Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0321 Trochodendron aralioides HOM05D003448 ORTHO05D004028 8.6e-54 213.4 107 100.0
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 8.1e-28 127.1 95 67.4
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 3.4e-26 121.7 110 59.1
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 9.9e-26 120.2 111 56.8
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 1.9e-24 115.9 107 57.9
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 1.6e-23 112.8 110 54.5
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 4.6e-23 111.3 111 56.8
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 4.6e-23 111.3 110 54.5
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 1.0e-22 110.2 107 54.2
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 1.3e-22 109.8 115 48.7
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 2.3e-22 109.0 113 48.7
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 3.0e-22 108.6 107 57.9
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 5.1e-22 107.8 107 51.4
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 5.1e-22 107.8 108 55.6
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 6.7e-22 107.5 107 52.3
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 1.5e-21 106.3 110 50.0
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 1.9e-21 105.9 107 51.4
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 3.3e-21 105.1 107 56.1
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 3.3e-21 105.1 109 56.0
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 4.3e-21 104.8 109 53.2
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 5.6e-21 104.4 111 53.2
ECA246G1613 Erigeron canadensis HOM05D003448 ORTHO05D004028 5.6e-21 104.4 106 52.8
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 5.6e-21 104.4 110 51.8
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 9.6e-21 103.6 107 49.5
Haze_11952 Corylus avellana HOM05D003448 ORTHO05D004028 1.6e-20 102.8 106 55.7
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 1.6e-20 102.8 110 49.1
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 1.6e-20 102.8 110 49.1
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 2.8e-20 102.1 110 50.9
AUR62005855 Chenopodium quinoa HOM05D003448 ORTHO05D004028 3.7e-20 101.7 107 50.5
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 4.8e-20 101.3 107 54.2
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 1.1e-19 100.1 108 50.0
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 1.4e-19 99.8 113 48.7
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 1.4e-19 99.8 110 50.9
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 1.4e-19 99.8 109 47.7
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 1.4e-19 99.8 109 48.6
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 2.4e-19 99.0 106 50.0
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.4e-19 99.0 107 47.7
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 2.4e-19 99.0 107 47.7
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 2.4e-19 99.0 111 49.5
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 3.1e-19 98.6 106 50.0
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 3.1e-19 98.6 106 50.0
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 3.1e-19 98.6 110 51.8
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 3.1e-19 98.6 110 54.5
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 5.3e-19 97.8 108 50.9
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 6.9e-19 97.4 101 51.5
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 9.0e-19 97.1 107 48.6
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 9.0e-19 97.1 105 49.5
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 9.0e-19 97.1 108 48.1
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 1.5e-18 96.3 110 50.0
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 1.5e-18 96.3 110 50.0
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 2.6e-18 95.5 110 49.1
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 3.4e-18 95.1 110 48.2
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 4.5e-18 94.7 102 48.0
AT2G03330 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 4.5e-18 94.7 110 47.3
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 4.5e-18 94.7 113 50.4
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 4.5e-18 94.7 106 52.8
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 4.5e-18 94.7 107 50.5
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 4.5e-18 94.7 107 50.5
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 5.8e-18 94.4 107 46.7
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 7.6e-18 94.0 107 46.7
Gohir.A03G102650 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.3e-17 93.2 100 49.0
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 1.7e-17 92.8 106 45.3
FAN12G3596 Fragaria x ananassa HOM05D003448 ORTHO05D004028 2.2e-17 92.4 100 51.0
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 2.2e-17 92.4 111 45.9
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 2.9e-17 92.0 107 45.8
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 3.8e-17 91.7 107 45.8
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 3.8e-17 91.7 103 50.5
FAN07G2405 Fragaria x ananassa HOM05D003448 ORTHO05D004028 8.4e-17 90.5 108 50.9
FAN22G1572 Fragaria x ananassa HOM05D003448 ORTHO05D004028 8.4e-17 90.5 108 51.9
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 8.4e-17 90.5 110 47.3
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 8.4e-17 90.5 108 48.1
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 1.1e-16 90.1 106 44.3
C02p51340 Brassica napus HOM05D003448 ORTHO05D004028 1.1e-16 90.1 106 44.3
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 1.4e-16 89.7 107 45.8
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 1.9e-16 89.4 102 47.1
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 2.4e-16 89.0 106 43.4
C02p51370 Brassica napus HOM05D003448 ORTHO05D004028 2.4e-16 89.0 106 43.4
FAN17G1640 Fragaria x ananassa HOM05D003448 ORTHO05D004028 3.2e-16 88.6 108 50.9
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 2.1e-15 85.9 106 47.2
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 2.1e-15 85.9 106 47.2
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 4.6e-15 84.7 109 44.0
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 4.6e-15 84.7 110 46.4
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 6.0e-15 84.3 68 63.2
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 2.3e-14 82.4 108 45.4
COL.COLO4_27958 Corchorus olitorius HOM05D003448 ORTHO05D004028 3.0e-14 82.0 100 46.0
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 3.0e-14 82.0 104 39.4
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 3.0e-14 82.0 112 45.5
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 8.7e-14 80.5 104 47.1
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 8.7e-14 80.5 108 43.5
SalBow1G1885 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.5e-13 79.7 108 43.5
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.5e-13 79.7 108 43.5
Hma1.2p1_0261F.1_g104800 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 1.9e-13 79.3 58 65.5
Os12g0257500 Oryza sativa ssp. japonica HOM05D003448 ORTHO05D004028 2.5e-13 79.0 108 42.6
Zm00001eb408540 Zea mays HOM05D003448 ORTHO05D004028 7.4e-13 77.4 107 38.3
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 9.6e-13 77.0 106 42.5
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 1.6e-12 76.3 104 45.2
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 2.1e-12 75.9 110 41.8
SalBow8G2290 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.4e-11 73.2 104 42.3
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 1.8e-11 72.8 98 43.9
Peaxi162Scf00187g00126 Petunia axillaris HOM05D003448 ORTHO05D004028 2.4e-11 72.4 42 76.2
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 6.9e-11 70.9 108 40.7
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 6.9e-11 70.9 107 39.3
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 1.2e-10 70.1 111 43.2
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.5e-10 69.7 108 38.9
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 1.5e-10 69.7 104 42.3
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 5.8e-10 67.8 109 40.4
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 5.8e-10 67.8 107 37.4
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 7.6e-10 67.4 109 36.7
HanXRQChr12g0361791 Helianthus annuus HOM05D003448 ORTHO05D004028 7.6e-10 67.4 107 41.1
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 2.9e-09 65.5 107 35.5
ECA233G3599 Erigeron canadensis HOM05D003448 ORTHO05D004028 3.8e-09 65.1 98 41.8
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 4.9e-09 64.7 104 38.5
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 4.9e-09 64.7 116 41.4
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 7.1e-08 60.8 103 35.9
TAR371G0373 Trochodendron aralioides HOM05D003448 ORTHO05D004028 4.6e-07 58.2 54 55.6
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 6.0e-07 57.8 108 37.0
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 7.9e-07 57.4 100 40.0
Nitab4.5_0005448g0040 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.0e-06 57.0 39 69.2
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.3e-06 56.6 108 36.1
Cc00_g19080 Coffea canephora HOM05D004170 ORTHO05D005976 2.3e-06 55.8 36 69.4
HanXRQChr12g0361861 Helianthus annuus HOM05D003448 ORTHO05D004028 3.0e-06 55.5 97 38.1
Nitab4.5_0000391g0100 Nicotiana tabacum HOM05D003448 ORTHO05D004028 5.1e-06 54.7 100 39.0
Nitab4.5_0004471g0060 Nicotiana tabacum HOM05D003448 ORTHO05D004028 8.7e-06 53.9 99 40.4
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 8.7e-06 53.9 111 35.1


User provided reference genes

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