Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.4e-117 425.6 231 100.0
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 3.8e-91 338.6 195 95.9
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.5e-90 336.7 231 84.0
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 3.2e-90 335.5 231 82.3
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 9.1e-85 317.4 235 73.2
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 2.7e-84 315.8 231 78.8
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 2.6e-79 299.3 231 75.3
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 2.8e-78 295.8 235 75.3
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.4e-77 293.5 242 66.9
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 1.8e-77 293.1 232 75.0
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.4e-77 292.7 236 67.8
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 9.2e-77 290.8 231 71.4
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.2e-76 290.4 231 71.0
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 1.6e-76 290.0 239 72.0
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 3.5e-76 288.9 235 73.6
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 3.5e-76 288.9 233 73.0
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 3.5e-76 288.9 231 73.2
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 4.5e-76 288.5 233 72.1
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 1.3e-75 287.0 238 72.7
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 2.9e-75 285.8 232 70.7
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 6.6e-75 284.6 242 70.2
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 8.6e-75 284.3 232 67.7
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.1e-74 283.9 235 71.5
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 1.5e-74 283.5 229 70.7
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 1.9e-74 283.1 255 70.2
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 1.9e-74 283.1 232 73.3
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 5.6e-74 281.6 237 71.3
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 5.6e-74 281.6 231 71.9
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 9.5e-74 280.8 235 68.9
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.2e-73 280.4 242 69.8
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 1.6e-73 280.0 234 72.2
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 1.6e-73 280.0 234 72.2
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 3.6e-73 278.9 231 71.0
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 4.7e-73 278.5 235 68.5
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 4.7e-73 278.5 230 70.9
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 8.0e-73 277.7 236 70.3
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 1.0e-72 277.3 244 70.9
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 1.8e-72 276.6 233 69.5
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 1.8e-72 276.6 241 64.7
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 4.0e-72 275.4 246 69.1
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 5.2e-72 275.0 234 67.1
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 5.2e-72 275.0 230 70.4
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 2.0e-71 273.1 236 69.9
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 2.0e-71 273.1 240 63.3
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 2.6e-71 272.7 237 67.1
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 2.6e-71 272.7 230 69.6
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 2.6e-71 272.7 237 69.2
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 7.5e-71 271.2 220 75.0
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 9.8e-71 270.8 227 70.9
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 1.3e-70 270.4 190 80.5
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 1.3e-70 270.4 241 64.3
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 6.4e-70 268.1 246 64.2
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 1.9e-69 266.5 227 64.8
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 5.4e-69 265.0 181 80.7
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 7.0e-69 264.6 263 62.0
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 9.2e-69 264.2 240 65.8
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 9.2e-69 264.2 240 66.7
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 9.2e-69 264.2 240 66.7
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 1.6e-68 263.5 231 68.8
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 2.0e-68 263.1 182 80.2
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 4.6e-68 261.9 240 65.4
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 6.0e-68 261.5 240 65.4
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 1.3e-67 260.4 188 77.7
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 1.7e-67 260.0 272 57.4
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 8.6e-67 257.7 235 66.4
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.1e-66 257.3 171 86.0
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 1.5e-66 256.9 215 70.2
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 1.9e-66 256.5 231 66.2
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 2.5e-66 256.1 237 62.0
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 3.3e-66 255.8 233 63.9
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 3.3e-66 255.8 214 69.2
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 4.3e-66 255.4 235 66.0
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 4.3e-66 255.4 239 64.0
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 4.3e-66 255.4 228 68.0
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 4.3e-66 255.4 237 65.8
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 5.6e-66 255.0 189 79.4
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 7.3e-66 254.6 244 66.4
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 1.2e-65 253.8 189 78.3
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 2.8e-65 252.7 183 73.2
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 3.6e-65 252.3 238 64.3
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 8.0e-65 251.1 238 61.3
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 1.1e-64 250.8 187 72.7
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 1.4e-64 250.4 235 65.5
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 1.8e-64 250.0 238 66.0
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 2.3e-64 249.6 250 58.4
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 2.3e-64 249.6 212 65.1
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 8.9e-64 247.7 242 63.2
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 2.0e-63 246.5 249 63.1
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 5.8e-63 245.0 238 60.9
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 7.5e-63 244.6 183 71.0
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.3e-62 243.8 187 75.9
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.3e-62 243.8 187 75.9
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 1.1e-61 240.7 242 62.0
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 7.0e-61 238.0 187 75.9
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 7.0e-61 238.0 182 73.6
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 2.7e-60 236.1 192 68.2
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 7.8e-60 234.6 193 65.3
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 7.3e-58 228.0 198 64.1
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 2.0e-55 219.9 154 83.1
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 2.6e-55 219.5 200 64.5
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.3e-54 217.2 183 67.8
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.3e-54 217.2 304 48.4
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 3.9e-51 205.7 203 59.1
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 8.6e-51 204.5 168 67.9
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.2e-49 200.7 136 78.7
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 3.1e-48 196.1 229 50.7
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 2.9e-46 189.5 199 53.8
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 5.1e-43 178.7 124 84.7
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 1.4e-40 170.6 261 49.4
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 5.8e-39 165.2 148 62.2
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 7.6e-39 164.9 173 54.3
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 7.6e-39 164.9 144 62.5
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 2.1e-36 156.8 185 52.4
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.7e-35 153.7 101 79.2
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.9e-35 152.5 101 79.2
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.9e-34 150.2 101 77.2
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.8e-32 143.7 94 77.7
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.1e-29 134.4 213 44.6
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 8.7e-27 124.8 95 68.4
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.3e-26 122.5 73 83.6
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 5.6e-26 122.1 161 44.7
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 6.2e-25 118.6 97 75.3
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 8.1e-25 118.2 213 40.8
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 3.1e-24 116.3 136 48.5
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 1.2e-23 114.4 96 59.4
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 2.6e-23 113.2 193 40.9
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 9.9e-23 111.3 153 46.4
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 1.3e-22 110.9 79 67.1
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.7e-22 110.5 255 34.5
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 2.5e-21 106.7 191 39.8
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 4.2e-21 105.9 191 39.3
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.5e-18 97.4 185 38.9
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.8e-17 93.2 82 64.6
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 1.5e-15 87.4 145 35.9
TAR636G0451 Trochodendron aralioides HOM05D005346 ORTHO05D007051 4.5e-15 85.9 89 53.9
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.3e-11 73.6 93 50.5
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 9.7e-10 68.2 115 40.9
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 9.7e-10 68.2 238 30.3
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.3e-09 67.8 133 36.1
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 8.2e-09 65.1 51 66.7
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 1.2e-07 61.2 53 81.1
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 2.6e-07 60.1 127 36.2


User provided reference genes

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