Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 1.4e-23 112.1 57 100.0
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 2.8e-19 97.8 58 89.7
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 6.9e-18 93.2 55 85.5
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 1.0e-16 89.4 57 80.7
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 1.0e-16 89.4 56 78.6
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 1.7e-16 88.6 53 83.0
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 1.7e-16 88.6 56 78.6
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 2.2e-16 88.2 54 81.5
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 2.9e-16 87.8 54 81.5
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 3.8e-16 87.4 51 84.3
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 6.5e-16 86.7 58 81.0
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.2e-15 84.3 54 79.6
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 4.2e-15 84.0 54 72.2
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 5.5e-15 83.6 54 77.8
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 5.5e-15 83.6 55 81.8
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 7.2e-15 83.2 56 73.2
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 7.2e-15 83.2 51 76.5
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 9.3e-15 82.8 57 73.7
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 9.3e-15 82.8 54 75.9
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 9.3e-15 82.8 54 75.9
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 1.2e-14 82.4 48 85.4
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 1.2e-14 82.4 48 85.4
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 1.2e-14 82.4 57 75.4
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 1.6e-14 82.0 51 78.4
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 1.6e-14 82.0 57 73.7
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 1.6e-14 82.0 53 73.6
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 1.6e-14 82.0 51 76.5
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 2.1e-14 81.6 60 71.7
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 2.1e-14 81.6 50 84.0
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 2.7e-14 81.3 45 82.2
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 3.6e-14 80.9 58 74.1
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 3.6e-14 80.9 45 84.4
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 3.6e-14 80.9 51 80.4
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 3.6e-14 80.9 51 80.4
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 3.6e-14 80.9 53 73.6
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 4.6e-14 80.5 54 72.2
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 4.6e-14 80.5 45 82.2
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 6.1e-14 80.1 58 72.4
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 6.1e-14 80.1 55 78.2
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 6.1e-14 80.1 57 73.7
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 7.9e-14 79.7 58 72.4
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 7.9e-14 79.7 50 78.0
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 7.9e-14 79.7 50 78.0
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 1.0e-13 79.3 53 71.7
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 1.0e-13 79.3 53 71.7
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 1.0e-13 79.3 53 71.7
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 1.0e-13 79.3 53 71.7
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 1.0e-13 79.3 45 82.2
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 1.0e-13 79.3 53 71.7
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 1.0e-13 79.3 51 80.4
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 1.4e-13 79.0 58 70.7
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.4e-13 79.0 54 75.9
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.4e-13 79.0 54 75.9
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 1.4e-13 79.0 54 68.5
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 1.8e-13 78.6 52 71.2
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 2.3e-13 78.2 49 81.6
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 2.3e-13 78.2 49 77.6
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 2.3e-13 78.2 56 73.2
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 2.3e-13 78.2 50 72.0
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 3.0e-13 77.8 54 72.2
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 3.0e-13 77.8 58 70.7
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 3.0e-13 77.8 58 70.7
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 6.7e-13 76.6 41 87.8
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 6.7e-13 76.6 54 66.7
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 6.7e-13 76.6 54 66.7
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 8.8e-13 76.3 57 70.2
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 8.8e-13 76.3 57 71.9
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 2.5e-12 74.7 58 67.2
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 2.5e-12 74.7 58 67.2
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 2.5e-12 74.7 49 79.6
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 2.5e-12 74.7 56 64.3
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 3.3e-12 74.3 45 80.0
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 3.3e-12 74.3 56 67.9
FAN08G1799 Fragaria x ananassa HOM05D007758 ORTHO05D009788 4.3e-12 73.9 48 83.3
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 7.4e-12 73.2 49 77.6
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 1.3e-11 72.4 53 66.0
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 1.3e-11 72.4 53 66.0
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.3e-11 72.4 54 70.4
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.7e-11 72.0 54 70.4
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 6.3e-11 70.1 75 54.7
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.1e-10 67.8 49 69.4
Nitab4.5_0010949g0010 Nicotiana tabacum HOM05D007758 ORTHO05D009788 5.3e-10 67.0 41 78.0
RcHm_v2.0_Chr7g0205921 Rosa chinensis HOM05D007758 ORTHO05D009788 9.1e-10 66.2 61 65.6
BolC7t45365H Brassica oleracea HOM05D007758 ORTHO05D009788 7.7e-09 63.2 37 78.4
unitig_744.g24437 Utricularia gibba HOM05D007758 ORTHO05D009788 8.5e-08 59.7 85 44.7
TWI81G0786 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 1.6e-06 55.5 35 74.3
Pp3c7_6680 Physcomitrium patens HOM05D052415 ORTHO05D048764 3.6e-06 54.3 53 47.2


User provided reference genes

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