Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0041 Trochodendron aralioides HOM05D006198 ORTHO05D008226 4.2e-128 461.5 250 100.0
TAR629G2249 Trochodendron aralioides HOM05D006198 ORTHO05D008226 6.3e-124 447.6 249 97.2
Nn3g20699 Nelumbo nucifera HOM05D006198 ORTHO05D008226 1.2e-101 373.6 247 83.4
Nn6g32274 Nelumbo nucifera HOM05D006198 ORTHO05D008226 6.0e-98 361.3 247 81.4
Dinv30723 Davidia involucrata HOM05D006198 ORTHO05D008226 1.3e-97 360.1 249 79.1
Thecc.06G152500 Theobroma cacao HOM05D006198 ORTHO05D008226 5.2e-94 348.2 250 76.8
MBI10_g21114_MAGBIO Magnolia biondii HOM05D006198 ORTHO05D008226 1.1e-91 340.5 249 75.9
COL.COLO4_38286 Corchorus olitorius HOM05D006198 ORTHO05D008226 2.4e-91 339.3 254 72.8
CsaV3_6G051650 Cucumis sativus L. HOM05D006198 ORTHO05D008226 1.2e-90 337.0 248 72.2
Prupe.4G078700 Prunus persica HOM05D006198 ORTHO05D008226 1.2e-90 337.0 245 74.7
MELO3C007142.2 Cucumis melo HOM05D006198 ORTHO05D008226 1.6e-90 336.7 248 72.6
Duzib160G0456 Durio zibethinus HOM05D006198 ORTHO05D008226 3.5e-90 335.5 250 75.2
TWI09G1426 Tripterygium wilfordii HOM05D006198 ORTHO05D008226 3.5e-90 335.5 245 73.1
RcHm_v2.0_Chr5g0013711 Rosa chinensis HOM05D006198 ORTHO05D008226 6.0e-90 334.7 245 73.9
TWI53G0219 Tripterygium wilfordii HOM05D006198 ORTHO05D008226 6.0e-90 334.7 246 73.2
MD10G1263800 Malus domestica HOM05D006198 ORTHO05D008226 1.7e-89 333.2 247 74.1
FvH4_3g05790 Fragaria vesca HOM05D006198 ORTHO05D008226 2.3e-89 332.8 247 73.3
Atru.chr10.1313 Acer truncatum HOM05D006198 ORTHO05D008226 5.1e-89 331.6 245 73.5
Atru.chr10.1293 Acer truncatum HOM05D006198 ORTHO05D008226 6.6e-89 331.3 245 73.1
FAN16G3463 Fragaria x ananassa HOM05D006198 ORTHO05D008226 8.6e-89 330.9 245 73.1
ClCG01G024530 Citrullus lanatus HOM05D006198 ORTHO05D008226 2.5e-88 329.3 249 71.9
CiPaw.09G125600 Carya illinoinensis HOM05D006198 ORTHO05D008226 7.3e-88 327.8 249 73.1
Atru.chr10.1297 Acer truncatum HOM05D006198 ORTHO05D008226 2.1e-87 326.2 245 71.8
QL05p058855 Quercus lobata HOM05D006198 ORTHO05D008226 4.7e-87 325.1 244 72.5
FAN11G0340 Fragaria x ananassa HOM05D006198 ORTHO05D008226 6.2e-87 324.7 247 72.1
Actinidia39563 Actinidia chinensis HOM05D006198 ORTHO05D008226 3.1e-86 322.4 249 71.9
Cpa.g.sc166.25 Carica papaya HOM05D006198 ORTHO05D008226 3.1e-86 322.4 243 74.1
Aqoxy4G00108 Aquilegia oxysepala HOM05D006198 ORTHO05D008226 6.9e-86 321.2 248 71.4
Sed0015649 Sechium edule HOM05D006198 ORTHO05D008226 8.9e-86 320.9 249 68.3
GSVIVG01021428001 Vitis vinifera HOM05D006198 ORTHO05D008226 1.5e-85 320.1 225 76.4
PSO170G0869 Papaver somniferum HOM05D006198 ORTHO05D008226 2.0e-85 319.7 237 75.1
Lj2A307G26 Lonicera japonica HOM05D006198 ORTHO05D008226 5.8e-85 318.2 256 71.9
Eucgr.E02394 Eucalyptus grandis HOM05D006198 ORTHO05D008226 9.9e-85 317.4 250 71.2
Gohir.D09G077900 Gossypium hirsutum HOM05D006198 ORTHO05D008226 2.9e-84 315.8 251 70.5
Ciclev10016356m.g Citrus clementina HOM05D006198 ORTHO05D008226 1.1e-83 313.9 243 72.4
Gohir.A09G077700 Gossypium hirsutum HOM05D006198 ORTHO05D008226 1.4e-83 313.5 251 70.1
Gorai.006G093100 Gossypium raimondii HOM05D006198 ORTHO05D008226 3.2e-83 312.4 251 70.1
Potri.011G080300 Populus trichocarpa HOM05D006198 ORTHO05D008226 5.4e-83 311.6 246 70.3
Manes.15G120300 Manihot esculenta HOM05D006198 ORTHO05D008226 9.3e-83 310.8 247 70.9
PGR083G0877 Punica granatum HOM05D006198 ORTHO05D008226 9.3e-83 310.8 249 67.9
Lalb_Chr12g0208941 Lupinus albus HOM05D006198 ORTHO05D008226 1.7e-81 306.6 245 69.0
Hma1.2p1_0259F.1_g104290 Hydrangea macrophylla HOM05D006198 ORTHO05D008226 1.9e-80 303.1 247 71.7
vmacro15943 Vaccinium macrocarpon HOM05D006198 ORTHO05D008226 2.5e-80 302.8 250 68.8
arahy.Tifrunner.gnm1.ann1.8B838V Arachis hypogaea HOM05D006198 ORTHO05D008226 4.3e-80 302.0 248 66.1
HanXRQChr01g0020411 Helianthus annuus HOM05D006198 ORTHO05D008226 9.6e-80 300.8 247 67.6
arahy.Tifrunner.gnm1.ann1.ET305C Arachis hypogaea HOM05D006198 ORTHO05D008226 1.3e-79 300.4 248 65.7
CDE02G2137 Ceratophyllum demersum HOM05D006198 ORTHO05D008226 1.3e-79 300.4 248 68.5
ECA248G2800 Erigeron canadensis HOM05D006198 ORTHO05D008226 1.3e-79 300.4 246 66.7
Actinidia07684 Actinidia chinensis HOM05D006198 ORTHO05D008226 2.8e-79 299.3 250 68.8
ATR0585G073 Amborella trichopoda HOM05D006198 ORTHO05D008226 2.8e-79 299.3 250 71.2
Haze_05575 Corylus avellana HOM05D006198 ORTHO05D008226 6.9e-78 294.7 306 59.5
Lj4g0025062 Lotus japonicus HOM05D006198 ORTHO05D003063 6.9e-78 294.7 248 67.7
Phvul.009G219000 Phaseolus vulgaris HOM05D006198 ORTHO05D008226 1.2e-77 293.9 250 64.0
Glyma.09G082200 Glycine max HOM05D006198 ORTHO05D008226 1.5e-77 293.5 247 65.6
CANSAT35G1481 Cannabis sativa HOM05D006198 ORTHO05D008226 7.6e-77 291.2 247 67.6
Cfa000959 Carpinus fangiana HOM05D006198 ORTHO05D008226 9.9e-77 290.8 224 72.8
EL10Ac8g19743 Beta vulgaris HOM05D006198 ORTHO05D008226 2.2e-76 289.7 249 63.5
Lsat_1_v5_gn_1_96760 Lactuca sativa HOM05D006198 ORTHO05D008226 4.9e-76 288.5 247 65.6
Glyma.15G190700 Glycine max HOM05D006198 ORTHO05D008226 1.1e-75 287.3 248 64.1
Nitab4.5_0001655g0050 Nicotiana tabacum HOM05D006198 ORTHO05D008226 3.2e-75 285.8 252 65.9
Sc24g0001850 Simmondsia chinensis HOM05D006198 ORTHO05D008226 5.4e-75 285.0 246 67.1
Nitab4.5_0005219g0070 Nicotiana tabacum HOM05D006198 ORTHO05D008226 7.1e-75 284.6 252 65.9
CAN.G650.24 Capsicum annuum HOM05D006198 ORTHO05D008226 2.7e-74 282.7 251 65.3
AUR62030229 Chenopodium quinoa HOM05D006198 ORTHO05D008226 3.5e-74 282.3 292 56.8
Ca_18268_v3 Cicer arietinum L. HOM05D006198 ORTHO05D008226 7.9e-74 281.2 245 64.9
Sopen02g019760 Solanum pennellii HOM05D006198 ORTHO05D008226 7.9e-74 281.2 254 66.5
Psat7g090320 Pisum sativum HOM05D006198 ORTHO05D008226 1.3e-73 280.4 245 64.9
MSTRG.16229 Avicennia marina HOM05D006198 ORTHO05D008226 8.7e-73 277.7 251 63.7
PGSC0003DMG401008288 Solanum tuberosum HOM05D006198 ORTHO05D008226 1.9e-72 276.6 251 65.3
HPP92_023299 Vanilla planifolia HOM05D006198 ORTHO05D008226 2.5e-72 276.2 246 64.2
VMungo1309G2860 Vigna mungo HOM05D006198 ORTHO05D008226 3.3e-72 275.8 273 57.9
Peaxi162Scf00796g00114 Petunia axillaris HOM05D006198 ORTHO05D008226 7.4e-72 274.6 238 64.7
SalBow8G2100 Salvia bowleyana HOM05D006198 ORTHO05D008226 6.2e-71 271.6 254 63.8
HPP92_023266 Vanilla planifolia HOM05D006198 ORTHO05D008226 3.1e-70 269.2 246 63.0
Medtr4g096750 Medicago truncatula HOM05D006198 ORTHO05D008226 6.9e-70 268.1 246 63.0
Os01g0666500 Oryza sativa ssp. japonica HOM05D006198 ORTHO05D008226 6.9e-70 268.1 242 63.6
Cc09_g09250 Coffea canephora HOM05D006198 ORTHO05D008226 1.5e-69 266.9 231 66.2
AUR62027530 Chenopodium quinoa HOM05D006198 ORTHO05D008226 2.6e-69 266.2 272 56.6
Migut.M00923 Erythranthe guttata HOM05D006198 ORTHO05D008226 1.7e-68 263.5 256 61.7
DCAR_025303 Daucus carota HOM05D006198 ORTHO05D008226 2.2e-68 263.1 250 63.6
SGA_v2.0_scaffold333G48994 Striga asiatica HOM05D006198 ORTHO05D008226 6.4e-68 261.5 253 61.3
Sabra11G0070000 Salix brachista HOM05D006198 ORTHO05D008226 3.5e-66 255.8 202 69.8
Zm00001eb157440 Zea mays HOM05D006198 ORTHO05D008226 3.5e-66 255.8 246 61.8
Sabra11G0067700 Salix brachista HOM05D006198 ORTHO05D008226 1.0e-65 254.2 202 68.8
PSO017G1039 Papaver somniferum HOM05D006198 ORTHO05D008226 1.3e-65 253.8 205 68.8
Zm00001eb359760 Zea mays HOM05D006198 ORTHO05D008226 6.7e-65 251.5 249 60.2
THA.LOC104827723 Tarenaya hassleriana HOM05D006198 ORTHO05D008226 2.0e-61 240.0 248 57.7
SEGI_09220 Sequoiadendron giganteum HOM05D006198 ORTHO05D008226 1.3e-60 237.3 249 57.8
SGA_v2.0_scaffold1G00157 Striga asiatica HOM05D006198 ORTHO05D008226 4.9e-60 235.3 247 57.9
Aa31LG6G950 Aethionema arabicum HOM05D006198 ORTHO05D008226 4.6e-58 228.8 244 56.6
unitig_578.g16668 Utricularia gibba HOM05D006198 ORTHO05D008226 4.6e-58 228.8 250 54.8
Thhalv10024846m.g Eutrema salsugineum HOM05D006198 ORTHO05D003063 7.9e-58 228.0 242 57.4
Oeu030914.3 Olea europaea HOM05D006198 ORTHO05D008226 1.8e-57 226.9 294 50.7
BolC7t45461H Brassica oleracea HOM05D006198 ORTHO05D003063 1.5e-56 223.8 246 56.9
Sp7g15810 Schrenkiella parvula HOM05D006198 ORTHO05D008226 1.5e-56 223.8 256 54.3
C07p49570 Brassica napus HOM05D006198 ORTHO05D003063 1.9e-56 223.4 246 56.9
A03p51170 Brassica napus HOM05D006198 ORTHO05D003063 5.7e-56 221.9 247 55.9
Solyc02g070680.4 Solanum lycopersicum HOM05D006198 ORTHO05D008226 7.4e-56 221.5 208 63.5
BraA03t14199Z Brassica rapa HOM05D006198 ORTHO05D003063 9.6e-56 221.1 246 55.7
Carub.0007s2303 Capsella rubella HOM05D006198 ORTHO05D008226 6.3e-55 218.4 248 57.3
AL7G36130 Arabidopsis lyrata HOM05D006198 ORTHO05D003063 1.1e-54 217.6 247 53.4
Rhsim02G0156800 Rhododendron simsii HOM05D006198 ORTHO05D008226 3.1e-54 216.1 243 55.6
AagrBONN_evm.TU.Sc2ySwM_228.4358 Anthoceros agrestis HOM05D006198 ORTHO05D008226 4.1e-54 215.7 235 57.0
Pp3c24_15440 Physcomitrium patens HOM05D006198 ORTHO05D008226 1.3e-52 210.7 250 52.4
Mapoly0061s0133 Marchantia polymorpha HOM05D006198 ORTHO05D008226 6.1e-50 201.8 233 55.8
BcaNung05123 Brassica carinata HOM05D006198 ORTHO05D008226 1.1e-48 197.6 225 54.2
BcaNung05671 Brassica carinata HOM05D006198 ORTHO05D008226 2.8e-47 193.0 224 54.0
SMO361G0608 Selaginella moellendorffii HOM05D006198 ORTHO05D008226 6.5e-44 181.8 248 48.8
Hund21523 Selenicereus undatus HOM05D006198 ORTHO05D008226 3.6e-42 176.0 152 65.8
CDE08G0452 Ceratophyllum demersum HOM05D001706 ORTHO05D008226 1.1e-38 164.5 140 66.4
CARHR225050 Cardamine hirsuta HOM05D006198 ORTHO05D008226 7.2e-35 151.8 157 59.9
Atru.chr10.1305 Acer truncatum HOM05D006198 ORTHO05D008226 1.5e-27 127.5 119 60.5
Atru.chr10.1302 Acer truncatum HOM05D000067 ORTHO05D000280 9.4e-27 124.8 91 71.4
Zm00001eb243030 Zea mays HOM05D006198 ORTHO05D008226 1.8e-25 120.6 121 57.0
Zm00001eb373810 Zea mays HOM05D006198 ORTHO05D008226 1.8e-25 120.6 121 57.0
Zm00001eb235600 Zea mays HOM05D006198 ORTHO05D008226 1.8e-22 110.5 115 53.9
SEGI_25377 Sequoiadendron giganteum HOM05D006198 ORTHO05D008226 7.0e-22 108.6 93 60.2
HanXRQChr14g0435081 Helianthus annuus HOM05D006198 ORTHO05D008226 5.0e-20 102.4 110 56.4
CBR_g31781 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-19 100.5 255 34.5
Gohir.D05G152000 Gossypium hirsutum HOM05D006198 ORTHO05D008226 2.5e-19 100.1 90 64.4
Gorai.009G156000 Gossypium raimondii HOM05D006198 ORTHO05D008226 8.8e-17 91.7 94 59.6
CBR_g39020 Chara braunii HOM05D006198 ORTHO05D001303 1.4e-14 84.3 183 35.5
Cre12.g523832 Chlamydomonas reinhardtii HOM05D006198 ORTHO05D008226 5.2e-09 65.9 194 33.5
Cre12.g523800 Chlamydomonas reinhardtii HOM05D006198 ORTHO05D008226 5.7e-08 62.4 64 56.2
MD05G1286000 Malus domestica HOM05D006198 ORTHO05D008226 1.3e-07 61.2 46 76.1
Sabra11G0070100 Salix brachista HOM05D006198 ORTHO05D008226 3.1e-06 56.6 49 65.3


User provided reference genes

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