Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1452 Trochodendron aralioides HOM05D004900 ORTHO05D006392 7.8e-158 560.5 292 100.0
Nn1g04853 Nelumbo nucifera HOM05D004900 ORTHO05D006392 2.7e-102 375.9 235 80.0
CiPaw.06G172200 Carya illinoinensis HOM05D004900 ORTHO05D006392 2.3e-101 372.9 233 79.0
Hma1.2p1_0370F.1_g137745 Hydrangea macrophylla HOM05D004900 ORTHO05D006392 8.8e-101 370.9 218 83.5
Lalb_Chr05g0219191 Lupinus albus HOM05D004900 ORTHO05D006392 2.8e-99 365.9 232 78.9
Cfa004525 Carpinus fangiana HOM05D004900 ORTHO05D006392 1.8e-98 363.2 220 80.9
Eucgr.I01148 Eucalyptus grandis HOM05D004900 ORTHO05D006392 4.1e-98 362.1 230 76.5
SGA_v2.0_scaffold90G27642 Striga asiatica HOM05D004900 ORTHO05D006392 4.1e-98 362.1 211 81.0
MSTRG.16738 Avicennia marina HOM05D004900 ORTHO05D006392 5.3e-98 361.7 232 77.6
Cc02_g28520 Coffea canephora HOM05D004900 ORTHO05D006392 5.3e-98 361.7 234 76.1
CSS0038145 Camellia sinensis var. sinensis HOM05D004900 ORTHO05D006392 7.0e-98 361.3 205 85.4
TPR.G25435 Trifolium pratense HOM05D004900 ORTHO05D006392 7.0e-98 361.3 240 75.0
Medtr4g086020 Medicago truncatula HOM05D004900 ORTHO05D006392 1.6e-97 360.1 216 81.5
Rhsim11G0165400 Rhododendron simsii HOM05D004900 ORTHO05D006392 1.6e-97 360.1 215 82.3
Potri.004G140800 Populus trichocarpa HOM05D004900 ORTHO05D006392 2.0e-97 359.8 234 77.4
Migut.B00351 Erythranthe guttata HOM05D004900 ORTHO05D006392 2.7e-97 359.4 214 81.3
CANSAT25G2295 Cannabis sativa HOM05D004900 ORTHO05D006392 3.5e-97 359.0 216 79.2
Oeu009747.1 Olea europaea HOM05D004900 ORTHO05D006392 5.9e-97 358.2 213 81.2
Nitab4.5_0005249g0010 Nicotiana tabacum HOM05D004900 ORTHO05D006392 7.7e-97 357.8 212 80.2
Nitab4.5_0018347g0010 Nicotiana tabacum HOM05D004900 ORTHO05D006392 7.7e-97 357.8 212 80.2
Peaxi162Scf00003g01630 Petunia axillaris HOM05D004900 ORTHO05D006392 7.7e-97 357.8 216 80.6
Lj4g0002152 Lotus japonicus HOM05D004900 ORTHO05D006392 1.3e-96 357.1 238 74.4
TWI31G0729 Tripterygium wilfordii HOM05D004900 ORTHO05D006392 1.3e-96 357.1 216 79.2
Atru.chr5.2694 Acer truncatum HOM05D004900 ORTHO05D006392 2.2e-96 356.3 232 75.4
Cpa.g.sc62.8 Carica papaya HOM05D004900 ORTHO05D006392 2.2e-96 356.3 205 82.4
Psat7g123960 Pisum sativum HOM05D004900 ORTHO05D006392 2.9e-96 355.9 216 79.6
PGSC0003DMG400025823 Solanum tuberosum HOM05D004900 ORTHO05D006392 2.9e-96 355.9 205 82.4
COL.COLO4_32650 Corchorus olitorius HOM05D004900 ORTHO05D006392 3.8e-96 355.5 230 76.1
Solyc01g108630.3 Solanum lycopersicum HOM05D004900 ORTHO05D006392 3.8e-96 355.5 215 79.5
Nitab4.5_0000876g0100 Nicotiana tabacum HOM05D004900 ORTHO05D006392 5.0e-96 355.1 216 80.1
Sopen01g050850 Solanum pennellii HOM05D004900 ORTHO05D006392 8.5e-96 354.4 205 82.0
VMungo0251G0630 Vigna mungo HOM05D004900 ORTHO05D006392 8.5e-96 354.4 216 79.6
Ca_18688_v3 Cicer arietinum L. HOM05D004900 ORTHO05D006392 1.1e-95 354.0 217 80.2
Dinv42160 Davidia involucrata HOM05D004900 ORTHO05D006392 1.5e-95 353.6 216 80.6
Ciclev10028067m.g Citrus clementina HOM05D004900 ORTHO05D006392 4.2e-95 352.1 235 73.6
Lj5A209T83 Lonicera japonica HOM05D004900 ORTHO05D006392 5.5e-95 351.7 216 79.6
AT2G15620 Arabidopsis thaliana HOM05D004900 ORTHO05D006392 7.2e-95 351.3 233 73.8
Gohir.D13G039300 Gossypium hirsutum HOM05D004900 ORTHO05D006392 7.2e-95 351.3 217 77.4
CAN.G1041.10 Capsicum annuum HOM05D004900 ORTHO05D006392 9.4e-95 350.9 205 81.5
Glyma.07G212800 Glycine max HOM05D004900 ORTHO05D006392 1.2e-94 350.5 216 78.2
Gorai.013G044200 Gossypium raimondii HOM05D004900 ORTHO05D006392 1.2e-94 350.5 217 77.0
FvH4_2g05960 Fragaria vesca HOM05D004900 ORTHO05D006392 1.6e-94 350.1 221 77.8
vmacro02045 Vaccinium macrocarpon HOM05D004900 ORTHO05D006392 1.6e-94 350.1 216 78.7
Manes.10G071700 Manihot esculenta HOM05D004900 ORTHO05D006392 2.1e-94 349.7 232 74.1
arahy.Tifrunner.gnm1.ann1.AXQD4Y Arachis hypogaea HOM05D004900 ORTHO05D006392 2.7e-94 349.4 214 79.4
arahy.Tifrunner.gnm1.ann1.X7K798 Arachis hypogaea HOM05D004900 ORTHO05D006392 4.7e-94 348.6 214 78.5
PGSC0003DMG400008262 Solanum tuberosum HOM05D004900 ORTHO05D006392 4.7e-94 348.6 211 79.6
Carub.0003s2939 Capsella rubella HOM05D004900 ORTHO05D006392 6.1e-94 348.2 233 73.4
THA.LOC104819578 Tarenaya hassleriana HOM05D004900 ORTHO05D006392 6.1e-94 348.2 215 77.2
ClCG05G009960 Citrullus lanatus HOM05D004900 ORTHO05D006392 8.0e-94 347.8 213 78.4
CAN.G663.4 Capsicum annuum HOM05D004900 ORTHO05D006392 1.0e-93 347.4 237 74.3
Duzib248G0136 Durio zibethinus HOM05D004900 ORTHO05D006392 1.0e-93 347.4 206 81.1
THA.LOC104807271 Tarenaya hassleriana HOM05D004900 ORTHO05D006392 1.0e-93 347.4 231 73.6
CARHR105960 Cardamine hirsuta HOM05D004900 ORTHO05D006392 1.4e-93 347.1 225 75.1
FAN24G3555 Fragaria x ananassa HOM05D004900 ORTHO05D006392 1.4e-93 347.1 221 77.4
AL3G47370 Arabidopsis lyrata HOM05D004900 ORTHO05D006392 1.8e-93 346.7 231 74.0
Glyma.02G132100 Glycine max HOM05D004900 ORTHO05D006392 1.8e-93 346.7 216 78.2
RcHm_v2.0_Chr6g0257431 Rosa chinensis HOM05D004900 ORTHO05D006392 1.8e-93 346.7 233 74.7
Sabra04G0092700 Salix brachista HOM05D004900 ORTHO05D006392 1.8e-93 346.7 204 81.9
Gohir.A13G040600 Gossypium hirsutum HOM05D004900 ORTHO05D006392 2.3e-93 346.3 217 76.0
PSO210G5341 Papaver somniferum HOM05D004900 ORTHO05D006392 2.3e-93 346.3 204 81.4
Sed0000080 Sechium edule HOM05D004900 ORTHO05D006392 2.3e-93 346.3 220 77.3
Sopen10g022530 Solanum pennellii HOM05D004900 ORTHO05D006392 2.3e-93 346.3 211 79.1
Aqoxy6G01317 Aquilegia oxysepala HOM05D004900 ORTHO05D006392 3.0e-93 345.9 223 76.7
Thecc.02G101200 Theobroma cacao HOM05D004900 ORTHO05D006392 3.0e-93 345.9 214 78.0
ECA236G3626 Erigeron canadensis HOM05D004900 ORTHO05D006392 4.0e-93 345.5 236 72.0
Solyc10g050890.2 Solanum lycopersicum HOM05D004900 ORTHO05D006392 5.2e-93 345.1 211 78.7
A09p10810 Brassica napus HOM05D004900 ORTHO05D006392 6.8e-93 344.7 214 79.4
BraA09t36723Z Brassica rapa HOM05D004900 ORTHO05D006392 6.8e-93 344.7 214 79.4
MELO3C019505.2 Cucumis melo HOM05D004900 ORTHO05D006392 6.8e-93 344.7 213 77.5
CsaV3_3G018610 Cucumis sativus L. HOM05D004900 ORTHO05D006392 6.8e-93 344.7 213 77.0
QL11p035712 Quercus lobata HOM05D004900 ORTHO05D006392 8.8e-93 344.4 238 73.5
HanXRQChr04g0128191 Helianthus annuus HOM05D004900 ORTHO05D006392 1.2e-92 344.0 216 77.3
PSO170G4054 Papaver somniferum HOM05D004900 ORTHO05D006392 1.2e-92 344.0 201 81.6
BcaB07g31785 Brassica carinata HOM05D004900 ORTHO05D006392 1.5e-92 343.6 231 75.3
BcaC04g23043 Brassica carinata HOM05D004900 ORTHO05D006392 2.0e-92 343.2 208 80.8
C09p12780 Brassica napus HOM05D004900 ORTHO05D006392 2.0e-92 343.2 208 80.8
Phvul.003G292100 Phaseolus vulgaris HOM05D004900 ORTHO05D006392 2.0e-92 343.2 204 80.9
Prupe.8G126000 Prunus persica HOM05D004900 ORTHO05D006392 2.0e-92 343.2 233 74.7
DCAR_029058 Daucus carota HOM05D004900 ORTHO05D006392 2.6e-92 342.8 216 78.2
FAN27G2168 Fragaria x ananassa HOM05D004900 ORTHO05D006392 2.6e-92 342.8 221 74.2
C07p08190 Brassica napus HOM05D004900 ORTHO05D006392 3.4e-92 342.4 226 75.2
BolC7t41235H Brassica oleracea HOM05D004900 ORTHO05D006392 3.4e-92 342.4 226 75.2
AUR62029383 Chenopodium quinoa HOM05D004900 ORTHO05D006392 3.4e-92 342.4 238 70.2
AUR62034289 Chenopodium quinoa HOM05D004900 ORTHO05D006392 3.4e-92 342.4 238 70.2
MD05G1081500 Malus domestica HOM05D004900 ORTHO05D006392 3.4e-92 342.4 222 75.2
Sp3g28890 Schrenkiella parvula HOM05D004900 ORTHO05D006392 3.4e-92 342.4 214 78.5
Thhalv10022613m.g Eutrema salsugineum HOM05D004900 ORTHO05D006392 4.4e-92 342.0 214 78.0
Zm00001eb193660 Zea mays HOM05D004900 ORTHO05D006392 5.7e-92 341.7 233 70.8
Aa31LG8G13280 Aethionema arabicum HOM05D004900 ORTHO05D006392 7.5e-92 341.3 216 76.9
BcaC06g36073 Brassica carinata HOM05D004900 ORTHO05D006392 7.5e-92 341.3 214 78.0
unitig_0.g85 Utricularia gibba HOM05D004900 ORTHO05D006392 7.5e-92 341.3 220 76.4
BolC9t54165H Brassica oleracea HOM05D004900 ORTHO05D006392 9.8e-92 340.9 208 80.3
PGR142G1087 Punica granatum HOM05D004900 ORTHO05D006392 9.8e-92 340.9 225 73.8
A07p05130 Brassica napus HOM05D004900 ORTHO05D006392 1.3e-91 340.5 214 78.0
BraA07t28307Z Brassica rapa HOM05D004900 ORTHO05D006392 1.3e-91 340.5 214 78.0
CAN.G149.20 Capsicum annuum HOM05D004900 ORTHO05D006392 1.3e-91 340.5 205 80.5
Sabra09G0077500 Salix brachista HOM05D004900 ORTHO05D006392 1.3e-91 340.5 211 77.3
BcaC04g23041 Brassica carinata HOM05D004900 ORTHO05D006392 8.3e-91 337.8 227 75.3
ATR0009G021 Amborella trichopoda HOM05D004900 ORTHO05D006392 1.1e-90 337.4 216 75.0
Sc18g0004090 Simmondsia chinensis HOM05D004900 ORTHO05D006392 1.4e-90 337.0 215 74.9
HanXRQChr09g0259251 Helianthus annuus HOM05D004900 ORTHO05D006392 2.4e-90 336.3 220 73.2
Hund22922 Selenicereus undatus HOM05D004900 ORTHO05D006392 2.4e-90 336.3 204 78.4
Ah.04g164910 Amaranthus hybridus HOM05D004900 ORTHO05D006392 9.1e-90 334.3 221 72.9
Os01g0357100 Oryza sativa ssp. japonica HOM05D004900 ORTHO05D006392 1.2e-89 334.0 217 77.0
Zm00001eb255880 Zea mays HOM05D004900 ORTHO05D006392 1.6e-89 333.6 238 69.3
EL10Ac4g08164 Beta vulgaris HOM05D004900 ORTHO05D006392 4.5e-89 332.0 204 76.0
CDE09G0425 Ceratophyllum demersum HOM05D004900 ORTHO05D006392 5.5e-87 325.1 214 71.0
Hund02212 Selenicereus undatus HOM05D004900 ORTHO05D006392 2.1e-86 323.2 232 67.7
HPP92_004227 Vanilla planifolia HOM05D004900 ORTHO05D006392 1.4e-85 320.5 210 71.4
MBI03_g13466_MAGBIO Magnolia biondii HOM05D004900 ORTHO05D006392 8.8e-85 317.8 216 72.7
HPP92_004223 Vanilla planifolia HOM05D004900 ORTHO05D006392 1.2e-84 317.4 210 71.0
SMO200G0071 Selaginella moellendorffii HOM05D004900 ORTHO05D006392 8.3e-83 311.2 233 65.7
SEGI_39412 Sequoiadendron giganteum HOM05D004900 ORTHO05D006392 8.3e-83 311.2 214 69.2
Peaxi162Scf00016g01734 Petunia axillaris HOM05D004900 ORTHO05D006392 1.8e-77 293.5 211 70.6
Actinidia00438 Actinidia chinensis HOM05D004900 ORTHO05D006392 3.0e-77 292.7 165 86.7
Haze_10084 Corylus avellana HOM05D004900 ORTHO05D006392 5.2e-77 292.0 220 67.3
Mapoly0183s0004 Marchantia polymorpha HOM05D004900 ORTHO05D006392 2.6e-76 289.7 232 63.4
Pp3c27_6610 Physcomitrium patens HOM05D004900 ORTHO05D006392 9.8e-76 287.7 200 67.5
Pp3c16_15880 Physcomitrium patens HOM05D004900 ORTHO05D006392 4.9e-75 285.4 264 56.8
Lsat_1_v5_gn_7_86981 Lactuca sativa HOM05D004900 ORTHO05D006392 8.3e-75 284.6 165 82.4
AagrBONN_evm.TU.Sc2ySwM_117.307 Anthoceros agrestis HOM05D004900 ORTHO05D006392 2.3e-72 276.6 216 63.0
Os02g0765900 Oryza sativa ssp. japonica HOM05D004900 ORTHO05D006392 2.3e-72 276.6 174 78.7
AagrBONN_evm.TU.Sc2ySwM_117.432 Anthoceros agrestis HOM05D004900 ORTHO05D006392 3.9e-72 275.8 202 65.8
GSVIVG01031737001 Vitis vinifera HOM05D004900 ORTHO05D006392 6.6e-72 275.0 148 88.5
CBR_g49893 Chara braunii HOM05D004900 ORTHO05D006392 1.9e-71 273.5 207 64.3
Potri.009G101600 Populus trichocarpa HOM05D004900 ORTHO05D006392 8.9e-69 264.6 194 68.6
CiPaw.05G006800 Carya illinoinensis HOM05D004900 ORTHO05D006392 2.0e-65 253.4 215 62.8
Ah.06g184040 Amaranthus hybridus HOM05D004900 ORTHO05D006392 3.5e-65 252.7 224 58.9
MCO01G555 Micromonas commoda HOM05D004900 ORTHO05D006392 3.6e-54 216.1 208 50.0
Cre09.g410750 Chlamydomonas reinhardtii HOM05D004900 ORTHO05D006392 2.5e-39 166.8 178 50.6
Nitab4.5_0001401g0020 Nicotiana tabacum HOM05D004900 ORTHO05D006392 2.4e-37 160.2 101 75.2
PRCOL_00004550 Prasinoderma coloniale HOM05D004900 ORTHO05D006392 2.2e-35 153.7 183 44.8
PRCOL_00002965 Prasinoderma coloniale HOM05D004900 ORTHO05D001484 8.4e-35 151.8 183 45.4
TAR628G1596 Trochodendron aralioides HOM05D004900 ORTHO05D006392 4.8e-30 136.0 109 67.9
Actinidia12947 Actinidia chinensis HOM05D004900 ORTHO05D030937 1.7e-19 100.9 69 75.4
BolC3t18246H Brassica oleracea HOM05D004900 ORTHO05D027847 1.0e-16 91.7 89 55.1
BcaB03g16309 Brassica carinata HOM05D004900 ORTHO05D006392 3.0e-16 90.1 47 91.5
C03p59820 Brassica napus HOM05D004900 ORTHO05D027847 1.0e-11 75.1 78 53.8
VMungo0647G1691 Vigna mungo HOM05D004900 ORTHO05D030937 9.3e-10 68.6 41 75.6
A10p07890 Brassica napus HOM05D004900 ORTHO05D027847 1.2e-09 68.2 61 59.0
BraSC35t46009Z Brassica rapa HOM05D004900 ORTHO05D027847 1.2e-09 68.2 61 59.0
Lsat_1_v5_gn_7_86961 Lactuca sativa HOM05D004900 ORTHO05D006392 2.5e-07 60.5 58 53.4


User provided reference genes

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