Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0037 Trochodendron aralioides HOM05D007829 ORTHO05D009903 1.3e-85 319.7 159 100.0
Rhsim02G0099400 Rhododendron simsii HOM05D007829 ORTHO05D009903 7.3e-41 171.0 116 66.4
Actinidia39272 Actinidia chinensis HOM05D007829 ORTHO05D009903 2.8e-40 169.1 117 66.7
TAR627G0564 Trochodendron aralioides HOM05D007829 ORTHO05D009903 6.8e-39 164.5 133 61.7
TAR627G1193 Trochodendron aralioides HOM05D007829 ORTHO05D009903 6.8e-39 164.5 133 61.7
Hma1.2p1_0657F.1_g197120 Hydrangea macrophylla HOM05D007829 ORTHO05D009903 7.5e-38 161.0 132 58.3
Prupe.4G010000 Prunus persica HOM05D007829 ORTHO05D009903 6.4e-37 157.9 127 57.5
Dinv07407 Davidia involucrata HOM05D007829 ORTHO05D009903 1.1e-36 157.1 127 60.6
PSO675G8147 Papaver somniferum HOM05D007829 ORTHO05D009903 1.9e-36 156.4 125 60.8
Nn1g07397 Nelumbo nucifera HOM05D007829 ORTHO05D009903 1.0e-34 150.6 133 56.4
Thecc.06G233800 Theobroma cacao HOM05D007829 ORTHO05D009903 1.0e-34 150.6 116 57.8
CSS0014217 Camellia sinensis var. sinensis HOM05D007829 ORTHO05D009903 1.3e-34 150.2 117 59.0
Gohir.A10G009200 Gossypium hirsutum HOM05D007829 ORTHO05D009903 1.3e-34 150.2 116 54.3
PSO541G5076 Papaver somniferum HOM05D007829 ORTHO05D009903 1.3e-34 150.2 123 58.5
Aqoxy2G02687 Aquilegia oxysepala HOM05D007829 ORTHO05D009903 1.7e-34 149.8 97 67.0
Potri.016G013200 Populus trichocarpa HOM05D007829 ORTHO05D009903 1.7e-34 149.8 116 58.6
Gorai.011G009700 Gossypium raimondii HOM05D007829 ORTHO05D009903 3.0e-34 149.1 116 53.4
Gohir.D10G008900 Gossypium hirsutum HOM05D007829 ORTHO05D009903 3.9e-34 148.7 116 53.4
COL.COLO4_31889 Corchorus olitorius HOM05D007829 ORTHO05D009903 1.9e-33 146.4 114 57.9
Sabra16G0015800 Salix brachista HOM05D007829 ORTHO05D009903 4.3e-33 145.2 118 55.1
TWI38G1785 Tripterygium wilfordii HOM05D007829 ORTHO05D009903 5.6e-33 144.8 93 68.8
Sabra16G0002200 Salix brachista HOM05D007829 ORTHO05D009903 9.5e-33 144.1 116 55.2
Sc05g0009620 Simmondsia chinensis HOM05D007829 ORTHO05D009903 1.6e-32 143.3 120 54.2
Cpa.g.sc75.113 Carica papaya HOM05D007829 ORTHO05D009903 2.1e-32 142.9 114 54.4
MD10G1332100 Malus domestica HOM05D007829 ORTHO05D009903 3.6e-32 142.1 116 53.4
Manes.08G071000 Manihot esculenta HOM05D007829 ORTHO05D009903 3.6e-32 142.1 116 53.4
CiPaw.10G078200 Carya illinoinensis HOM05D007829 ORTHO05D009903 6.2e-32 141.4 126 50.0
arahy.Tifrunner.gnm1.ann1.G424KC Arachis hypogaea HOM05D007829 ORTHO05D009903 5.8e-30 134.8 116 52.6
Migut.M01399 Erythranthe guttata HOM05D007829 ORTHO05D009903 1.3e-29 133.7 127 48.0
Lj6g0010113 Lotus japonicus HOM05D007829 ORTHO05D009903 8.4e-29 131.0 117 51.3
Cc00_g34400 Coffea canephora HOM05D007829 ORTHO05D009903 5.4e-28 128.3 139 47.5
SGA_v2.0_scaffold4G01872 Striga asiatica HOM05D007829 ORTHO05D009903 5.4e-28 128.3 118 52.5
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 2.1e-27 126.3 82 65.9
Sopen11g007080 Solanum pennellii HOM05D007829 ORTHO05D009903 2.1e-27 126.3 98 57.1
BraA01t01318Z Brassica rapa HOM05D007829 ORTHO05D009903 4.6e-27 125.2 115 50.4
CARHR229280 Cardamine hirsuta HOM05D007829 ORTHO05D009903 4.6e-27 125.2 118 47.5
Ciclev10018278m.g Citrus clementina HOM05D007829 ORTHO05D009903 4.6e-27 125.2 83 65.1
Eucgr.D01411 Eucalyptus grandis HOM05D007829 ORTHO05D009903 4.6e-27 125.2 114 50.0
Sp7g20500 Schrenkiella parvula HOM05D007829 ORTHO05D009903 7.8e-27 124.4 115 48.7
Oeu002768.1 Olea europaea HOM05D007829 ORTHO05D009903 1.0e-26 124.0 117 49.6
Medtr2g025760 Medicago truncatula HOM05D007829 ORTHO05D009903 1.3e-26 123.6 109 54.1
PGSC0003DMG400013350 Solanum tuberosum HOM05D007829 ORTHO05D009903 1.7e-26 123.2 98 56.1
THA.LOC104813576 Tarenaya hassleriana HOM05D007829 ORTHO05D009903 1.7e-26 123.2 115 47.0
Solyc11g012300.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 3.0e-26 122.5 96 57.3
CANSAT56G1477 Cannabis sativa HOM05D007829 ORTHO05D009903 3.9e-26 122.1 120 49.2
A01p13730 Brassica napus HOM05D007829 ORTHO05D009903 5.1e-26 121.7 115 47.8
PGR004G1136 Punica granatum HOM05D007829 ORTHO05D009903 1.1e-25 120.6 117 50.4
Psat1g175960 Pisum sativum HOM05D007829 ORTHO05D009903 1.5e-25 120.2 85 63.5
TPR.G13103 Trifolium pratense HOM05D007829 ORTHO05D009903 1.5e-25 120.2 109 53.2
Thhalv10027004m.g Eutrema salsugineum HOM05D007829 ORTHO05D009903 5.6e-25 118.2 112 49.1
CDE11G1237 Ceratophyllum demersum HOM05D007829 ORTHO05D009903 9.6e-25 117.5 95 55.8
C01p16640 Brassica napus HOM05D007829 ORTHO05D009903 1.6e-24 116.7 115 47.0
BolC1t01611H Brassica oleracea HOM05D007829 ORTHO05D009903 1.6e-24 116.7 115 47.0
AT4G22370 Arabidopsis thaliana HOM05D007829 ORTHO05D009903 4.7e-24 115.2 111 46.8
BcaC09g51100 Brassica carinata HOM05D007829 ORTHO05D009903 4.7e-24 115.2 115 46.1
FvH4_3g00940 Fragaria vesca HOM05D007829 ORTHO05D009903 4.7e-24 115.2 114 42.1
Carub.0007s1893 Capsella rubella HOM05D007829 ORTHO05D009903 8.1e-24 114.4 118 45.8
FAN21G3309 Fragaria x ananassa HOM05D007829 ORTHO05D009903 1.4e-23 113.6 97 46.4
RcHm_v2.0_Chr5g0001461 Rosa chinensis HOM05D007829 ORTHO05D009903 2.4e-23 112.8 97 49.5
Glyma.15G114900 Glycine max HOM05D007829 ORTHO05D009903 3.1e-23 112.5 131 42.0
QL05p069622 Quercus lobata HOM05D007829 ORTHO05D009903 4.0e-23 112.1 133 43.6
VMungo0540G1426 Vigna mungo HOM05D007829 ORTHO05D009903 4.0e-23 112.1 112 46.4
Glyma.09G010400 Glycine max HOM05D007829 ORTHO05D009903 8.9e-23 110.9 117 46.2
FAN25G0937 Fragaria x ananassa HOM05D007829 ORTHO05D009903 2.0e-22 109.8 130 40.0
AL7G31240 Arabidopsis lyrata HOM05D007829 ORTHO05D009903 2.6e-22 109.4 92 48.9
Phvul.006G143000 Phaseolus vulgaris HOM05D007829 ORTHO05D009903 5.8e-22 108.2 115 44.3
Duzib235G0645 Durio zibethinus HOM05D007829 ORTHO05D009903 1.7e-21 106.7 66 66.7
Aa31LG6G4470 Aethionema arabicum HOM05D007829 ORTHO05D009903 8.4e-21 104.4 84 52.4
Lalb_Chr15g0088001 Lupinus albus HOM05D007829 ORTHO05D009903 1.1e-20 104.0 97 47.4
ATR0712G049 Amborella trichopoda HOM05D007829 ORTHO05D009903 3.0e-18 95.9 97 45.4
Peaxi162Scf00352g00215 Petunia axillaris HOM05D007829 ORTHO05D009903 1.1e-17 94.0 66 57.6
unitig_5.g30996 Utricularia gibba HOM05D000093 ORTHO05D001309 1.8e-15 86.7 97 45.4
Solyc11g012310.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 3.8e-13 79.0 86 46.5
MBI19_g06149_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 6.4e-13 78.2 66 45.5
SalBow8G1028 Salvia bowleyana HOM05D007829 ORTHO05D009903 7.9e-11 71.2 117 36.8
Sed0017863 Sechium edule HOM05D007829 ORTHO05D009903 6.6e-10 68.2 82 37.8
Eucgr.E00647 Eucalyptus grandis HOM05D002745 ORTHO05D002945 9.6e-09 64.3 94 36.2
Gorai.008G249500 Gossypium raimondii HOM05D002745 ORTHO05D002945 9.6e-09 64.3 96 34.4
HPP92_028537 Vanilla planifolia HOM05D002745 ORTHO05D002945 2.1e-08 63.2 91 36.3
Gohir.A12G234200 Gossypium hirsutum HOM05D002745 ORTHO05D002945 2.8e-08 62.8 96 33.3
Gohir.D12G233100 Gossypium hirsutum HOM05D002745 ORTHO05D002945 2.8e-08 62.8 96 33.3
Nn1g01627 Nelumbo nucifera HOM05D002745 ORTHO05D002945 8.1e-08 61.2 96 33.3
Thecc.08G146300 Theobroma cacao HOM05D002745 ORTHO05D002945 8.1e-08 61.2 100 37.0
FAN08G3121 Fragaria x ananassa HOM05D002745 ORTHO05D002945 1.1e-07 60.8 94 30.9
FvH4_5g03000 Fragaria vesca HOM05D002745 ORTHO05D002945 1.4e-07 60.5 94 30.9
Hma1.2p1_0216F.1_g090940 Hydrangea macrophylla HOM05D002745 ORTHO05D002945 1.4e-07 60.5 94 36.2
Sed0022750 Sechium edule HOM05D007829 ORTHO05D009903 1.4e-07 60.5 75 33.3
COL.COLO4_03661 Corchorus olitorius HOM05D002745 ORTHO05D002945 2.4e-07 59.7 120 30.0
Lsat_1_v5_gn_4_62060 Lactuca sativa HOM05D007829 ORTHO05D009903 2.4e-07 59.7 57 42.1
ClCG01G021470 Citrullus lanatus HOM05D007829 ORTHO05D009903 3.1e-07 59.3 75 32.0
SEGI_29799 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 3.1e-07 59.3 96 32.3
Thecc.03G284700 Theobroma cacao HOM05D002745 ORTHO05D002945 3.1e-07 59.3 96 33.3
CsaV3_6G048490 Cucumis sativus L. HOM05D007829 ORTHO05D009903 6.9e-07 58.2 74 28.4
Lsat_1_v5_gn_6_4781 Lactuca sativa HOM05D002745 ORTHO05D002945 6.9e-07 58.2 96 36.5
HPP92_015464 Vanilla planifolia HOM05D007829 ORTHO05D009903 6.9e-07 58.2 76 32.9
PSO063G0080 Papaver somniferum HOM05D002745 ORTHO05D002945 9.0e-07 57.8 96 28.1
EL10Ac5g12821 Beta vulgaris HOM05D002745 ORTHO05D002945 1.2e-06 57.4 96 30.2
PSO832G1614 Papaver somniferum HOM05D002745 ORTHO05D002945 1.2e-06 57.4 96 28.1
Atru.chr9.2137 Acer truncatum HOM05D002745 ORTHO05D002945 2.6e-06 56.2 95 31.6
Duzib205G0538 Durio zibethinus HOM05D002745 ORTHO05D002945 2.6e-06 56.2 96 31.2
PGR042G0864 Punica granatum HOM05D002745 ORTHO05D002945 2.6e-06 56.2 97 33.0
SEGI_30590 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 2.6e-06 56.2 95 30.5
COL.COLO4_09994 Corchorus olitorius HOM05D002745 ORTHO05D002945 5.8e-06 55.1 96 33.3
Ah.11g043280 Amaranthus hybridus HOM05D002745 ORTHO05D002945 7.6e-06 54.7 77 33.8
EL10Ac1g01732 Beta vulgaris HOM05D002745 ORTHO05D002945 7.6e-06 54.7 55 43.6
QL12p032067 Quercus lobata HOM05D002745 ORTHO05D002945 7.6e-06 54.7 96 31.2
SEGI_16879 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 7.6e-06 54.7 88 34.1
MBI16_g31712_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 9.9e-06 54.3 67 38.8
Sc22g0005360 Simmondsia chinensis HOM05D002745 ORTHO05D002945 9.9e-06 54.3 95 27.4


User provided reference genes

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