Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1538 Trochodendron aralioides HOM05D006984 ORTHO05D008773 2.2e-137 492.3 247 100.0
Dinv13757 Davidia involucrata HOM05D006984 ORTHO05D008773 5.9e-90 334.7 254 68.1
Nn6g31626 Nelumbo nucifera HOM05D006984 ORTHO05D008773 9.4e-88 327.4 255 68.6
MBI04_g31208_MAGBIO Magnolia biondii HOM05D006984 ORTHO05D008773 7.0e-83 311.2 225 68.0
QL02p015743 Quercus lobata HOM05D006984 ORTHO05D008773 7.7e-82 307.8 225 64.4
Atru.chr13.60 Acer truncatum HOM05D006984 ORTHO05D008773 2.3e-81 306.2 257 61.5
CiPaw.07G133500 Carya illinoinensis HOM05D006984 ORTHO05D008773 3.8e-81 305.4 212 68.9
Cpa.g.sc26.14 Carica papaya HOM05D006984 ORTHO05D008773 1.1e-80 303.9 260 60.8
Cfa014138 Carpinus fangiana HOM05D006984 ORTHO05D008773 2.3e-78 296.2 212 69.3
GSVIVG01013427001 Vitis vinifera HOM05D006984 ORTHO05D008773 1.2e-77 293.9 253 60.5
Ciclev10001894m.g Citrus clementina HOM05D006984 ORTHO05D008773 3.4e-77 292.4 250 60.8
CSS0020436 Camellia sinensis var. sinensis HOM05D006984 ORTHO05D008773 4.4e-77 292.0 218 65.6
Oeu035863.2 Olea europaea HOM05D006984 ORTHO05D008773 2.9e-76 289.3 252 58.3
CAN.G208.41 Capsicum annuum HOM05D006984 ORTHO05D008773 1.8e-75 286.6 235 61.3
Lsat_1_v5_gn_9_48361 Lactuca sativa HOM05D006984 ORTHO05D008773 1.8e-75 286.6 265 55.8
ECA232G4329 Erigeron canadensis HOM05D006984 ORTHO05D008773 1.2e-74 283.9 254 57.1
AUR62035170 Chenopodium quinoa HOM05D006984 ORTHO05D008773 4.6e-74 282.0 222 62.6
Haze_22863 Corylus avellana HOM05D006984 ORTHO05D008773 4.6e-74 282.0 284 54.6
Solyc12g094720.3 Solanum lycopersicum HOM05D006984 ORTHO05D008773 4.6e-74 282.0 222 62.2
Actinidia17077 Actinidia chinensis HOM05D006984 ORTHO05D008773 5.9e-74 281.6 217 63.6
Prupe.5G005500 Prunus persica HOM05D006984 ORTHO05D008773 1.3e-73 280.4 251 59.0
PGSC0003DMG400029399 Solanum tuberosum HOM05D006984 ORTHO05D008773 1.3e-73 280.4 226 60.6
Eucgr.F01822 Eucalyptus grandis HOM05D006984 ORTHO05D008773 1.7e-73 280.0 224 62.5
Peaxi162Scf00064g01321 Petunia axillaris HOM05D006984 ORTHO05D008773 1.7e-73 280.0 227 62.6
HanXRQChr09g0241901 Helianthus annuus HOM05D006984 ORTHO05D008773 2.3e-73 279.6 252 56.7
Sabra05G0198700 Salix brachista HOM05D006984 ORTHO05D008773 2.3e-73 279.6 226 62.8
Sopen12g031620 Solanum pennellii HOM05D006984 ORTHO05D008773 2.3e-73 279.6 219 62.1
VMungo1309G1928 Vigna mungo HOM05D006984 ORTHO05D008773 2.9e-73 279.3 197 67.0
AUR62024096 Chenopodium quinoa HOM05D006984 ORTHO05D008773 3.9e-73 278.9 199 66.3
Cc10_g00260 Coffea canephora HOM05D006984 ORTHO05D008773 1.1e-72 277.3 178 74.2
MD16G1283100 Malus domestica HOM05D006984 ORTHO05D008773 1.1e-72 277.3 260 56.5
CANSAT25G0748 Cannabis sativa HOM05D006984 ORTHO05D008773 3.3e-72 275.8 241 60.6
Lj3P797T41 Lonicera japonica HOM05D006984 ORTHO05D008773 3.3e-72 275.8 168 76.2
MSTRG.24516 Avicennia marina HOM05D006984 ORTHO05D008773 7.3e-72 274.6 255 56.1
Glyma.04G014500 Glycine max HOM05D006984 ORTHO05D008773 1.6e-71 273.5 202 65.3
TWI56G0056 Tripterygium wilfordii HOM05D006984 ORTHO05D008773 1.6e-71 273.5 221 60.6
Glyma.06G014500 Glycine max HOM05D006984 ORTHO05D008773 3.6e-71 272.3 205 64.9
Lj1g0018204 Lotus japonicus HOM05D006984 ORTHO05D008773 8.0e-71 271.2 203 64.0
Manes.05G127800 Manihot esculenta HOM05D006984 ORTHO05D008773 8.0e-71 271.2 231 60.6
Lj4A811G120 Lonicera japonica HOM05D006984 ORTHO05D008773 1.0e-70 270.8 163 77.3
vmacro21767 Vaccinium macrocarpon HOM05D006984 ORTHO05D008773 1.4e-70 270.4 228 60.1
FvH4_5g26100 Fragaria vesca HOM05D006984 ORTHO05D008773 1.8e-70 270.0 258 57.8
Phvul.009G008400 Phaseolus vulgaris HOM05D006984 ORTHO05D008773 1.8e-70 270.0 197 65.0
Duzib116G0393 Durio zibethinus HOM05D006984 ORTHO05D008773 2.3e-70 269.6 167 74.9
FAN18G2056 Fragaria x ananassa HOM05D006984 ORTHO05D008773 2.3e-70 269.6 252 58.3
RcHm_v2.0_Chr7g0216691 Rosa chinensis HOM05D006984 ORTHO05D008773 5.2e-70 268.5 254 56.3
THA.LOC104813736 Tarenaya hassleriana HOM05D006984 ORTHO05D008773 5.2e-70 268.5 256 54.3
Thecc.08G099800 Theobroma cacao HOM05D006984 ORTHO05D008773 5.2e-70 268.5 211 65.4
Potri.005G256600 Populus trichocarpa HOM05D006984 ORTHO05D008773 2.0e-69 266.5 176 72.7
EL10Ac1g01871 Beta vulgaris HOM05D006984 ORTHO05D008773 2.6e-69 266.2 259 53.3
MELO3C026518.2 Cucumis melo HOM05D006984 ORTHO05D008773 1.7e-68 263.5 197 64.5
CsaV3_6G035930 Cucumis sativus L. HOM05D006984 ORTHO05D008773 3.7e-68 262.3 197 63.5
Hma1.2p1_0489F.1_g164090 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 3.7e-68 262.3 172 72.1
AT1G76450 Arabidopsis thaliana HOM05D006984 ORTHO05D008773 4.9e-68 261.9 207 60.4
Aqoxy6G02992 Aquilegia oxysepala HOM05D006984 ORTHO05D008773 6.4e-68 261.5 263 51.7
Aa31LG4G6540 Aethionema arabicum HOM05D006984 ORTHO05D008773 8.3e-68 261.2 247 53.0
AL2G36590 Arabidopsis lyrata HOM05D006984 ORTHO05D008773 1.1e-67 260.8 207 60.4
CDE05G2674 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 1.1e-67 260.8 219 58.0
Ca_15385_v3 Cicer arietinum L. HOM05D006984 ORTHO05D008773 1.1e-67 260.8 180 67.2
TPR.G38185 Trifolium pratense HOM05D006984 ORTHO05D008773 1.4e-67 260.4 199 60.8
Sc15g0004070 Simmondsia chinensis HOM05D006984 ORTHO05D008773 1.9e-67 260.0 166 71.1
Migut.N02987 Erythranthe guttata HOM05D006984 ORTHO05D008773 3.2e-67 259.2 226 59.3
PSO541G1597 Papaver somniferum HOM05D006984 ORTHO05D008773 5.4e-67 258.5 230 53.5
Psat5g008560 Pisum sativum HOM05D006984 ORTHO05D008773 9.2e-67 257.7 208 57.7
Medtr3g116110 Medicago truncatula HOM05D006984 ORTHO05D008773 2.0e-66 256.5 202 60.4
Sp5g31620 Schrenkiella parvula HOM05D006984 ORTHO05D008773 2.0e-66 256.5 207 58.9
Nitab4.5_0000407g0010 Nicotiana tabacum HOM05D006984 ORTHO05D008773 7.8e-66 254.6 170 68.8
CARHR070010 Cardamine hirsuta HOM05D006984 ORTHO05D008773 1.3e-65 253.8 250 52.4
BcaC08g47152 Brassica carinata HOM05D006984 ORTHO05D008773 3.0e-65 252.7 200 62.0
Carub.0002s2337 Capsella rubella HOM05D006984 ORTHO05D008773 6.6e-65 251.5 208 57.2
Hund01834 Selenicereus undatus HOM05D006984 ORTHO05D008773 8.6e-65 251.1 167 67.1
BcaC08g47243 Brassica carinata HOM05D006984 ORTHO05D008773 1.1e-64 250.8 201 60.7
Gohir.D01G180900 Gossypium hirsutum HOM05D006984 ORTHO05D008773 2.5e-64 249.6 182 66.5
Gorai.002G221600 Gossypium raimondii HOM05D006984 ORTHO05D008773 2.5e-64 249.6 182 66.5
arahy.Tifrunner.gnm1.ann1.H7AW2T Arachis hypogaea HOM05D006984 ORTHO05D008773 3.3e-64 249.2 208 58.7
FAN13G1472 Fragaria x ananassa HOM05D006984 ORTHO05D008773 3.3e-64 249.2 289 49.8
BraA07t31741Z Brassica rapa HOM05D006984 ORTHO05D008773 5.6e-64 248.4 201 60.7
Gohir.A01G188600 Gossypium hirsutum HOM05D006984 ORTHO05D008773 5.6e-64 248.4 182 65.9
Os08g0512500 Oryza sativa ssp. japonica HOM05D006984 ORTHO05D008773 7.3e-64 248.1 195 60.0
arahy.Tifrunner.gnm1.ann1.QT2TB5 Arachis hypogaea HOM05D006984 ORTHO05D008773 9.5e-64 247.7 209 57.9
Sed0024892 Sechium edule HOM05D006984 ORTHO05D008773 9.5e-64 247.7 187 60.4
CDE05G0055 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 1.2e-63 247.3 167 67.1
BolC6t40095H Brassica oleracea HOM05D006984 ORTHO05D008773 1.6e-63 246.9 201 59.7
Lalb_Chr23g0265511 Lupinus albus HOM05D006984 ORTHO05D008773 4.7e-63 245.4 201 60.2
ATR0001G027 Amborella trichopoda HOM05D006984 ORTHO05D008773 1.2e-61 240.7 222 55.9
A07p42120 Brassica napus HOM05D006984 ORTHO05D008773 1.5e-61 240.4 198 59.1
unitig_22.g5726 Utricularia gibba HOM05D006984 ORTHO05D008773 2.6e-61 239.6 191 62.3
SGA_v2.0_scaffold220G42646 Striga asiatica HOM05D006984 ORTHO05D008773 3.4e-61 239.2 154 70.1
C06p50690 Brassica napus HOM05D006984 ORTHO05D008773 5.8e-61 238.4 192 59.9
COL.COLO4_12298 Corchorus olitorius HOM05D006984 ORTHO05D008773 5.8e-61 238.4 172 65.7
FAN04G1410 Fragaria x ananassa HOM05D006984 ORTHO05D008773 1.7e-60 236.9 264 51.5
PGR083G2821 Punica granatum HOM05D006984 ORTHO05D008773 2.2e-60 236.5 201 60.2
Thhalv10019042m.g Eutrema salsugineum HOM05D006984 ORTHO05D008773 8.3e-60 234.6 233 53.2
FAN08G1099 Fragaria x ananassa HOM05D006984 ORTHO05D008773 3.5e-58 229.2 185 63.8
ClCG08G009180 Citrullus lanatus HOM05D006984 ORTHO05D008773 1.3e-57 227.3 193 59.1
Rhsim06G0003200 Rhododendron simsii HOM05D006984 ORTHO05D008773 2.3e-57 226.5 345 40.9
Hma1.2p1_0489F.1_g164100 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 2.5e-56 223.0 120 86.7
Mapoly0008s0218 Marchantia polymorpha HOM05D006984 ORTHO05D008773 3.7e-52 209.1 197 50.8
Nitab4.5_0003423g0020 Nicotiana tabacum HOM05D006984 ORTHO05D008773 3.2e-51 206.1 219 51.1
Pp3c4_15070 Physcomitrium patens HOM05D006984 ORTHO05D008773 9.2e-51 204.5 212 47.2
AagrBONN_evm.TU.Sc2ySwM_117.1863 Anthoceros agrestis HOM05D006984 ORTHO05D008773 7.1e-43 178.3 207 42.0
Ah.11g041950 Amaranthus hybridus HOM05D006984 ORTHO05D008773 6.2e-39 165.2 134 63.4
SMO245G0004 Selaginella moellendorffii HOM05D006984 ORTHO05D008773 5.3e-38 162.2 162 43.8
CBR_g51937 Chara braunii HOM05D006984 ORTHO05D008773 1.9e-35 153.7 159 47.2
Zm00001eb035340 Zea mays HOM05D006984 ORTHO05D008773 4.2e-35 152.5 148 55.4
PGSC0003DMG400008742 Solanum tuberosum HOM05D006984 ORTHO05D008773 5.5e-27 125.6 105 60.0
PGSC0003DMG400021762 Solanum tuberosum HOM05D006984 ORTHO05D008773 8.7e-25 118.2 87 66.7
Medtr6g034285 Medicago truncatula HOM05D000394 ORTHO05D008773 1.0e-20 104.8 66 65.2
Cre10.g446350 Chlamydomonas reinhardtii HOM05D006984 ORTHO05D008773 6.5e-20 102.1 236 31.4
Sopen12g026780 Solanum pennellii HOM05D000004 ORTHO05D000002 2.5e-19 100.1 77 62.3
MCO13G452 Micromonas commoda HOM05D006984 ORTHO05D008773 4.2e-19 99.4 207 30.0
PRCOL_00004638 Prasinoderma coloniale HOM05D006984 ORTHO05D008773 3.5e-18 96.3 163 33.7
HPP92_015474 Vanilla planifolia HOM05D006984 ORTHO05D008773 1.8e-09 67.4 51 54.9
Psat7g136640 Pisum sativum HOM05D006984 ORTHO05D008773 3.0e-09 66.6 104 35.6
Psat6g152440 Pisum sativum HOM05D006984 ORTHO05D000789 1.1e-06 58.2 38 63.2
Psat6g152480 Pisum sativum HOM05D006984 ORTHO05D008773 1.8e-06 57.4 43 60.5


User provided reference genes

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