Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 4.4e-192 674.5 347 100.0
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.7e-133 479.2 352 73.0
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.6e-107 392.9 361 61.5
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.3e-95 354.0 356 56.7
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 8.9e-92 341.3 349 55.9
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 3.0e-87 326.2 378 53.4
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 2.3e-84 316.6 409 50.4
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 2.3e-84 316.6 378 51.1
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 7.5e-83 311.6 385 49.1
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 4.9e-82 308.9 383 49.9
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.1e-81 307.8 352 51.4
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 4.1e-81 305.8 399 48.1
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 4.1e-81 305.8 380 47.6
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 9.2e-81 304.7 371 49.1
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 2.7e-80 303.1 354 51.1
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 1.0e-79 301.2 386 48.7
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 3.9e-79 299.3 383 49.1
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.1e-78 297.7 345 49.9
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 7.3e-78 295.0 383 47.5
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 1.1e-76 291.2 363 49.0
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.4e-76 290.8 387 47.8
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.8e-76 290.4 400 47.0
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 8.9e-76 288.1 349 47.9
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 8.9e-76 288.1 349 47.9
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.4e-75 286.2 379 47.5
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.1e-73 281.2 363 47.7
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 1.9e-73 280.4 363 47.7
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.4e-73 280.0 385 46.8
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 3.2e-73 279.6 390 45.6
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 7.1e-73 278.5 363 47.7
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 9.2e-73 278.1 364 48.1
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 1.2e-72 277.7 370 46.2
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 4.6e-72 275.8 365 47.4
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 7.8e-72 275.0 385 46.2
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 7.8e-72 275.0 371 47.2
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.3e-71 274.2 361 49.9
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.3e-71 274.2 344 48.5
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.3e-71 274.2 369 47.7
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 3.0e-71 273.1 382 46.1
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 5.1e-71 272.3 393 46.1
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 8.6e-71 271.6 361 49.6
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 3.3e-70 269.6 361 47.6
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 4.3e-70 269.2 357 46.5
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.1e-69 266.9 348 49.1
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 3.6e-69 266.2 365 48.5
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 2.4e-68 263.5 366 48.1
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.1e-68 263.1 384 44.0
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.3e-66 257.7 360 46.4
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 3.8e-66 256.1 357 45.9
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.8e-66 256.1 401 43.1
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 4.2e-65 252.7 360 45.0
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 9.3e-65 251.5 362 45.6
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 9.3e-65 251.5 359 46.0
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 7.3e-62 241.9 363 44.9
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.6e-61 239.6 353 45.3
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 1.1e-60 238.0 341 44.0
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 2.4e-60 236.9 418 39.7
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 3.1e-60 236.5 304 48.7
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 3.1e-60 236.5 304 48.7
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 6.9e-60 235.3 371 44.5
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.6e-59 233.4 346 41.3
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 7.6e-59 231.9 352 42.6
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 6.4e-58 228.8 379 43.3
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 1.1e-57 228.0 357 42.6
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.1e-57 228.0 409 41.6
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 1.4e-57 227.6 432 39.4
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.2e-56 224.6 353 43.3
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.6e-56 224.2 443 39.1
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 2.1e-56 223.8 352 42.0
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 1.3e-55 221.1 368 43.5
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 2.3e-55 220.3 345 42.3
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 3.0e-55 219.9 344 43.0
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 4.8e-53 212.6 372 40.9
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.1e-52 211.5 345 42.0
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.1e-52 209.9 355 39.2
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 4.0e-52 209.5 329 42.6
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 3.4e-51 206.5 355 40.0
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 7.6e-51 205.3 354 43.2
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 6.4e-50 202.2 350 39.4
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.1e-49 201.4 408 36.8
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 2.4e-49 200.3 396 39.1
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 4.6e-48 196.1 343 39.1
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 3.9e-47 193.0 345 42.0
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 9.6e-46 188.3 350 39.7
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.6e-45 187.6 345 39.1
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.6e-45 187.6 349 41.0
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.1e-44 184.9 349 39.5
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 5.3e-44 182.6 350 37.4
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.2e-43 181.4 349 37.8
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 1.5e-43 181.0 353 38.2
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.5e-43 181.0 379 35.1
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 2.0e-43 180.6 349 37.8
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 4.9e-42 176.0 356 38.8
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 6.5e-42 175.6 132 68.2
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 8.4e-42 175.3 346 36.4
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.9e-41 174.1 349 37.0
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 7.1e-41 172.2 350 36.9
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.7e-40 170.2 344 35.5
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.3e-39 167.9 343 35.6
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.5e-38 164.5 339 36.0
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.9e-38 164.1 385 36.6
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.5e-38 163.7 363 36.6
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.1e-37 160.6 356 35.1
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 6.2e-37 159.1 342 36.5
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.1e-36 158.3 345 34.5
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 4.1e-36 156.4 334 35.3
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 1.2e-35 154.8 334 35.0
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.4e-35 153.3 382 35.3
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 5.8e-35 152.5 348 36.2
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.0e-34 151.8 349 33.8
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.0e-34 151.8 349 33.8
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.0e-34 151.8 349 33.8
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 1.0e-34 151.8 364 36.8
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.8e-34 149.8 348 35.6
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 5.0e-34 149.4 343 34.7
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.1e-33 148.3 348 36.5
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.1e-33 148.3 387 31.8
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 3.2e-33 146.7 354 35.6
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.2e-32 144.8 356 36.2
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.2e-32 144.8 362 35.9
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 3.5e-32 143.3 347 32.0
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 6.1e-32 142.5 111 64.9
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 2.3e-31 140.6 475 29.9
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 3.0e-31 140.2 345 31.9
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.7e-31 139.0 349 35.2
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 6.7e-31 139.0 135 55.6
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 2.5e-30 137.1 351 35.0
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 2.5e-30 137.1 351 35.0
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 7.4e-30 135.6 362 31.2
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.2e-29 134.0 422 30.3
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.4e-28 130.6 367 32.2
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.2e-27 128.3 105 61.0
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 4.5e-27 126.3 347 34.0
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 2.2e-26 124.0 174 47.1
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 2.2e-26 124.0 174 47.1
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 3.8e-26 123.2 162 45.7
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 3.8e-26 123.2 143 49.0
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 3.8e-26 123.2 157 49.7
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 3.8e-26 123.2 143 49.0
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.4e-25 121.3 104 63.5
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.4e-25 121.3 104 63.5
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.4e-25 121.3 370 31.9
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 1.4e-25 121.3 107 62.6
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 1.9e-25 120.9 170 45.3
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 7.9e-24 115.5 105 51.4
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 3.9e-23 113.2 152 47.4
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 5.1e-23 112.8 171 42.1
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 5.1e-23 112.8 171 42.1
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 5.1e-23 112.8 171 42.1
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.1e-23 112.8 73 78.1
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 8.8e-23 112.1 125 48.8
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.3e-21 108.2 137 48.9
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 2.2e-21 107.5 106 55.7
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 6.3e-21 105.9 282 32.6
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 1.8e-20 104.4 184 41.3
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.0e-19 100.9 73 67.1
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 3.4e-19 100.1 155 45.2
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 3.4e-19 100.1 133 45.9
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 5.9e-19 99.4 141 44.7
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 2.2e-18 97.4 352 28.1
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 1.1e-17 95.1 150 36.7
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 2.5e-17 94.0 112 49.1
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 7.2e-17 92.4 179 39.1
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 7.9e-16 89.0 109 43.1
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 1.4e-15 88.2 115 44.3
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 1.4e-15 88.2 115 44.3
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 7.4e-14 82.4 149 36.2
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 1.3e-13 81.6 84 42.9
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 3.1e-12 77.0 197 32.5
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.0e-10 72.0 247 29.6
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 5.0e-10 69.7 43 79.1
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 2.5e-09 67.4 103 37.9
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 5.5e-09 66.2 109 36.7
Sabra16G0293500 Salix brachista HOM05D003874 ORTHO05D004545 2.1e-08 64.3 91 42.9
ATR1089G143 Amborella trichopoda HOM05D003874 ORTHO05D004545 2.3e-07 60.8 118 35.6
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.5e-06 58.2 109 35.8


User provided reference genes

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