363 ORTHO05D007920 8.3e-19 97.1 71 66.2
Dinv28459 Davidia involucrata HOM05D006363 ORTHO05D007920 1.9e-18 95.9 74 63.5
CSS0002932 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 2.4e-18 95.5 70 68.6
CSS0028509 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 2.4e-18 95.5 70 68.6
ECA238G0548 Erigeron canadensis HOM05D006363 ORTHO05D007920 5.4e-18 94.4 71 64.8
PSO782G5704 Papaver somniferum HOM05D006363 ORTHO05D007920 7.0e-18 94.0 71 64.8
MBI04_g04731_MAGBIO Magnolia biondii HOM05D006363 ORTHO05D007920 9.2e-18 93.6 71 64.8
Lsat_1_v5_gn_2_133820 Lactuca sativa HOM05D006363 ORTHO05D007920 1.2e-17 93.2 84 57.1
Aqoxy7G00395 Aquilegia oxysepala HOM05D006363 ORTHO05D007920 1.6e-17 92.8 71 62.0
PSO478G1739 Papaver somniferum HOM05D006363 ORTHO05D007920 1.6e-17 92.8 71 63.4
MSTRG.8448 Avicennia marina HOM05D006363 ORTHO05D007920 2.7e-17 92.0 71 64.8
vmacro09843 Vaccinium macrocarpon HOM05D006363 ORTHO05D007920 1.0e-16 90.1 70 65.7
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 1.3e-16 89.7 70 62.9
AUR62021214 Chenopodium quinoa HOM05D006363 ORTHO05D007920 1.7e-16 89.4 70 64.3
AUR62016007 Chenopodium quinoa HOM05D006363 ORTHO05D007920 2.3e-16 89.0 70 62.9
Lj8C25T12 Lonicera japonica HOM05D006363 ORTHO05D007920 2.3e-16 89.0 70 61.4
Nitab4.5_0001508g0030 Nicotiana tabacum HOM05D006363 ORTHO05D007920 2.3e-16 89.0 70 62.9
Rhsim09G0197500 Rhododendron simsii HOM05D006363 ORTHO05D007920 2.3e-16 89.0 92 53.3
GSVIVG01010552001 Vitis vinifera HOM05D006363 ORTHO05D007920 3.0e-16 88.6 72 65.3
Migut.F01133 Erythranthe guttata HOM05D006363 ORTHO05D007920 3.9e-16 88.2 70 58.6
AL8G26570 Arabidopsis lyrata HOM05D006363 ORTHO05D007920 5.0e-16 87.8 89 55.1
Carub.0008s1228 Capsella rubella HOM05D006363 ORTHO05D007920 6.6e-16 87.4 74 63.5
Gohir.D12G260100 Gossypium hirsutum HOM05D006363 ORTHO05D007920 6.6e-16 87.4 93 52.7
Gorai.008G278600 Gossypium raimondii HOM05D006363 ORTHO05D007920 6.6e-16 87.4 93 52.7
PGR042G3170 Punica granatum HOM05D006363 ORTHO05D007920 6.6e-16 87.4 71 63.4
Oeu062762.2 Olea europaea HOM05D006363 ORTHO05D007920 1.1e-15 86.7 70 61.4
BraA03t10870Z Brassica rapa HOM05D006363 ORTHO05D007920 1.5e-15 86.3 90 53.3
CARHR265110 Cardamine hirsuta HOM05D006363 ORTHO05D007920 1.5e-15 86.3 74 62.2
Thhalv10015742m.g Eutrema salsugineum HOM05D006363 ORTHO05D007920 1.5e-15 86.3 74 62.2
Gohir.A12G258900 Gossypium hirsutum HOM05D006363 ORTHO05D007920 1.5e-15 86.3 93 51.6
BcaC01g06171 Brassica carinata HOM05D006363 ORTHO05D007920 1.9e-15 85.9 90 53.3
Cpa.g.sc107.33 Carica papaya HOM05D006363 ORTHO05D007920 1.9e-15 85.9 92 53.3
Nitab4.5_0000716g0210 Nicotiana tabacum HOM05D006363 ORTHO05D007920 1.9e-15 85.9 70 61.4
Sp6g14440 Schrenkiella parvula HOM05D006363 ORTHO05D007920 2.5e-15 85.5 91 53.8
THA.LOC104811988 Tarenaya hassleriana HOM05D006363 ORTHO05D007920 2.5e-15 85.5 89 55.1
EL10Ac3g05667 Beta vulgaris HOM05D006363 ORTHO05D007920 3.3e-15 85.1 70 61.4
C03p18470 Brassica napus HOM05D006363 ORTHO05D007920 3.3e-15 85.1 90 52.2
Peaxi162Scf00915g00018 Petunia axillaris HOM05D006363 ORTHO05D007920 5.6e-15 84.3 70 58.6
BolC3t14244H Brassica oleracea HOM05D006363 ORTHO05D007920 9.5e-15 83.6 90 51.1
Atru.chr1.482 Acer truncatum HOM05D006363 ORTHO05D007920 1.6e-14 82.8 93 53.8
BcaB01g04190 Brassica carinata HOM05D006363 ORTHO05D007920 2.1e-14 82.4 90 52.2
QL09p014582 Quercus lobata HOM05D006363 ORTHO05D007920 2.1e-14 82.4 74 59.5
Thecc.03G174500 Theobroma cacao HOM05D006363 ORTHO05D007920 2.1e-14 82.4 96 50.0
A03p15800 Brassica napus HOM05D006363 ORTHO05D007920 2.8e-14 82.0 90 51.1
Psat6g200600 Pisum sativum HOM05D006363 ORTHO05D007920 2.8e-14 82.0 70 60.0
Sed0019375 Sechium edule HOM05D006363 ORTHO05D007920 2.8e-14 82.0 74 56.8
MD07G1266800 Malus domestica HOM05D006363 ORTHO05D007920 3.6e-14 81.6 70 60.0
CDE04G1845 Ceratophyllum demersum HOM05D006363 ORTHO05D007920 4.7e-14 81.3 71 60.6
Ca_10782_v3 Cicer arietinum L. HOM05D006363 ORTHO05D007920 4.7e-14 81.3 71 57.7
Aa31LG3G8570 Aethionema arabicum HOM05D006363 ORTHO05D007920 6.2e-14 80.9 74 58.1
AT5G52190 Arabidopsis thaliana HOM05D006363 ORTHO05D007920 6.2e-14 80.9 89 51.7
Cc03_g13850 Coffea canephora HOM05D006363 ORTHO05D007920 8.1e-14 80.5 61 65.6
COL.COLO4_14288 Corchorus olitorius HOM05D006363 ORTHO05D007920 8.1e-14 80.5 69 59.4
Medtr1g100753 Medicago truncatula HOM05D006363 ORTHO05D007920 8.1e-14 80.5 70 58.6
Sabra15G0151200 Salix brachista HOM05D006363 ORTHO05D007920 8.1e-14 80.5 74 56.8
Duzib205G1779 Durio zibethinus HOM05D006363 ORTHO05D007920 1.1e-13 80.1 96 49.0
MD01G1199000 Malus domestica HOM05D006363 ORTHO05D007920 1.1e-13 80.1 70 58.6
TWI39G0139 Tripterygium wilfordii HOM05D006363 ORTHO05D007920 1.1e-13 80.1 74 55.4
Potri.015G140600 Populus trichocarpa HOM05D006363 ORTHO05D007920 1.4e-13 79.7 74 55.4
Ciclev10007013m.g Citrus clementina HOM05D006363 ORTHO05D007920 1.8e-13 79.3 70 58.6
Haze_13734 Corylus avellana HOM05D006363 ORTHO05D007920 1.8e-13 79.3 74 56.8
Glyma.10G237500 Glycine max HOM05D006363 ORTHO05D007920 1.8e-13 79.3 71 57.7
Glyma.20G157100 Glycine max HOM05D006363 ORTHO05D007920 1.8e-13 79.3 71 57.7
unitig_60.g25545 Utricularia gibba HOM05D006363 ORTHO05D007920 1.8e-13 79.3 66 62.1
Cfa008303 Carpinus fangiana HOM05D006363 ORTHO05D007920 2.3e-13 79.0 74 55.4
MELO3C006895.2 Cucumis melo HOM05D006363 ORTHO05D007920 2.3e-13 79.0 74 56.8
Eucgr.A02801 Eucalyptus grandis HOM05D006363 ORTHO05D007920 2.3e-13 79.0 71 57.7
FAN01G1422 Fragaria x ananassa HOM05D006363 ORTHO05D007920 2.3e-13 79.0 70 57.1
FAN10G0438 Fragaria x ananassa HOM05D006363 ORTHO05D007920 2.3e-13 79.0 70 57.1
FvH4_7g29240 Fragaria vesca HOM05D006363 ORTHO05D007920 3.1e-13 78.6 70 57.1
FAN06G3284 Fragaria x ananassa HOM05D006363 ORTHO05D007920 3.1e-13 78.6 70 57.1
FAN06G3928 Fragaria x ananassa HOM05D006363 ORTHO05D007920 3.1e-13 78.6 70 57.1
LjContig00238g0019616 Lotus japonicus HOM05D006363 ORTHO05D007920 3.1e-13 78.6 71 56.3
Manes.07G111200 Manihot esculenta HOM05D006363 ORTHO05D007920 3.1e-13 78.6 74 55.4
PGSC0003DMG400014325 Solanum tuberosum HOM05D006363 ORTHO05D007920 3.1e-13 78.6 71 56.3
BcaC06g36545 Brassica carinata HOM05D006363 ORTHO05D007920 4.0e-13 78.2 74 56.8
Sc25g0000440 Simmondsia chinensis HOM05D006363 ORTHO05D007920 4.0e-13 78.2 70 58.6
Solyc03g025990.1 Solanum lycopersicum HOM05D006363 ORTHO05D007920 4.0e-13 78.2 70 57.1
FAN03G1027 Fragaria x ananassa HOM05D006363 ORTHO05D007920 5.2e-13 77.8 70 55.7
FAN03G1282 Fragaria x ananassa HOM05D006363 ORTHO05D007920 5.2e-13 77.8 70 55.7
Prupe.2G292400 Prunus persica HOM05D006363 ORTHO05D007920 5.2e-13 77.8 70 57.1
Sopen03g004810 Solanum pennellii HOM05D006363 ORTHO05D007920 5.2e-13 77.8 70 57.1
CiPaw.03G104700 Carya illinoinensis HOM05D006363 ORTHO05D007920 6.8e-13 77.4 93 48.4
TPR.G14326 Trifolium pratense HOM05D006363 ORTHO05D007920 6.8e-13 77.4 70 55.7
SalBow2G2214 Salvia bowleyana HOM05D006363 ORTHO05D007920 1.5e-12 76.3 60 61.7
Lalb_Chr02g0140961 Lupinus albus HOM05D006363 ORTHO05D007920 2.0e-12 75.9 93 44.1
RcHm_v2.0_Chr1g0376991 Rosa chinensis HOM05D006363 ORTHO05D007920 2.0e-12 75.9 70 55.7
CsaV3_3G016980 Cucumis sativus L. HOM05D006363 ORTHO05D007920 2.6e-12 75.5 74 54.1
Phvul.007G068100 Phaseolus vulgaris HOM05D006363 ORTHO05D007920 2.6e-12 75.5 69 55.1
A08p37210 Brassica napus HOM05D006363 ORTHO05D007920 5.8e-12 74.3 90 51.1
VMungo0720G1872 Vigna mungo HOM05D006363 ORTHO05D007920 9.9e-12 73.6 69 53.6
CANSAT21G0627 Cannabis sativa HOM05D006363 ORTHO05D007920 1.7e-11 72.8 71 52.1
Os04g0568600 Oryza sativa ssp. japonica HOM05D006363 ORTHO05D007920 3.7e-11 71.6 61 59.0
CANSAT21G2254 Cannabis sativa HOM05D006363 ORTHO05D007920 8.3e-11 70.5 71 50.7
CAN.G947.11 Capsicum annuum HOM05D006363 ORTHO05D007920 1.1e-10 70.1 61 57.4
HPP92_021110 Vanilla planifolia HOM05D006363 ORTHO05D007920 1.9e-10 69.3 66 57.6
Zm00001eb428810 Zea mays HOM05D006363 ORTHO05D007920 4.1e-10 68.2 57 61.4
DCAR_018188 Daucus carota HOM05D006363 ORTHO05D007920 2.1e-09 65.9 72 47.2
ATR0757G111 Amborella trichopoda HOM05D006363 ORTHO05D007920 6.0e-09 64.3 61 49.2
SEGI_31787 Sequoiadendron giganteum HOM05D006363 ORTHO05D007920 6.0e-09 64.3 71 52.1
BcaC05g27871 Brassica carinata HOM05D006363 ORTHO05D007920 3.6e-06 55.1 33 75.8
BolC5t32613H Brassica oleracea HOM05D006363 ORTHO05D007920 3.6e-06 55.1 33 75.8


User provided reference genes

Program Settings