Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.0e-252 876.3 473 100.0
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.4e-193 679.9 477 77.6
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 5.5e-177 624.8 471 70.9
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 2.7e-168 595.9 472 68.0
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 1.2e-163 580.5 478 66.7
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 1.0e-162 577.4 478 66.9
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 5.2e-159 565.1 474 67.3
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 2.0e-158 563.1 504 63.5
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 1.0e-154 550.8 477 63.3
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 1.0e-154 550.8 477 63.3
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 4.0e-151 538.9 479 62.6
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 5.2e-151 538.5 483 63.1
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 2.8e-149 532.7 482 62.7
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 1.4e-148 530.4 485 61.9
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 1.4e-148 530.4 476 62.6
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 4.1e-148 528.9 479 61.4
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 9.1e-148 527.7 485 62.1
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 1.6e-147 526.9 486 61.5
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 1.7e-146 523.5 497 60.8
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 1.7e-146 523.5 479 60.5
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 2.2e-146 523.1 489 60.9
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 2.5e-145 519.6 472 60.4
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 7.2e-145 518.1 481 60.5
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 2.0e-142 510.0 476 59.9
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 1.7e-141 506.9 477 58.5
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 2.8e-141 506.1 515 55.9
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 2.8e-141 506.1 476 59.9
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 2.8e-141 506.1 487 60.0
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 3.7e-141 505.8 486 60.5
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 6.3e-141 505.0 476 59.5
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 1.4e-140 503.8 490 57.6
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 1.8e-140 503.4 496 57.9
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 2.4e-140 503.1 492 58.7
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 3.1e-140 502.7 488 59.4
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 3.1e-140 502.7 479 59.7
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 9.1e-140 501.1 473 58.8
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 1.2e-139 500.7 480 59.4
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 2.0e-139 500.0 481 59.3
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 3.5e-139 499.2 482 57.9
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 5.9e-139 498.4 489 58.5
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 1.0e-138 497.7 480 57.7
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 8.6e-138 494.6 484 59.1
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 8.6e-138 494.6 489 57.7
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 1.5e-137 493.8 485 56.9
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 1.5e-137 493.8 477 58.1
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 7.2e-137 491.5 481 56.1
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 9.5e-137 491.1 503 55.5
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 1.2e-136 490.7 483 59.2
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 2.1e-136 490.0 484 59.1
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 2.1e-136 490.0 483 58.4
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 6.1e-136 488.4 477 59.7
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 6.1e-136 488.4 476 57.6
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 6.1e-136 488.4 477 57.4
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 8.0e-136 488.0 480 57.1
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 1.4e-135 487.3 472 59.5
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 3.0e-135 486.1 482 56.8
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 4.0e-135 485.7 491 56.2
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 6.8e-135 485.0 482 56.6
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 2.0e-134 483.4 472 58.7
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 2.0e-134 483.4 483 57.1
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 2.6e-134 483.0 480 56.5
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 3.4e-134 482.6 475 57.5
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 4.4e-134 482.3 474 59.3
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 5.7e-134 481.9 488 55.1
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 7.5e-134 481.5 485 56.9
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 1.3e-133 480.7 485 56.3
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 2.2e-133 479.9 480 57.5
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 2.2e-133 479.9 484 55.8
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.8e-133 479.6 492 57.9
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 4.9e-133 478.8 474 58.9
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 8.3e-133 478.0 487 57.7
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 1.4e-132 477.2 454 57.3
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.8e-132 476.9 499 56.7
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 3.1e-132 476.1 483 56.9
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 5.4e-132 475.3 481 56.8
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 5.4e-132 475.3 484 58.1
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 7.0e-132 474.9 478 55.2
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 9.2e-132 474.6 501 55.1
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 1.7e-130 470.3 493 56.0
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 2.9e-130 469.5 486 54.5
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 2.5e-129 466.5 487 53.8
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 2.5e-129 466.5 479 56.8
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 3.3e-129 466.1 478 55.9
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 1.6e-128 463.8 377 63.9
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 2.8e-128 463.0 475 56.4
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 4.7e-128 462.2 482 54.6
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 8.0e-128 461.5 513 53.0
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 1.4e-127 460.7 480 56.7
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 2.3e-127 459.9 479 54.9
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 5.8e-126 455.3 476 57.8
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 7.5e-126 454.9 428 60.5
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 2.9e-125 453.0 478 55.6
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 1.6e-123 447.2 436 61.2
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 1.5e-121 440.7 401 61.3
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 8.0e-120 434.9 511 54.2
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 6.8e-119 431.8 484 54.5
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 8.9e-119 431.4 479 52.8
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 2.0e-118 430.3 493 50.7
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 1.2e-115 421.0 472 52.1
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 2.3e-111 406.8 499 52.9
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 7.1e-108 395.2 414 56.8
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 1.9e-105 387.1 419 56.3
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.8e-104 383.3 414 55.6
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 1.9e-92 344.0 341 56.9
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 3.4e-86 323.2 424 48.3
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 1.9e-84 317.4 481 44.5
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 9.3e-84 315.1 392 49.2
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 8.7e-82 308.5 310 57.7
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 5.3e-79 299.3 473 43.1
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 1.9e-76 290.8 479 41.1
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 2.1e-75 287.3 186 79.6
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 3.3e-65 253.4 310 51.0
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 9.7e-65 251.9 323 48.9
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 1.7e-61 241.1 221 58.8
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 2.2e-61 240.7 238 56.3
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 2.1e-59 234.2 430 38.4
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 3.1e-55 220.3 228 54.8
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 5.9e-54 216.1 224 53.1
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 6.5e-53 212.6 313 47.0
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 3.8e-45 186.8 310 37.7
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 1.7e-40 171.4 234 43.2
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 9.4e-36 155.6 152 56.6
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 2.8e-32 144.1 155 47.1
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 4.2e-28 130.2 180 47.8
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 7.2e-28 129.4 136 52.9
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 6.3e-24 116.3 111 57.7
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 6.3e-24 116.3 185 38.4
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 1.6e-19 101.7 94 52.1
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 2.6e-17 94.4 75 64.0
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 5.7e-17 93.2 240 30.0
Aqoxy4G01147 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 8.9e-10 69.3 98 53.1
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 5.4e-07 60.1 137 31.4
GSVIVG01003278001 Vitis vinifera HOM05D002747 ORTHO05D003069 1.6e-06 58.5 62 43.5
Zm00001eb175040 Zea mays HOM05D002747 ORTHO05D003069 2.7e-06 57.8 49 51.0
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.5e-06 57.4 135 29.6
CANSAT01G0798 Cannabis sativa HOM05D002747 ORTHO05D003069 3.5e-06 57.4 53 47.2
CANSAT01G2415 Cannabis sativa HOM05D002747 ORTHO05D003069 3.5e-06 57.4 53 47.2
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 3.5e-06 57.4 138 29.7
Eucgr.H02771 Eucalyptus grandis HOM05D002747 ORTHO05D003069 3.5e-06 57.4 55 45.5
Aa31sc37G10 Aethionema arabicum HOM05D002747 ORTHO05D003069 4.6e-06 57.0 86 36.0
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 4.6e-06 57.0 115 32.2
CANSAT78G0345 Cannabis sativa HOM05D002747 ORTHO05D003069 6.0e-06 56.6 55 50.9
PGR083G0467 Punica granatum HOM05D002747 ORTHO05D003069 6.0e-06 56.6 55 47.3
Ca_17966_v3 Cicer arietinum L. HOM05D002747 ORTHO05D003069 7.8e-06 56.2 68 42.6
Ca_17967_v3 Cicer arietinum L. HOM05D002747 ORTHO05D003069 7.8e-06 56.2 68 42.6
COL.COLO4_15646 Corchorus olitorius HOM05D002747 ORTHO05D003069 7.8e-06 56.2 85 40.0


User provided reference genes

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