Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 1.3e-180 636.3 327 100.0
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 3.3e-120 435.6 368 65.8
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 2.6e-117 426.0 369 63.7
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 2.4e-115 419.5 365 64.7
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 2.0e-114 416.4 356 64.3
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 1.3e-113 413.7 367 63.2
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 1.1e-112 410.6 355 63.4
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 4.3e-112 408.7 366 62.6
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 7.3e-112 407.9 360 61.1
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 2.1e-111 406.4 355 63.1
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 2.8e-111 406.0 360 61.1
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 4.7e-111 405.2 361 63.2
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 1.8e-110 403.3 372 63.2
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 8.9e-110 401.0 318 68.2
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 1.3e-108 397.1 360 61.4
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 2.9e-108 396.0 371 59.8
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 3.7e-108 395.6 371 60.1
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 8.3e-108 394.4 361 61.8
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 1.1e-107 394.0 360 60.6
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 1.1e-107 394.0 314 67.8
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 1.9e-107 393.3 359 60.2
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 2.4e-107 392.9 360 61.9
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 4.1e-107 392.1 341 62.5
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 1.2e-106 390.6 366 61.5
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 2.7e-106 389.4 328 65.2
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 4.6e-106 388.7 365 61.9
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 1.3e-105 387.1 331 64.7
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 4.3e-104 382.1 359 59.9
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 4.3e-104 382.1 334 62.9
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 4.3e-104 382.1 367 58.6
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 5.6e-104 381.7 324 64.8
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 1.2e-103 380.6 307 67.8
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 4.7e-103 378.6 369 58.8
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 8.1e-103 377.9 307 67.1
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 2.3e-102 376.3 363 58.1
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 1.5e-101 373.6 291 67.4
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 2.6e-101 372.9 364 58.0
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 5.8e-101 371.7 359 60.7
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 5.8e-101 371.7 356 58.4
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 3.7e-100 369.0 321 62.0
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 2.4e-99 366.3 290 66.9
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 4.1e-99 365.5 329 60.8
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 5.4e-99 365.2 294 67.3
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 9.2e-99 364.4 379 55.9
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 1.2e-98 364.0 316 61.7
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 1.2e-98 364.0 302 64.6
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 2.1e-98 363.2 318 60.4
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 4.6e-98 362.1 332 59.6
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 4.6e-98 362.1 329 61.4
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 6.0e-98 361.7 331 59.8
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 6.0e-98 361.7 356 57.0
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 1.0e-97 360.9 361 56.2
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 1.0e-97 360.9 369 57.5
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 1.3e-97 360.5 280 67.1
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 1.3e-97 360.5 290 66.6
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 5.1e-97 358.6 315 60.6
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 5.1e-97 358.6 315 60.6
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 6.6e-97 358.2 315 61.0
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 6.6e-97 358.2 363 56.2
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 8.6e-97 357.8 309 61.5
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 8.6e-97 357.8 309 61.5
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 8.6e-97 357.8 328 60.1
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.1e-96 357.5 395 53.7
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 1.1e-96 357.5 362 57.5
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 1.1e-96 357.5 362 56.1
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 1.1e-96 357.5 364 56.3
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 1.9e-96 356.7 332 58.7
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 4.3e-96 355.5 314 62.7
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 4.3e-96 355.5 318 60.1
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 1.2e-95 354.0 335 57.6
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 2.8e-95 352.8 359 55.2
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 1.1e-94 350.9 353 56.7
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 1.4e-94 350.5 356 56.7
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 1.2e-93 347.4 366 54.4
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 2.6e-93 346.3 376 55.9
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 9.9e-93 344.4 392 51.3
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 7.1e-91 338.2 299 60.9
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 4.6e-90 335.5 312 56.7
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 7.8e-90 334.7 402 52.2
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 3.9e-89 332.4 291 62.5
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 5.1e-89 332.0 257 69.3
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 1.5e-88 330.5 349 56.2
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 9.6e-88 327.8 318 59.1
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 9.6e-88 327.8 332 54.8
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 2.0e-85 320.1 293 59.7
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 6.0e-82 308.5 262 61.1
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 1.7e-81 307.0 273 61.5
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 3.4e-77 292.7 546 37.5
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 7.9e-74 281.6 473 40.8
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 1.8e-73 280.4 281 58.7
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 6.2e-71 271.9 225 62.2
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 1.1e-70 271.2 456 39.5
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 4.9e-68 262.3 287 50.5
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 6.5e-68 261.9 277 51.3
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 6.5e-68 261.9 290 50.3
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 3.2e-67 259.6 287 51.2
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 3.5e-66 256.1 235 59.1
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 3.0e-65 253.1 383 46.0
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 1.1e-64 251.1 253 57.3
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 1.1e-62 244.6 280 47.9
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 3.4e-61 239.6 278 52.9
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 6.9e-54 215.3 182 62.1
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 7.9e-42 175.3 167 61.7
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 7.4e-40 168.7 298 37.6
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 8.2e-39 165.2 356 37.4
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 7.0e-38 162.2 145 58.6
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.5e-37 161.0 139 62.6
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 7.7e-37 158.7 191 46.6
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 3.6e-34 149.8 311 32.2
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 5.7e-32 142.5 101 72.3
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 1.7e-31 141.0 142 53.5
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 5.3e-30 136.0 193 40.9
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 3.5e-29 133.3 96 67.7
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 7.7e-29 132.1 120 58.3
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 1.6e-26 124.4 157 49.7
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 1.4e-25 121.3 90 65.6
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 1.4e-25 121.3 73 79.5
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 3.0e-25 120.2 71 80.3
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 2.8e-23 113.6 83 68.7
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 2.7e-18 97.1 77 59.7
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 8.0e-18 95.5 95 55.8
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 3.4e-16 90.1 64 71.9
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 1.4e-14 84.7 105 49.5
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.5e-13 79.7 64 67.2
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.5e-13 79.7 64 67.2
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.5e-13 79.7 64 67.2
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.5e-13 79.7 64 67.2
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.5e-13 79.7 64 67.2
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.5e-13 79.7 64 67.2
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.9e-13 79.3 64 67.2
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.9e-13 79.3 64 67.2
Psat2g069600 Pisum sativum HOM05D000263 ORTHO05D009363 7.0e-06 55.8 55 56.4


User provided reference genes

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