Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1549 Trochodendron aralioides HOM05D006111 ORTHO05D414729 3.1e-66 255.0 129 100.0
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 1.1e-10 70.5 41 82.9
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 7.0e-10 67.8 41 75.6
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 7.0e-10 67.8 41 75.6
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 7.0e-10 67.8 41 75.6
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 7.0e-10 67.8 41 75.6
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 9.2e-10 67.4 41 73.2
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 1.2e-09 67.0 41 78.0
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 1.2e-09 67.0 41 78.0
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 1.2e-09 67.0 41 78.0
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 1.2e-09 67.0 41 78.0
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.2e-09 67.0 41 78.0
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.2e-09 67.0 41 78.0
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 1.6e-09 66.6 41 78.0
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 1.6e-09 66.6 43 72.1
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 1.6e-09 66.6 41 75.6
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 2.0e-09 66.2 41 78.0
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 3.5e-09 65.5 41 75.6
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 3.5e-09 65.5 43 74.4
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 3.5e-09 65.5 41 75.6
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 3.5e-09 65.5 41 75.6
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 3.5e-09 65.5 41 75.6
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 4.6e-09 65.1 41 75.6
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 6.0e-09 64.7 41 78.0
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 6.0e-09 64.7 41 73.2
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 6.0e-09 64.7 41 75.6
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 7.8e-09 64.3 43 74.4
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 7.8e-09 64.3 41 75.6
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 1.0e-08 63.9 43 74.4
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 1.0e-08 63.9 43 74.4
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 1.0e-08 63.9 43 74.4
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 1.0e-08 63.9 43 74.4
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 1.0e-08 63.9 41 73.2
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 1.3e-08 63.5 41 68.3
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 1.3e-08 63.5 41 70.7
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 1.7e-08 63.2 41 73.2
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 1.7e-08 63.2 41 75.6
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 1.7e-08 63.2 41 75.6
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 1.7e-08 63.2 41 70.7
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 1.7e-08 63.2 41 75.6
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 1.7e-08 63.2 41 73.2
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 1.7e-08 63.2 41 73.2
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 1.7e-08 63.2 41 75.6
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 1.7e-08 63.2 41 75.6
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 2.3e-08 62.8 43 72.1
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 2.3e-08 62.8 43 72.1
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 2.3e-08 62.8 43 72.1
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 2.3e-08 62.8 43 72.1
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 2.3e-08 62.8 43 72.1
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 2.3e-08 62.8 43 72.1
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 2.3e-08 62.8 41 73.2
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 3.0e-08 62.4 41 70.7
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 3.9e-08 62.0 43 67.4
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 3.9e-08 62.0 43 67.4
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 5.0e-08 61.6 41 73.2
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 5.0e-08 61.6 38 78.9
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 5.0e-08 61.6 41 70.7
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 5.0e-08 61.6 41 70.7
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 6.6e-08 61.2 41 65.9
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 6.6e-08 61.2 41 73.2
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 6.6e-08 61.2 41 73.2
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 6.6e-08 61.2 41 70.7
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 8.6e-08 60.8 41 73.2
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 8.6e-08 60.8 41 68.3
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 8.6e-08 60.8 41 68.3
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 8.6e-08 60.8 41 68.3
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 8.6e-08 60.8 41 68.3
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 8.6e-08 60.8 41 68.3
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 8.6e-08 60.8 41 73.2
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 8.6e-08 60.8 41 70.7
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 8.6e-08 60.8 41 70.7
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 1.1e-07 60.5 41 68.3
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 1.5e-07 60.1 41 65.9
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 1.5e-07 60.1 41 63.4
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 1.5e-07 60.1 41 70.7
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 1.5e-07 60.1 41 68.3
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 1.9e-07 59.7 39 69.2
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 1.9e-07 59.7 41 68.3
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 2.5e-07 59.3 41 68.3
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 2.5e-07 59.3 41 68.3
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 2.5e-07 59.3 41 68.3
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 2.5e-07 59.3 41 70.7
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 2.5e-07 59.3 41 68.3
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 2.5e-07 59.3 41 70.7
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 2.5e-07 59.3 38 73.7
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 3.3e-07 58.9 41 68.3
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 5.6e-07 58.2 41 68.3
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 9.5e-07 57.4 41 70.7
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 9.5e-07 57.4 38 71.1
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 9.5e-07 57.4 41 65.9
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 1.6e-06 56.6 41 70.7
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 2.1e-06 56.2 41 65.9
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 2.8e-06 55.8 41 63.4
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 4.7e-06 55.1 41 65.9
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 6.2e-06 54.7 41 61.0
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 6.2e-06 54.7 41 65.9
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 6.2e-06 54.7 41 65.9
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 6.2e-06 54.7 118 33.9


User provided reference genes

Program Settings