Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1500 Trochodendron aralioides HOM05D005287 ORTHO05D006893 2.8e-133 480.3 796 100.0
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 2.1e-72 278.1 192 72.9
Dinv11806 Davidia involucrata HOM05D005287 ORTHO05D006893 1.4e-71 275.4 227 65.6
ClCG02G013900 Citrullus lanatus HOM05D005287 ORTHO05D006893 1.7e-66 258.5 222 61.3
Sed0021424 Sechium edule HOM05D005287 ORTHO05D006893 2.3e-66 258.1 213 63.4
CiPaw.01G276400 Carya illinoinensis HOM05D005287 ORTHO05D006893 1.6e-64 251.9 224 59.8
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 1.6e-64 251.9 216 62.0
Aqoxy5G00866 Aquilegia oxysepala HOM05D005287 ORTHO05D006893 3.1e-63 247.7 216 58.8
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 1.2e-62 245.7 217 59.4
Haze_16934 Corylus avellana HOM05D005287 ORTHO05D006893 3.4e-62 244.2 216 58.8
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 5.8e-62 243.4 241 60.6
Cfa001592 Carpinus fangiana HOM05D005287 ORTHO05D006893 7.5e-62 243.0 216 58.8
MELO3C011729.2 Cucumis melo HOM05D005287 ORTHO05D006893 7.5e-62 243.0 222 56.8
Cfa001595 Carpinus fangiana HOM05D005287 ORTHO05D006893 2.2e-61 241.5 216 58.3
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 2.7e-59 234.6 224 55.4
Rhsim06G0174700 Rhododendron simsii HOM05D005287 ORTHO05D006893 3.5e-59 234.2 233 57.1
MD01G1131000 Malus domestica HOM05D005287 ORTHO05D006893 1.5e-57 228.8 224 54.0
Sopen01g053530 Solanum pennellii HOM05D005287 ORTHO05D006893 2.8e-56 224.6 233 53.2
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 3.6e-56 224.2 235 56.6
CAN.G588.65 Capsicum annuum HOM05D005287 ORTHO05D006893 8.1e-56 223.0 217 56.2
RcHm_v2.0_Chr1g0364091 Rosa chinensis HOM05D005287 ORTHO05D006893 4.0e-55 220.7 215 56.7
Solyc01g111470.4 Solanum lycopersicum HOM05D005287 ORTHO05D006893 4.4e-54 217.2 233 52.4
FAN03G3353 Fragaria x ananassa HOM05D005287 ORTHO05D006893 1.3e-53 215.7 225 52.9
Lsat_1_v5_gn_9_67461 Lactuca sativa HOM05D005287 ORTHO05D006893 3.8e-53 214.2 228 53.5
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 8.4e-53 213.0 216 55.6
Peaxi162Scf00016g01355 Petunia axillaris HOM05D005287 ORTHO05D006893 8.4e-53 213.0 216 52.3
Cc09_g02740 Coffea canephora HOM05D005287 ORTHO05D006893 1.4e-52 212.2 232 53.0
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 1.4e-52 212.2 231 53.2
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 7.1e-52 209.9 225 52.0
FAN01G0321 Fragaria x ananassa HOM05D005287 ORTHO05D006893 7.1e-52 209.9 225 51.6
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 7.1e-52 209.9 225 52.0
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 9.2e-52 209.5 217 53.9
Lalb_Chr06g0171161 Lupinus albus HOM05D005287 ORTHO05D006893 1.7e-50 205.3 219 54.8
Psat6g186200 Pisum sativum HOM05D005287 ORTHO05D006893 3.0e-50 204.5 215 54.9
Medtr1g095880 Medicago truncatula HOM05D005287 ORTHO05D006893 4.3e-49 200.7 213 54.5
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 1.6e-48 198.7 222 49.1
PSO566G0007 Papaver somniferum HOM05D005287 ORTHO05D006893 2.8e-48 198.0 231 48.5
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 1.1e-47 196.1 239 49.0
Atru.chr12.633 Acer truncatum HOM05D005287 ORTHO05D006893 3.1e-47 194.5 219 50.7
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 5.3e-47 193.7 218 51.4
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 1.5e-46 192.2 233 48.5
Cpa.g.sc53.25 Carica papaya HOM05D005287 ORTHO05D006893 4.4e-46 190.7 218 51.8
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 5.8e-46 190.3 233 48.5
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 7.6e-46 189.9 228 51.3
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 9.9e-46 189.5 233 47.6
HanXRQChr09g0246581 Helianthus annuus HOM05D005287 ORTHO05D006893 9.9e-46 189.5 191 52.9
DCAR_001539 Daucus carota HOM05D005287 ORTHO05D006893 2.2e-45 188.3 219 49.8
EL10Ac2g03556 Beta vulgaris HOM05D005287 ORTHO05D006893 6.4e-45 186.8 145 64.1
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 8.4e-45 186.4 218 47.7
Ciclev10033834m.g Citrus clementina HOM05D005287 ORTHO05D006893 4.2e-44 184.1 219 49.3
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 7.1e-44 183.3 234 47.0
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 7.1e-44 183.3 234 47.0
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 1.2e-43 182.6 217 50.2
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 1.6e-43 182.2 218 48.2
Ah.16g108250 Amaranthus hybridus HOM05D005287 ORTHO05D006893 2.7e-43 181.4 148 62.2
Sc06g0001790 Simmondsia chinensis HOM05D005287 ORTHO05D006893 3.5e-43 181.0 139 66.9
SHI08859 Sapria himalayana HOM05D005287 ORTHO05D006893 4.6e-43 180.6 232 47.4
CsaV3_5G006270 Cucumis sativus L. HOM05D005287 ORTHO05D006893 1.0e-42 179.5 128 68.0
Gohir.D04G136700 Gossypium hirsutum HOM05D005287 ORTHO05D006893 5.1e-42 177.2 215 46.0
THA.LOC104805786 Tarenaya hassleriana HOM05D005287 ORTHO05D006893 7.3e-41 173.3 218 46.3
AUR62027913 Chenopodium quinoa HOM05D005287 ORTHO05D006893 9.6e-41 172.9 148 62.2
AUR62043641 Chenopodium quinoa HOM05D005287 ORTHO05D006893 9.6e-41 172.9 148 62.2
TWI15G0219 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 9.6e-41 172.9 216 52.3
BcaC06g36186 Brassica carinata HOM05D005287 ORTHO05D006893 1.6e-40 172.2 219 46.6
C07p06750 Brassica napus HOM05D005287 ORTHO05D006893 1.6e-40 172.2 219 46.6
Duzib114G0447 Durio zibethinus HOM05D005287 ORTHO05D006893 1.6e-40 172.2 216 45.4
BolC7t41098H Brassica oleracea HOM05D005287 ORTHO05D006893 6.2e-40 170.2 219 46.1
Thecc.10G068400 Theobroma cacao HOM05D005287 ORTHO05D006893 1.1e-39 169.5 215 44.7
Ca_10593_v3 Cicer arietinum L. HOM05D005287 ORTHO05D006893 2.4e-39 168.3 231 44.6
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 3.1e-39 167.9 221 45.7
AUR62020786 Chenopodium quinoa HOM05D005287 ORTHO05D006893 5.3e-39 167.2 148 60.8
Gorai.012G120500 Gossypium raimondii HOM05D005287 ORTHO05D006893 1.2e-38 166.0 215 44.7
Gohir.A04G096900 Gossypium hirsutum HOM05D005287 ORTHO05D006893 4.5e-38 164.1 215 44.2
PSO210G6828 Papaver somniferum HOM05D005287 ORTHO05D006893 5.8e-38 163.7 196 51.5
PSO782G5729 Papaver somniferum HOM05D005287 ORTHO05D006893 1.3e-37 162.5 232 41.8
Potri.010G217600 Populus trichocarpa HOM05D005287 ORTHO05D006893 2.2e-37 161.8 238 45.4
arahy.Tifrunner.gnm1.ann1.NBNI0E Arachis hypogaea HOM05D005287 ORTHO05D006893 6.4e-37 160.2 220 47.7
PSO210G1683 Papaver somniferum HOM05D005287 ORTHO05D006893 8.4e-37 159.8 198 49.5
arahy.Tifrunner.gnm1.ann1.JQA4UT Arachis hypogaea HOM05D005287 ORTHO05D006893 9.3e-36 156.4 221 47.1
TWI63G1618 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 6.0e-35 153.7 219 47.0
arahy.Tifrunner.gnm1.ann1.VJ1NN4 Arachis hypogaea HOM05D005287 ORTHO05D006893 8.7e-34 149.8 221 45.7
arahy.Tifrunner.gnm1.ann1.VE562J Arachis hypogaea HOM05D005287 ORTHO05D006893 2.0e-30 138.7 220 45.5
HanXRQChr09g0246521 Helianthus annuus HOM05D005287 ORTHO05D006893 5.8e-30 137.1 151 49.0
Carub.0003s3067 Capsella rubella HOM05D005287 ORTHO05D006893 7.6e-30 136.7 188 45.2
HPP92_023661 Vanilla planifolia HOM05D005287 ORTHO05D006893 1.0e-29 136.3 230 43.9
TAR376G0736 Trochodendron aralioides HOM05D005287 ORTHO05D006893 6.4e-29 133.7 104 71.2
arahy.Tifrunner.gnm1.ann1.TR9913 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.9e-28 132.1 218 44.0
Glyma.10G213600 Glycine max HOM05D005287 ORTHO05D006893 9.3e-28 129.8 196 40.8
SalBow6G0018 Salvia bowleyana HOM05D005287 ORTHO05D006893 4.6e-27 127.5 181 45.3
arahy.Tifrunner.gnm1.ann1.IRN669 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.1e-23 116.3 130 52.3
arahy.Tifrunner.gnm1.ann1.KW58JW Arachis hypogaea HOM05D005287 ORTHO05D006893 4.0e-23 114.4 221 41.6
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 1.2e-22 112.8 98 60.2
CSS0048123 Camellia sinensis var. sinensis HOM05D005287 ORTHO05D006893 3.5e-19 101.3 67 73.1
arahy.Tifrunner.gnm1.ann1.0HW3LW Arachis hypogaea HOM05D005287 ORTHO05D006893 7.9e-19 100.1 218 40.4
Actinidia38253 Actinidia chinensis HOM05D005287 ORTHO05D006893 1.8e-18 99.0 115 47.0
SalBow2G1472 Salvia bowleyana HOM05D005287 ORTHO05D006893 2.3e-18 98.6 100 52.0
Nitab4.5_0000061g0180 Nicotiana tabacum HOM05D005287 ORTHO05D006893 7.4e-17 93.6 67 64.2
MBI16_g17961_MAGBIO Magnolia biondii HOM05D005287 ORTHO05D006893 1.8e-15 89.0 67 64.2
Actinidia03030 Actinidia chinensis HOM05D005287 ORTHO05D006893 2.4e-15 88.6 105 46.7
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 9.0e-15 86.7 67 59.7
COL.COLO4_23731 Corchorus olitorius HOM05D005287 ORTHO05D006893 3.4e-14 84.7 114 45.6
Sabra10G0168300 Salix brachista HOM05D005287 ORTHO05D006893 3.4e-14 84.7 67 61.2
Zm00001eb007770 Zea mays HOM05D005287 ORTHO05D006893 4.5e-14 84.3 150 38.0
Lj1E922T3 Lonicera japonica HOM05D005287 ORTHO05D006893 4.2e-12 77.8 82 46.3
PGSC0003DMG401006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 5.5e-12 77.4 67 52.2
PGSC0003DMG402006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 5.5e-12 77.4 67 52.2
arahy.Tifrunner.gnm1.ann1.W4HSG5 Arachis hypogaea HOM05D005287 ORTHO05D006893 7.2e-12 77.0 76 50.0
CDE01G0711 Ceratophyllum demersum HOM05D005287 ORTHO05D006893 1.6e-11 75.9 64 57.8
PGSC0003DMG400004236 Solanum tuberosum HOM05D005287 ORTHO05D006893 1.6e-11 75.9 67 50.7
FAN10G3161 Fragaria x ananassa HOM05D005287 ORTHO05D006893 2.7e-11 75.1 67 52.2
VMungo0720G1141 Vigna mungo HOM05D005287 ORTHO05D006893 6.1e-11 73.9 78 51.3
Phvul.007G091900 Phaseolus vulgaris HOM05D005287 ORTHO05D006893 7.9e-11 73.6 77 51.9
SalBow2G3146 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.8e-10 72.4 67 52.2
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 2.3e-10 72.0 219 32.4
arahy.Tifrunner.gnm1.ann1.K64M7Y Arachis hypogaea HOM05D005287 ORTHO05D006893 3.0e-10 71.6 69 53.6
arahy.Tifrunner.gnm1.ann1.SZH9K7 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.9e-10 71.2 123 34.1
arahy.Tifrunner.gnm1.ann1.C25YBK Arachis hypogaea HOM05D005287 ORTHO05D006893 2.5e-09 68.6 113 35.4
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 5.7e-09 67.4 124 33.9
arahy.Tifrunner.gnm1.ann1.J60LCZ Arachis hypogaea HOM05D005287 ORTHO05D006893 9.7e-09 66.6 74 44.6
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 9.7e-09 66.6 220 29.1
SalBow1G2833 Salvia bowleyana HOM05D005287 ORTHO05D006893 9.7e-09 66.6 73 53.4
HPP92_023662 Vanilla planifolia HOM05D023777 ORTHO05D031065 1.3e-08 66.2 115 39.1
SalBow4G1805 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.7e-08 65.9 62 56.5
arahy.Tifrunner.gnm1.ann1.4R3XMY Arachis hypogaea HOM05D005287 ORTHO05D006893 3.7e-08 64.7 76 44.7
Cfa006701 Carpinus fangiana HOM05D006888 ORTHO05D008371 1.8e-07 62.4 174 25.9
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 2.4e-07 62.0 166 26.5
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 2.4e-07 62.0 158 28.5
Os03g0201400 Oryza sativa ssp. japonica HOM05D005287 ORTHO05D006893 3.1e-07 61.6 90 37.8
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.2e-06 59.7 172 28.5
arahy.Tifrunner.gnm1.ann1.U9N0YZ Arachis hypogaea HOM05D006858 ORTHO05D008767 2.0e-06 58.9 170 28.2
EL10Ac4g09447 Beta vulgaris HOM05D006888 ORTHO05D008371 2.0e-06 58.9 166 27.1
arahy.Tifrunner.gnm1.ann1.HZQS8U Arachis hypogaea HOM05D005287 ORTHO05D006893 5.9e-06 57.4 74 41.9
Hma1.2p1_0137F.1_g062540 Hydrangea macrophylla HOM05D049318 ORTHO05D006893 5.9e-06 57.4 88 38.6
Hma1.2p1_0556F.1_g178055 Hydrangea macrophylla HOM05D049318 ORTHO05D006893 5.9e-06 57.4 88 38.6
CAN.G322.19 Capsicum annuum HOM05D006858 ORTHO05D008767 7.7e-06 57.0 92 30.4


User provided reference genes

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