Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 3.6e-307 1057.4 519 100.0
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 9.1e-250 866.7 468 91.7
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 3.4e-228 795.0 471 82.4
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.4e-226 787.7 468 81.6
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 5.9e-225 784.3 470 81.1
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 2.0e-220 769.2 468 81.6
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.4e-220 768.5 468 81.4
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 1.3e-219 766.5 468 80.1
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 1.8e-218 762.7 464 81.2
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 7.0e-218 760.8 457 80.5
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.7e-217 758.8 464 80.6
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 5.9e-217 757.7 469 78.9
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.0e-216 756.9 459 80.4
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.7e-216 756.1 463 78.8
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.7e-216 756.1 460 80.0
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 2.9e-216 755.4 458 79.7
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 5.0e-216 754.6 460 80.2
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.6e-216 754.2 460 79.8
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 1.9e-215 752.7 470 77.7
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 4.3e-215 751.5 469 78.7
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 4.3e-215 751.5 469 78.9
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 7.3e-215 750.7 468 79.3
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 7.3e-215 750.7 454 80.2
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 7.3e-215 750.7 464 79.5
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 9.5e-215 750.4 468 78.2
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.2e-214 750.0 460 79.1
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 4.7e-214 748.0 469 79.1
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.2e-214 747.7 460 79.3
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 2.3e-213 745.7 468 75.2
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 3.1e-213 745.3 469 77.4
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 3.1e-213 745.3 458 78.8
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 8.9e-213 743.8 457 78.1
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.0e-212 742.7 457 77.9
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.4e-212 741.9 457 78.1
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 4.4e-212 741.5 466 77.3
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 9.8e-212 740.3 457 77.7
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 2.9e-211 738.8 427 83.1
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.9e-210 736.1 459 77.8
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 1.9e-210 736.1 457 78.3
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 1.2e-209 733.4 462 78.6
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.5e-209 731.9 464 76.3
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 1.7e-208 729.6 459 75.2
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 2.3e-208 729.2 465 77.6
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 3.0e-208 728.8 460 77.8
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 5.0e-208 728.0 462 76.2
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 2.5e-207 725.7 460 77.4
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 4.3e-207 724.9 464 76.7
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 4.7e-206 721.5 461 75.9
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 8.9e-205 717.2 460 77.8
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 5.8e-204 714.5 439 78.6
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 1.3e-203 713.4 469 73.6
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 3.2e-202 708.8 461 74.8
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 5.4e-202 708.0 469 73.1
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 1.6e-201 706.4 468 74.6
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.6e-201 706.4 469 72.9
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.6e-201 706.4 469 72.9
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 2.1e-201 706.1 468 76.7
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 2.1e-201 706.1 420 82.6
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 6.0e-201 704.5 459 74.9
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 3.0e-200 702.2 459 74.5
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 6.6e-200 701.0 430 77.9
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 4.3e-199 698.4 465 75.1
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.2e-198 696.8 434 77.0
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 2.8e-198 695.7 540 65.2
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 9.9e-196 687.2 467 72.2
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 2.2e-195 686.0 457 73.3
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 8.4e-195 684.1 472 71.8
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 7.1e-194 681.0 462 72.3
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.1e-193 679.5 473 71.2
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 5.1e-192 674.9 461 72.9
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 8.6e-192 674.1 426 75.8
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.1e-191 673.7 400 81.0
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.9e-191 672.9 487 69.2
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 1.2e-188 663.7 457 70.5
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 3.4e-188 662.1 457 71.6
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 4.4e-188 661.8 463 70.8
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 2.2e-187 659.4 464 70.7
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 1.1e-186 657.1 464 72.8
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 1.2e-185 653.7 461 72.2
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 4.6e-185 651.7 459 71.2
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 1.7e-184 649.8 461 71.4
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.1e-183 647.1 459 72.1
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 3.3e-183 645.6 459 72.3
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 3.3e-183 645.6 468 71.2
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.3e-182 643.7 474 67.9
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.1e-181 640.6 459 71.0
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 1.1e-181 640.6 459 71.5
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 1.4e-181 640.2 459 71.7
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.8e-181 639.8 459 70.8
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 3.1e-181 639.0 457 71.3
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 1.5e-180 636.7 458 69.7
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 2.0e-180 636.3 459 70.8
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 5.8e-180 634.8 459 69.1
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 7.6e-180 634.4 460 70.9
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 2.9e-179 632.5 458 71.2
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 2.9e-179 632.5 458 71.4
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 8.4e-179 630.9 458 71.0
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 8.4e-179 630.9 458 71.0
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 1.1e-178 630.6 459 70.4
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.9e-178 629.8 459 70.4
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.4e-178 629.4 518 62.4
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 2.1e-177 626.3 402 75.9
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 2.3e-176 622.9 461 67.2
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 6.2e-174 614.8 513 63.2
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 8.4e-171 604.4 490 65.7
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 2.1e-169 599.7 429 71.6
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.3e-168 597.0 408 71.3
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 3.9e-168 595.5 472 64.4
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 2.4e-165 586.3 354 79.4
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 8.4e-163 577.8 355 77.5
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 1.4e-162 577.0 460 65.2
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 3.5e-153 545.8 501 57.9
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.3e-151 538.9 352 75.9
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.7e-150 535.8 464 61.6
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 4.5e-148 528.9 462 60.8
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 3.8e-147 525.8 479 58.0
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 9.4e-146 521.2 459 62.3
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.1e-130 471.1 520 48.1
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 1.1e-127 461.1 554 46.8
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 2.8e-126 456.4 270 78.5
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 1.6e-124 450.7 305 72.1
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.4e-117 426.8 457 53.2
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.7e-107 394.0 317 67.2
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 8.6e-99 365.2 229 79.5
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 1.5e-87 327.8 434 46.1
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-85 321.6 272 65.8
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 1.6e-84 317.8 269 60.6
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 7.1e-77 292.4 363 43.8
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 9.2e-77 292.0 206 71.8
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.1e-76 290.8 271 58.3
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 1.5e-74 284.6 430 38.6
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.8e-71 272.7 266 50.8
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 2.4e-64 250.8 489 37.0
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 5.8e-63 246.1 458 37.1
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.2e-60 238.4 464 35.8
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 2.1e-57 227.6 207 56.5
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.8e-57 227.3 181 63.5
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.7e-54 218.0 179 62.6
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 2.9e-54 217.2 198 56.1
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 9.3e-53 212.2 295 45.4
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.7e-52 210.7 111 86.5
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.0e-51 207.2 111 84.7
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.1e-50 205.3 111 83.8
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 4.3e-42 176.8 118 76.3
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 4.3e-42 176.8 124 68.5
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.7e-42 176.4 111 74.8
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 1.4e-37 161.8 189 51.3
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 6.1e-36 156.4 122 61.5
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 7.4e-34 149.4 96 80.2
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 1.3e-33 148.7 91 74.7
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 1.2e-31 142.1 116 61.2
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.3e-27 127.9 306 31.7
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 6.7e-27 126.3 67 91.0
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 1.5e-23 115.2 122 55.7
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 2.6e-23 114.4 75 77.3
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 9.1e-16 89.4 58 74.1
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 2.7e-12 77.8 75 58.7
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 4.8e-09 67.0 57 57.9
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 4.8e-09 67.0 44 72.7
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 1.1e-08 65.9 46 69.6
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.1e-08 65.9 44 70.5
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 1.8e-08 65.1 45 68.9


User provided reference genes

Program Settings