Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 3.4e-154 548.5 323 100.0
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 7.5e-77 291.6 342 53.5
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 4.6e-74 282.3 336 51.8
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 4.4e-69 265.8 332 53.3
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 4.3e-64 249.2 380 50.5
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 1.4e-62 244.2 360 53.6
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 2.0e-61 240.4 377 47.7
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 1.7e-57 227.3 382 48.2
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 3.0e-57 226.5 381 47.2
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.9e-56 223.8 332 48.2
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 3.3e-56 223.0 381 45.1
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 4.7e-55 219.2 350 46.6
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.5e-53 214.2 346 46.0
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 9.9e-53 211.5 346 45.4
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 4.9e-52 209.1 370 45.7
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 1.4e-51 207.6 380 46.3
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 2.4e-51 206.8 358 50.6
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 2.7e-50 203.4 378 44.7
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 2.3e-49 200.3 318 47.8
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 5.1e-49 199.1 317 46.1
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 3.3e-48 196.4 321 47.4
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 5.6e-48 195.7 332 49.1
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 9.6e-48 194.9 323 46.4
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.1e-47 193.7 362 44.8
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.1e-46 191.4 362 45.0
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.4e-46 191.0 347 39.8
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.8e-46 190.7 369 43.1
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 4.0e-46 189.5 361 44.0
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 5.2e-46 189.1 313 44.1
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 5.2e-46 189.1 313 44.1
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 9.0e-46 188.3 306 44.1
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 8.4e-44 181.8 355 43.1
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 8.4e-44 181.8 306 46.4
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 1.4e-43 181.0 329 48.3
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.9e-43 180.6 306 46.1
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 7.8e-42 175.3 285 53.0
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 4.3e-40 169.5 319 41.4
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 7.3e-40 168.7 287 46.0
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 2.1e-39 167.2 357 40.3
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 2.8e-39 166.8 314 42.4
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 4.8e-39 166.0 252 52.8
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 1.1e-38 164.9 321 40.8
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 1.2e-37 161.4 317 42.3
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 2.0e-37 160.6 346 41.6
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 3.4e-37 159.8 345 45.2
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 4.5e-37 159.5 307 42.3
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 4.5e-37 159.5 195 58.5
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 1.1e-35 154.8 322 37.6
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.1e-35 154.8 314 39.5
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 2.4e-35 153.7 314 39.5
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 4.2e-35 152.9 339 41.0
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 7.1e-35 152.1 321 42.7
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 9.3e-35 151.8 345 40.3
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 2.7e-34 150.2 317 40.1
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 6.0e-34 149.1 308 40.9
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 7.9e-34 148.7 321 43.9
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 2.3e-33 147.1 316 41.5
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 2.3e-33 147.1 315 42.2
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 8.7e-33 145.2 331 43.2
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.5e-32 144.4 329 36.8
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 2.5e-32 143.7 348 37.6
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 7.4e-32 142.1 362 38.7
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 9.6e-32 141.7 361 36.3
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 1.3e-31 141.4 351 37.9
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 1.3e-31 141.4 312 39.7
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 2.1e-31 140.6 350 33.1
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 1.4e-30 137.9 322 40.7
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 5.3e-30 136.0 387 38.0
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 9.0e-30 135.2 283 38.2
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 1.2e-29 134.8 334 42.2
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.5e-29 134.4 260 38.1
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 2.0e-29 134.0 387 38.0
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 2.0e-29 134.0 309 40.8
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 3.4e-29 133.3 374 36.4
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 4.5e-29 132.9 367 37.9
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 9.9e-29 131.7 322 40.7
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 9.9e-29 131.7 357 35.0
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 1.3e-28 131.3 343 32.7
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 2.9e-28 130.2 387 37.7
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.9e-28 130.2 283 36.7
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 1.1e-27 128.3 336 36.9
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 1.4e-27 127.9 318 34.9
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 2.4e-27 127.1 320 37.5
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 5.5e-27 125.9 323 41.2
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 9.3e-27 125.2 294 42.2
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 1.6e-26 124.4 372 33.9
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 2.1e-26 124.0 374 35.6
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 3.5e-26 123.2 324 33.6
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.3e-25 121.3 387 37.0
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 1.8e-25 120.9 377 34.7
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 8.7e-25 118.6 311 34.1
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 1.9e-24 117.5 290 42.4
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 4.3e-24 116.3 359 36.2
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 7.4e-24 115.5 281 33.8
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 7.4e-24 115.5 258 42.2
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 4.8e-23 112.8 320 34.4
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 4.0e-22 109.8 315 37.5
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 4.0e-22 109.8 347 36.3
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 1.2e-21 108.2 284 38.0
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 4.5e-21 106.3 322 37.3
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 8.4e-20 102.1 386 35.8
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 2.5e-19 100.5 308 33.4
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 7.1e-19 99.0 309 35.3
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 7.1e-19 99.0 309 35.3
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 7.1e-19 99.0 309 35.3
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 9.3e-19 98.6 309 31.4
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.2e-18 98.2 213 36.6
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 1.6e-18 97.8 330 31.8
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 7.9e-18 95.5 306 31.4
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 1.8e-17 94.4 306 33.3
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 3.0e-17 93.6 149 49.0
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 3.9e-17 93.2 302 30.8
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 5.7e-16 89.4 315 32.4
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 5.7e-16 89.4 197 37.1
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 1.1e-14 85.1 327 31.8
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 1.4e-14 84.7 307 32.9
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 3.1e-14 83.6 199 34.2
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 3.1e-14 83.6 306 27.8
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 4.1e-14 83.2 309 30.4
CDE02G0512 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 4.1e-14 83.2 356 28.4
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 5.3e-14 82.8 209 36.4
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 9.0e-14 82.0 199 34.7
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 3.4e-13 80.1 336 37.2
CsaV3_2G016540 Cucumis sativus L. HOM05D005407 ORTHO05D006544 7.7e-13 79.0 304 34.5
CDE01G0807 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 1.7e-12 77.8 321 30.5
Ah.02g125610 Amaranthus hybridus HOM05D005407 ORTHO05D006544 2.2e-12 77.4 195 38.5
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 2.2e-12 77.4 313 31.9
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 6.5e-12 75.9 316 28.5
MELO3C020864.2 Cucumis melo HOM05D005407 ORTHO05D006544 6.5e-12 75.9 305 34.1
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 8.5e-12 75.5 306 28.4
Oeu054177.1 Olea europaea HOM05D005407 ORTHO05D006544 8.5e-12 75.5 174 32.8
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 1.9e-11 74.3 314 28.7
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 2.5e-11 73.9 257 31.5
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 4.2e-11 73.2 196 34.2
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 4.2e-11 73.2 196 34.2
Nitab4.5_0000419g0140 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.6e-10 71.2 169 35.5
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 4.6e-10 69.7 311 28.6
Os07g0589600 Oryza sativa ssp. japonica HOM05D013881 ORTHO05D016369 5.1e-09 66.2 269 31.6
unitig_899.g14576 Utricularia gibba HOM05D005407 ORTHO05D006544 1.1e-08 65.1 298 32.9
ClCG02G012410 Citrullus lanatus HOM05D005407 ORTHO05D006544 1.9e-08 64.3 321 33.3
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 1.3e-07 61.6 330 27.6
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.7e-07 61.2 94 40.4
SEGI_05722 Sequoiadendron giganteum HOM05D019616 ORTHO05D023140 1.8e-06 57.8 208 27.9
SEGI_38417 Sequoiadendron giganteum HOM05D019616 ORTHO05D023140 1.8e-06 57.8 209 28.2
Zm00001eb108270 Zea mays HOM05D013881 ORTHO05D016369 6.9e-06 55.8 255 30.2


User provided reference genes

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