Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 3898.6 1958 100.0
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2876.7 1961 73.9
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2812.7 1858 74.9
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2801.5 1961 72.1
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2728.0 1968 69.3
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2682.5 1968 68.6
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2660.2 1968 68.1
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2630.1 1990 66.9
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2629.7 2048 66.6
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2604.3 1962 66.7
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2588.9 1962 66.5
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2561.2 1975 66.2
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2553.9 1968 66.9
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2538.1 1959 65.7
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2525.0 1963 64.8
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2516.9 1962 65.8
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2512.6 1965 65.5
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 2506.1 1962 64.6
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2501.5 1956 64.7
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2499.9 2165 60.9
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2499.5 1966 64.5
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2499.5 1973 65.0
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2490.3 1958 63.7
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2462.6 1962 62.7
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2444.8 1960 62.9
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2438.3 1969 62.2
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2430.2 1971 62.5
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2427.9 1946 62.7
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2420.6 2137 60.1
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2415.6 1946 62.3
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2411.7 1945 62.7
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2409.8 1947 62.3
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2407.1 1972 61.9
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2403.2 1968 61.3
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2389.8 1971 61.5
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2387.8 1937 64.4
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2385.1 2160 58.4
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2361.3 1962 60.6
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2347.8 1975 60.0
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2342.0 1991 61.0
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2336.6 1959 60.1
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2331.6 1961 61.7
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2331.2 1962 61.8
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2323.1 1971 59.9
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2317.0 1958 59.8
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2313.5 1958 59.9
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 2311.6 2269 53.6
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2303.1 1960 60.7
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2297.7 1960 59.2
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2285.0 1967 59.1
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2280.8 1958 59.6
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 2278.1 1812 64.0
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2267.3 1839 61.8
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2231.1 1953 59.9
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2204.5 1962 58.6
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 2189.8 1947 57.4
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 2179.8 1603 68.3
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 2178.7 1951 56.8
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 2176.4 1968 56.4
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 2175.2 1964 56.7
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 2174.8 1952 56.8
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 2172.5 1958 56.7
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 2166.7 1976 56.2
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 2166.0 1964 56.5
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 2160.6 1963 56.3
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2152.9 1992 56.1
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 2145.5 1961 56.0
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 2144.4 1947 57.4
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 2142.9 1973 56.5
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2142.9 1989 55.7
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 2140.5 1954 58.5
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 2135.5 2009 54.4
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 2127.8 1959 56.5
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 2098.6 1981 55.9
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 2080.8 1999 55.4
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2023.8 1962 54.1
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1976.4 1833 55.3
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1672.9 1190 69.5
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1624.4 1277 63.7
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1572.4 1833 46.9
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1541.9 1269 61.3
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1382.5 1992 40.3
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1381.3 2062 40.2
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1326.6 1079 62.7
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1298.5 1436 49.0
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1297.0 2019 38.4
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1270.0 1007 65.1
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1148.3 1173 52.6
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 0.0e+00 1088.9 2136 34.4
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 2.1e-283 980.3 889 57.0
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.9e-280 969.9 974 52.8
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.2e-275 954.5 771 61.6
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 6.9e-274 948.7 1004 50.2
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 9.3e-271 938.3 1125 48.4
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 3.5e-270 936.4 780 62.6
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 6.7e-261 905.6 961 51.2
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 2.5e-199 701.0 675 56.7
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 7.0e-194 682.9 523 65.4
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 2.2e-171 608.2 497 62.0
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 1.5e-159 568.9 524 53.1
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 2.8e-158 564.7 522 56.3
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.4e-154 552.4 452 62.6
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 4.6e-153 547.4 393 70.2
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 5.3e-149 533.9 652 47.2
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.5e-148 532.3 432 62.7
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 1.5e-135 489.2 853 37.2
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.0e-123 449.9 292 74.0
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 5.3e-109 401.0 337 63.2
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.0e-107 396.7 393 53.7
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 7.2e-98 364.0 258 67.1
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 8.5e-91 340.5 224 75.4
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 4.4e-87 328.2 330 54.5
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 6.8e-80 304.3 374 47.6
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 5.7e-79 301.2 231 66.2
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 1.2e-71 276.9 195 69.7
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 2.2e-70 272.7 232 63.4
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 1.4e-69 270.0 195 67.7
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 7.3e-66 257.7 318 45.0
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 2.1e-52 213.0 293 43.7
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 2.7e-52 212.6 298 40.9
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 7.8e-52 211.1 521 29.6
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.4e-45 190.3 166 56.0
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 1.9e-37 163.3 332 32.8
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 6.0e-36 158.3 149 60.4
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.4e-32 147.1 140 53.6
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 1.5e-31 143.7 145 55.9
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 2.9e-30 139.4 117 61.5
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 7.1e-29 134.8 156 48.1
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 2.1e-28 133.3 295 30.8
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 3.9e-27 129.0 224 37.5
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 3.9e-27 129.0 93 66.7
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 1.5e-26 127.1 99 65.7
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 9.6e-26 124.4 158 48.1
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 1.1e-24 120.9 132 45.5
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 9.0e-24 117.9 194 35.6
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 7.6e-23 114.8 150 41.3
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 3.8e-22 112.5 294 30.3
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 1.6e-20 107.1 128 42.2
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 3.0e-19 102.8 100 57.0
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.4e-16 94.0 86 53.5
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 3.4e-15 89.4 212 30.7
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 3.8e-14 85.9 94 51.1
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 6.5e-14 85.1 99 41.4
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 1.1e-13 84.3 138 39.1
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 5.5e-13 82.0 88 44.3
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 9.3e-13 81.3 79 48.1
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 9.3e-13 81.3 79 48.1
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.6e-12 80.5 79 48.1
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 3.0e-11 76.3 119 35.3
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 3.9e-11 75.9 121 34.7
Actinidia30715 Actinidia chinensis HOM05D004963 ORTHO05D006638 6.7e-11 75.1 124 38.7
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 3.3e-10 72.8 58 56.9
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 5.7e-10 72.0 58 51.7
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 5.7e-10 72.0 72 45.8
Actinidia27518 Actinidia chinensis HOM05D001993 ORTHO05D030912 2.2e-09 70.1 46 76.1
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 3.7e-09 69.3 134 31.3
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 3.7e-09 69.3 51 56.9
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 1.4e-08 67.4 53 56.6
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 6.9e-08 65.1 75 45.3
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 9.1e-08 64.7 117 33.3
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 9.1e-08 64.7 117 33.3


User provided reference genes

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