Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 4.3e-92 341.3 170 100.0
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 1.8e-77 292.7 170 85.3
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 4.4e-76 288.1 170 81.8
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.8e-75 285.4 170 84.1
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 1.4e-74 283.1 170 80.6
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 1.4e-74 283.1 170 81.8
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 3.1e-74 282.0 170 82.9
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 3.1e-74 282.0 170 82.4
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 4.1e-74 281.6 170 82.4
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.3e-74 281.2 170 82.4
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 7.0e-74 280.8 171 81.3
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 1.2e-73 280.0 168 80.4
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.6e-73 279.6 169 81.1
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 2.0e-73 279.3 169 82.2
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 2.7e-73 278.9 169 81.1
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.7e-73 278.9 169 81.1
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.7e-73 278.9 169 81.1
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 2.7e-73 278.9 171 78.9
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.5e-73 278.5 169 80.5
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.5e-73 278.5 169 80.5
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 3.5e-73 278.5 166 83.7
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 4.5e-73 278.1 159 85.5
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 7.7e-73 277.3 178 79.8
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.0e-72 276.9 169 80.5
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.0e-72 276.9 169 80.5
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.0e-72 276.9 172 82.6
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.3e-72 276.6 177 78.5
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.3e-72 276.6 170 82.4
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.7e-72 276.2 170 80.0
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 1.7e-72 276.2 171 78.4
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 1.7e-72 276.2 169 79.9
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.2e-72 275.8 170 79.4
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 2.9e-72 275.4 150 88.0
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 3.8e-72 275.0 161 82.6
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 3.8e-72 275.0 170 81.8
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 3.8e-72 275.0 170 81.2
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 5.0e-72 274.6 168 80.4
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 6.5e-72 274.2 170 80.0
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 6.5e-72 274.2 152 86.2
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 8.5e-72 273.9 170 79.4
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 8.5e-72 273.9 150 86.7
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.1e-71 273.5 170 79.4
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 1.1e-71 273.5 170 80.0
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.1e-71 273.5 170 81.2
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.1e-71 273.5 170 81.2
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 1.5e-71 273.1 170 77.6
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 1.9e-71 272.7 171 80.1
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 1.9e-71 272.7 151 86.8
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.5e-71 272.3 165 80.0
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 2.5e-71 272.3 170 78.8
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 3.2e-71 271.9 169 79.3
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 5.5e-71 271.2 171 79.5
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 5.5e-71 271.2 171 79.5
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 5.5e-71 271.2 168 79.8
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 5.5e-71 271.2 176 78.4
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 5.5e-71 271.2 162 81.5
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 5.5e-71 271.2 170 78.2
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 7.2e-71 270.8 170 78.2
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 7.2e-71 270.8 170 78.2
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 7.2e-71 270.8 163 81.0
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 7.2e-71 270.8 172 79.1
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 9.4e-71 270.4 153 86.3
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 1.2e-70 270.0 171 78.9
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 1.2e-70 270.0 171 78.9
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 1.2e-70 270.0 171 79.5
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.2e-70 270.0 170 79.4
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.2e-70 270.0 170 77.6
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 1.6e-70 269.6 170 77.6
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 1.6e-70 269.6 170 77.6
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 1.6e-70 269.6 170 77.6
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 2.1e-70 269.2 178 76.4
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.7e-70 268.9 170 80.0
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 3.6e-70 268.5 172 78.5
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 3.6e-70 268.5 161 80.1
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 4.7e-70 268.1 171 78.9
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 6.1e-70 267.7 170 77.1
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 1.0e-69 266.9 177 76.3
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.4e-69 266.5 151 83.4
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 1.4e-69 266.5 151 84.1
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 2.3e-69 265.8 170 76.5
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 2.3e-69 265.8 159 83.0
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 3.0e-69 265.4 151 82.8
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 4.0e-69 265.0 170 77.6
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 5.2e-69 264.6 170 76.5
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 6.8e-69 264.2 170 76.5
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 1.2e-68 263.5 151 85.4
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 1.5e-68 263.1 168 76.2
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.6e-68 262.3 151 82.1
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 3.4e-68 261.9 168 76.8
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 4.4e-68 261.5 168 76.2
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 4.4e-68 261.5 162 78.4
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 4.4e-68 261.5 174 77.6
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 5.7e-68 261.2 178 73.6
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 5.7e-68 261.2 174 75.3
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 5.7e-68 261.2 170 78.2
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 7.5e-68 260.8 168 76.2
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 9.8e-68 260.4 153 83.7
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 9.8e-68 260.4 153 83.7
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 1.3e-67 260.0 169 76.9
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 3.7e-67 258.5 174 76.4
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 4.8e-67 258.1 174 76.4
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 4.8e-67 258.1 168 76.2
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 4.8e-67 258.1 174 76.4
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 6.3e-67 257.7 173 76.3
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.4e-66 256.5 173 75.1
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 1.4e-66 256.5 151 82.1
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 4.1e-66 255.0 169 73.4
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 7.0e-66 254.2 179 71.5
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 7.0e-66 254.2 146 83.6
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 7.0e-66 254.2 163 76.7
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 9.1e-66 253.8 170 74.7
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 9.1e-66 253.8 170 74.7
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 9.1e-66 253.8 167 74.3
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 1.2e-65 253.4 151 80.8
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.2e-65 253.4 153 82.4
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 1.2e-65 253.4 175 74.3
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 2.0e-65 252.7 169 71.6
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 2.7e-65 252.3 149 79.2
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 2.7e-65 252.3 149 79.2
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.7e-65 252.3 169 73.4
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 3.5e-65 251.9 169 72.2
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 4.5e-65 251.5 175 73.7
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 7.7e-65 250.8 167 73.7
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 7.7e-65 250.8 143 84.6
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 1.7e-64 249.6 173 74.6
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 1.7e-64 249.6 175 73.1
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 6.5e-64 247.7 159 76.7
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 1.5e-63 246.5 169 71.0
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 4.2e-63 245.0 171 71.9
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 5.5e-63 244.6 162 74.7
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 1.2e-62 243.4 161 73.9
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 2.1e-62 242.7 129 89.1
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.7e-62 242.3 225 58.7
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 3.6e-62 241.9 151 76.8
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 4.7e-62 241.5 162 72.8
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 5.2e-61 238.0 154 74.7
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 6.8e-61 237.7 163 71.8
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 3.4e-60 235.3 163 70.6
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.8e-58 229.6 137 78.8
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 3.1e-58 228.8 161 70.8
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 4.7e-54 214.9 170 65.3
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 1.8e-53 213.0 156 64.7
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 3.0e-53 212.2 127 79.5
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 8.0e-46 187.6 132 69.7
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 4.0e-45 185.3 134 67.2
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.7e-43 179.9 155 61.3
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 2.2e-43 179.5 133 61.7
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 8.3e-43 177.6 111 75.7
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 7.0e-42 174.5 134 62.7
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 1.2e-41 173.7 108 83.3
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 2.7e-41 172.6 134 61.9
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 9.5e-39 164.1 147 57.1
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 3.7e-35 152.1 112 70.5
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 4.9e-35 151.8 170 53.5
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 4.1e-34 148.7 88 86.4
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 1.0e-32 144.1 86 84.9
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 2.3e-32 142.9 120 56.7
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 8.9e-29 131.0 107 63.6
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 4.9e-27 125.2 105 66.7
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 9.2e-26 120.9 98 64.3
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 6.6e-24 114.8 164 39.6
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 1.1e-23 114.0 71 78.9
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.1e-23 114.0 120 45.0
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.5e-23 112.8 125 43.2
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.5e-23 112.8 125 43.2
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 7.3e-23 111.3 170 44.1
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 5.8e-20 101.7 68 67.6
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 4.9e-19 98.6 55 74.5
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 6.4e-19 98.2 65 69.2
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 4.3e-15 85.5 95 41.1
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 4.3e-15 85.5 96 40.6
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 4.3e-15 85.5 96 40.6
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 5.6e-15 85.1 55 74.5
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 1.1e-13 80.9 70 60.0
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 2.2e-11 73.2 54 59.3
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 1.5e-07 60.5 92 39.1


User provided reference genes

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