Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1502 Trochodendron aralioides HOM05D004570 ORTHO05D005494 4.3e-47 191.0 101 100.0
Nn021s41531 Nelumbo nucifera HOM05D004570 ORTHO05D005494 6.9e-45 183.7 100 96.0
Nn3g19985 Nelumbo nucifera HOM05D004570 ORTHO05D005494 6.9e-45 183.7 100 96.0
PSO548G0082 Papaver somniferum HOM05D004570 ORTHO05D005494 9.0e-45 183.3 100 96.0
DCAR_032506 Daucus carota HOM05D004570 ORTHO05D005494 2.1e-41 172.2 100 92.0
CAN.G1148.10 Capsicum annuum HOM05D004570 ORTHO05D005494 4.6e-41 171.0 100 91.0
CAN.G1314.4 Capsicum annuum HOM05D004570 ORTHO05D005494 4.6e-41 171.0 100 91.0
CAN.G2018.14 Capsicum annuum HOM05D004570 ORTHO05D005494 4.6e-41 171.0 100 91.0
CAN.G2018.6 Capsicum annuum HOM05D004570 ORTHO05D005494 4.6e-41 171.0 100 91.0
CAN.G3365.4 Capsicum annuum HOM05D004570 ORTHO05D005494 4.6e-41 171.0 100 91.0
CAN.G438.84 Capsicum annuum HOM05D004570 ORTHO05D005494 4.6e-41 171.0 100 91.0
Solyc00g500022.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 4.6e-41 171.0 100 91.0
Sopen07g012410 Solanum pennellii HOM05D004570 ORTHO05D005494 4.6e-41 171.0 100 91.0
PGSC0003DMG400044817 Solanum tuberosum HOM05D004570 ORTHO05D005494 4.6e-41 171.0 100 91.0
PGSC0003DMG400045454 Solanum tuberosum HOM05D004570 ORTHO05D005494 4.6e-41 171.0 100 91.0
PGSC0003DMG401022617 Solanum tuberosum HOM05D004570 ORTHO05D005494 4.6e-41 171.0 100 91.0
Gohir.A12G229466 Gossypium hirsutum HOM05D004570 ORTHO05D005494 6.0e-41 170.6 100 92.0
Gorai.010G129700 Gossypium raimondii HOM05D004570 ORTHO05D005494 6.0e-41 170.6 100 92.0
RcHm_v2.0_CPg0502011 Rosa chinensis HOM05D004570 ORTHO05D005494 6.0e-41 170.6 99 92.9
MELO3C001309.2 Cucumis melo HOM05D004570 ORTHO05D005494 1.0e-40 169.9 100 92.0
MELO3C028029.2 Cucumis melo HOM05D004570 ORTHO05D005494 1.0e-40 169.9 100 92.0
MELO3C028120.2 Cucumis melo HOM05D004570 ORTHO05D005494 1.0e-40 169.9 100 92.0
Gohir.A04G059000 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.0e-40 169.9 100 92.0
Gohir.A11G230402 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.0e-40 169.9 100 92.0
Lalb_Chr07g0192071 Lupinus albus HOM05D004570 ORTHO05D005494 1.3e-40 169.5 94 94.7
RcHm_v2.0_Chr6g0260411 Rosa chinensis HOM05D004570 ORTHO05D005494 5.1e-40 167.5 99 91.9
CAN.G561.9 Capsicum annuum HOM05D004570 ORTHO05D005494 6.7e-40 167.2 100 88.0
PGR111G0035 Punica granatum HOM05D004570 ORTHO05D005494 8.7e-40 166.8 100 91.0
Sed0017454 Sechium edule HOM05D004570 ORTHO05D005494 1.9e-39 165.6 100 90.0
C06p22960 Brassica napus HOM05D004570 ORTHO05D005494 7.4e-39 163.7 99 87.9
BolSC29t60597H Brassica oleracea HOM05D004570 ORTHO05D005494 7.4e-39 163.7 99 87.9
BolSC35t60657H Brassica oleracea HOM05D004570 ORTHO05D005494 7.4e-39 163.7 99 87.9
BolSC46t61008H Brassica oleracea HOM05D004570 ORTHO05D005494 7.4e-39 163.7 99 87.9
BolSC47t61087H Brassica oleracea HOM05D004570 ORTHO05D005494 7.4e-39 163.7 99 87.9
BraA06t25415Z Brassica rapa HOM05D004570 ORTHO05D005494 7.4e-39 163.7 99 87.9
BraSC138t45566Z Brassica rapa HOM05D004570 ORTHO05D005494 7.4e-39 163.7 99 87.9
BraSC25t45856Z Brassica rapa HOM05D004570 ORTHO05D005494 7.4e-39 163.7 99 87.9
BraSC58t46431Z Brassica rapa HOM05D004570 ORTHO05D005494 7.4e-39 163.7 99 87.9
Ciclev10003202m.g Citrus clementina HOM05D004570 ORTHO05D005494 9.6e-39 163.3 99 87.9
C02p28720 Brassica napus HOM05D004570 ORTHO05D005494 2.1e-38 162.2 99 86.9
C06p23030 Brassica napus HOM05D004570 ORTHO05D005494 2.1e-38 162.2 99 86.9
BolC2t08922H Brassica oleracea HOM05D004570 ORTHO05D005494 2.1e-38 162.2 99 86.9
Gohir.D12G107900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.1e-38 162.2 100 88.0
HanXRQChr01g0004801 Helianthus annuus HOM05D004570 ORTHO05D005494 2.1e-38 162.2 99 87.9
HanXRQChr01g0020301 Helianthus annuus HOM05D004570 ORTHO05D005494 2.1e-38 162.2 99 87.9
HanXRQChr02g0041611 Helianthus annuus HOM05D004570 ORTHO05D005494 2.1e-38 162.2 99 87.9
HanXRQChr02g0044851 Helianthus annuus HOM05D004570 ORTHO05D005494 2.1e-38 162.2 99 87.9
HanXRQChr10g0283601 Helianthus annuus HOM05D004570 ORTHO05D005494 2.1e-38 162.2 99 87.9
HanXRQChr10g0284291 Helianthus annuus HOM05D004570 ORTHO05D005494 2.1e-38 162.2 99 87.9
HanXRQChr10g0289311 Helianthus annuus HOM05D004570 ORTHO05D005494 2.1e-38 162.2 99 87.9
HanXRQChr10g0318151 Helianthus annuus HOM05D004570 ORTHO05D005494 2.1e-38 162.2 99 87.9
HanXRQChr11g0326881 Helianthus annuus HOM05D004570 ORTHO05D005494 2.1e-38 162.2 99 87.9
HanXRQCPg0580091 Helianthus annuus HOM05D004570 ORTHO05D005494 2.1e-38 162.2 99 87.9
HanXRQChr04g0095121 Helianthus annuus HOM05D004570 ORTHO05D005494 2.8e-38 161.8 99 86.9
HanXRQChr04g0094281 Helianthus annuus HOM05D004570 ORTHO05D005494 6.3e-38 160.6 99 86.9
ATCG00650 Arabidopsis thaliana HOM05D004570 ORTHO05D005494 1.1e-37 159.8 99 86.9
CARHR282160 Cardamine hirsuta HOM05D004570 ORTHO05D005494 1.1e-37 159.8 99 86.9
Gorai.001G196600 Gossypium raimondii HOM05D004570 ORTHO05D005494 3.1e-37 158.3 100 86.0
AL2G21620 Arabidopsis lyrata HOM05D004570 ORTHO05D005494 5.3e-37 157.5 98 86.7
Lj1g0020553 Lotus japonicus HOM05D004570 ORTHO05D005494 7.6e-36 153.7 95 88.4
LjContig00318g0015790 Lotus japonicus HOM05D004570 ORTHO05D005494 7.6e-36 153.7 95 88.4
Phvul.002G090511 Phaseolus vulgaris HOM05D004570 ORTHO05D005494 1.0e-35 153.3 100 81.0
BolC6t36198H Brassica oleracea HOM05D004570 ORTHO05D005494 5.0e-35 151.0 99 82.8
CAN.G1753.2 Capsicum annuum HOM05D004570 ORTHO05D005494 1.1e-34 149.8 100 80.0
BolSC49t61173H Brassica oleracea HOM05D004570 ORTHO05D005494 1.4e-34 149.4 99 81.8
Glyma.15G238900 Glycine max HOM05D004570 ORTHO05D005494 1.4e-34 149.4 100 82.0
Gohir.A09G109900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 7.2e-34 147.1 100 81.0
Glyma.12G232200 Glycine max HOM05D004570 ORTHO05D005494 2.7e-33 145.2 90 86.7
Gohir.D06G113675 Gossypium hirsutum HOM05D004570 ORTHO05D005494 4.6e-33 144.4 82 95.1
Lalb_Chr23g0274341 Lupinus albus HOM05D004570 ORTHO05D005494 3.0e-32 141.7 86 90.7
arahy.Tifrunner.gnm1.ann1.0J98KG Arachis hypogaea HOM05D004570 ORTHO05D005494 6.3e-30 134.0 88 84.1
arahy.Tifrunner.gnm1.ann1.JZHZ2W Arachis hypogaea HOM05D004570 ORTHO05D005494 6.3e-30 134.0 88 84.1
Gohir.A01G178208 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.7e-27 125.9 87 78.2
Gohir.A04G042801 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.7e-25 118.6 69 91.3
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 2.7e-25 118.6 92 72.8
Gohir.A01G178244 Gossypium hirsutum HOM05D004570 ORTHO05D005494 7.9e-25 117.1 87 73.6
Gorai.006G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.8e-24 115.9 68 91.2
Gohir.D01G101982 Gossypium hirsutum HOM05D004570 ORTHO05D005494 5.1e-24 114.4 68 91.2
Lj2P1237T61 Lonicera japonica HOM05D004570 ORTHO05D005494 6.7e-24 114.0 106 63.2
Lj2P1239T137 Lonicera japonica HOM05D004570 ORTHO05D005494 6.7e-24 114.0 106 63.2
Hund04053 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund07983 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund08573 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund08807 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund20237 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund22775 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund27463 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund27482 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund27573 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund27596 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund27877 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund27896 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund27980 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund28050 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund28104 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund28263 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund28454 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund28470 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund28489 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund28514 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund28525 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund28627 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund28673 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund28719 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund28741 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund28753 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund28842 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund28891 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund29139 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund29177 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund29360 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund29465 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund29622 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund29704 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund29708 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund29718 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund29725 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund29808 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund29832 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund29833 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund29856 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund29864 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund29940 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund30026 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund30252 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund30318 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund30479 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund30523 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Hund30577 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.8e-24 113.6 68 86.8
Os01g0523401 Oryza sativa ssp. japonica HOM05D004570 ORTHO05D005494 1.1e-23 113.2 84 75.0
Zm00001eb435160 Zea mays HOM05D004570 ORTHO05D005494 5.7e-23 110.9 80 77.5
Zm00001eb437170 Zea mays HOM05D004570 ORTHO05D005494 5.7e-23 110.9 80 77.5
Solyc01g017085.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 3.7e-22 108.2 95 64.2
Eucgr.A00291 Eucalyptus grandis HOM05D004570 ORTHO05D005494 6.3e-22 107.5 62 90.3
BNapus_Darmor_BZH_scaffold_287p00190 Brassica napus HOM05D004570 ORTHO05D005494 8.2e-22 107.1 67 86.6
C02p43580 Brassica napus HOM05D004570 ORTHO05D005494 8.2e-22 107.1 67 86.6
BolSC29t60476H Brassica oleracea HOM05D004570 ORTHO05D005494 8.2e-22 107.1 67 86.6
HanXRQChr00c0314g0573531 Helianthus annuus HOM05D004570 ORTHO05D005494 8.2e-22 107.1 67 88.1
HanXRQChr02g0052581 Helianthus annuus HOM05D004570 ORTHO05D005494 8.2e-22 107.1 67 88.1
Hund15803 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.2e-22 107.1 81 74.1
EL10Ac7g17378 Beta vulgaris HOM05D004570 ORTHO05D005494 2.4e-21 105.5 60 90.0
Gorai.001G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 2.4e-21 105.5 68 85.3
HanXRQChr11g0345201 Helianthus annuus HOM05D004570 ORTHO05D005494 1.2e-20 103.2 59 89.8
Eucgr.E01044 Eucalyptus grandis HOM05D004570 ORTHO05D005494 5.9e-20 100.9 68 83.8
Lalb_Chr18g0049721 Lupinus albus HOM05D004570 ORTHO05D005494 2.9e-19 98.6 54 96.3
CSS0008162 Camellia sinensis var. sinensis HOM05D004570 ORTHO05D005494 4.2e-18 94.7 53 96.2
CsaV3_7G024620 Cucumis sativus L. HOM05D004570 ORTHO05D005494 1.2e-17 93.2 56 87.5
Lalb_Chr20g0115501 Lupinus albus HOM05D004570 ORTHO05D005494 2.1e-17 92.4 59 84.7
Lalb_Chr23g0274801 Lupinus albus HOM05D004570 ORTHO05D005494 3.6e-17 91.7 56 87.5
arahy.Tifrunner.gnm1.ann1.S91IH0 Arachis hypogaea HOM05D004570 ORTHO05D005494 4.7e-17 91.3 55 85.5
BraSC103t45456Z Brassica rapa HOM05D004570 ORTHO05D005494 4.7e-17 91.3 81 70.4
Gorai.013G170400 Gossypium raimondii HOM05D004570 ORTHO05D005494 6.1e-17 90.9 59 83.1
GSVIVG01023557001 Vitis vinifera HOM05D000092 ORTHO05D000042 1.8e-16 89.4 65 80.0
BolC9t53164H Brassica oleracea HOM05D004570 ORTHO05D005494 3.7e-14 81.6 51 80.4
BraSC58t46492Z Brassica rapa HOM05D004570 ORTHO05D005494 2.4e-13 79.0 45 86.7
BolC8t52433H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-12 76.6 41 92.7
arahy.Tifrunner.gnm1.ann1.RCVY9V Arachis hypogaea HOM05D000540 ORTHO05D000681 1.1e-10 70.1 40 92.5
BolC4t25866H Brassica oleracea HOM05D004570 ORTHO05D005494 9.4e-10 67.0 37 89.2
SMO086G0030 Selaginella moellendorffii HOM05D004570 ORTHO05D005494 2.3e-08 62.4 73 49.3
arahy.Tifrunner.gnm1.ann1.IY5TEH Arachis hypogaea HOM05D011450 ORTHO05D011017 6.7e-08 60.8 46 69.6


User provided reference genes

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