Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1418 Trochodendron aralioides HOM05D008012 ORTHO05D010154 3.6e-197 691.4 362 100.0
Dinv42620 Davidia involucrata HOM05D008012 ORTHO05D010154 3.0e-66 256.5 449 38.8
Dinv44854 Davidia involucrata HOM05D008012 ORTHO05D010154 6.3e-56 222.2 369 40.4
CSS0008352 Camellia sinensis var. sinensis HOM05D008012 ORTHO05D010154 5.3e-55 219.2 344 42.7
Cfa013683 Carpinus fangiana HOM05D008012 ORTHO05D010154 5.9e-46 189.1 398 35.7
Nn5g29899 Nelumbo nucifera HOM05D008012 ORTHO05D010154 9.4e-44 181.8 349 38.7
PGR031G3518 Punica granatum HOM05D052328 ORTHO05D010154 9.7e-41 171.8 361 34.3
GSVIVG01009167001 Vitis vinifera HOM05D008012 ORTHO05D010154 9.7e-41 171.8 152 60.5
CiPaw.07G166200 Carya illinoinensis HOM05D008012 ORTHO05D010154 1.3e-40 171.4 366 35.8
Aqoxy5G01307 Aquilegia oxysepala HOM05D008012 ORTHO05D010154 4.2e-36 156.4 180 48.3
Rhsim06G0072100 Rhododendron simsii HOM05D008012 ORTHO05D010154 1.8e-34 151.0 137 54.7
Prupe.1G530900 Prunus persica HOM05D008012 ORTHO05D010154 2.0e-33 147.5 136 52.9
Duzib093G0747 Durio zibethinus HOM05D008012 ORTHO05D010154 3.3e-33 146.7 358 33.2
vmacro21334 Vaccinium macrocarpon HOM05D008012 ORTHO05D010154 7.5e-33 145.6 123 57.7
MBI02_g32605_MAGBIO Magnolia biondii HOM05D008012 ORTHO05D010154 2.8e-32 143.7 376 34.0
COL.COLO4_35233 Corchorus olitorius HOM05D008012 ORTHO05D010154 4.5e-30 136.3 343 33.8
Atru.chr13.1021 Acer truncatum HOM05D008012 ORTHO05D010154 5.9e-30 136.0 352 30.4
Gohir.D05G222500 Gossypium hirsutum HOM05D008012 ORTHO05D010154 1.7e-29 134.4 351 32.2
Hma1.2p1_0125F.1_g058940 Hydrangea macrophylla HOM05D008012 ORTHO05D010154 2.2e-29 134.0 367 31.6
Ciclev10002397m.g Citrus clementina HOM05D008012 ORTHO05D010154 5.0e-29 132.9 225 39.1
Gorai.009G229900 Gossypium raimondii HOM05D008012 ORTHO05D010154 1.5e-28 131.3 351 30.2
Aqoxy6G01439 Aquilegia oxysepala HOM05D008012 ORTHO05D010154 9.4e-28 128.6 139 48.9
Eucgr.F02139 Eucalyptus grandis HOM05D008012 ORTHO05D010154 2.1e-27 127.5 343 33.8
Cpa.g.sc21.9 Carica papaya HOM05D008012 ORTHO05D010154 3.6e-27 126.7 132 47.7
Lalb_Chr11g0065041 Lupinus albus HOM05D008012 ORTHO05D010154 6.1e-27 125.9 164 45.1
RcHm_v2.0_Chr7g0236831 Rosa chinensis HOM05D008012 ORTHO05D010154 1.8e-26 124.4 332 31.6
QL09p017632 Quercus lobata HOM05D008012 ORTHO05D010154 2.3e-26 124.0 192 41.7
Lj1g0025426 Lotus japonicus HOM05D008012 ORTHO05D010154 4.0e-26 123.2 174 43.1
PSO017G0519 Papaver somniferum HOM05D008012 ORTHO05D010154 5.2e-26 122.9 375 33.3
CANSAT25G2577 Cannabis sativa HOM05D008012 ORTHO05D010154 8.8e-26 122.1 139 44.6
EL10Ac1g01062 Beta vulgaris HOM05D008012 ORTHO05D010154 2.0e-25 120.9 185 37.8
Gohir.A05G219900 Gossypium hirsutum HOM05D008012 ORTHO05D010154 2.6e-25 120.6 343 29.2
Lalb_Chr23g0270051 Lupinus albus HOM05D008012 ORTHO05D010154 7.5e-25 119.0 163 42.9
Hund16860 Selenicereus undatus HOM05D008012 ORTHO05D010154 7.5e-25 119.0 163 44.2
Thecc.08G070000 Theobroma cacao HOM05D008012 ORTHO05D010154 1.3e-24 118.2 467 28.9
Glyma.04G091500 Glycine max HOM05D008012 ORTHO05D010154 1.7e-24 117.9 180 39.4
Manes.18G059880 Manihot esculenta HOM05D008012 ORTHO05D010154 3.7e-24 116.7 210 40.5
FAN18G1410 Fragaria x ananassa HOM05D008012 ORTHO05D010154 8.3e-24 115.5 143 48.3
AUR62019041 Chenopodium quinoa HOM05D008012 ORTHO05D010154 1.8e-23 114.4 166 39.8
FvH4_5g35450 Fragaria vesca HOM05D008012 ORTHO05D010154 3.1e-23 113.6 167 43.1
FAN08G2109 Fragaria x ananassa HOM05D008012 ORTHO05D010154 3.1e-23 113.6 167 43.1
FAN04G0544 Fragaria x ananassa HOM05D008012 ORTHO05D010154 5.4e-23 112.8 167 42.5
TWI56G1079 Tripterygium wilfordii HOM05D008012 ORTHO05D010154 7.0e-23 112.5 458 28.4
Glyma.06G093300 Glycine max HOM05D008012 ORTHO05D010154 9.1e-23 112.1 165 41.2
Phvul.009G144400 Phaseolus vulgaris HOM05D008012 ORTHO05D010154 1.2e-22 111.7 182 37.9
VMungo1309G2208 Vigna mungo HOM05D008012 ORTHO05D010154 5.9e-22 109.4 106 46.2
Sc23g0000670 Simmondsia chinensis HOM05D008012 ORTHO05D010154 3.8e-21 106.7 155 38.7
ECA232G0711 Erigeron canadensis HOM05D008012 ORTHO05D010154 8.6e-21 105.5 148 39.9
Potri.005G156500 Populus trichocarpa HOM05D008012 ORTHO05D010154 3.3e-20 103.6 379 29.6
CDE04G1170 Ceratophyllum demersum HOM05D008012 ORTHO05D010154 7.2e-20 102.4 220 35.5
HanXRQChr12g0378041 Helianthus annuus HOM05D008012 ORTHO05D010154 2.1e-19 100.9 125 42.4
Lsat_1_v5_gn_9_75360 Lactuca sativa HOM05D008012 ORTHO05D010154 4.7e-19 99.8 105 43.8
arahy.Tifrunner.gnm1.ann1.S7389H Arachis hypogaea HOM05D008012 ORTHO05D010154 1.0e-18 98.6 137 38.0
Actinidia10381 Actinidia chinensis HOM05D000160 ORTHO05D001344 1.4e-18 98.2 78 55.1
ATR0665G245 Amborella trichopoda HOM05D008012 ORTHO05D010154 4.0e-18 96.7 154 38.3
CAN.G1215.11 Capsicum annuum HOM05D008012 ORTHO05D010154 1.5e-17 94.7 106 43.4
CSS0015058 Camellia sinensis var. sinensis HOM05D008012 ORTHO05D010154 2.0e-17 94.4 72 63.9
HanXRQChr12g0378051 Helianthus annuus HOM05D008012 ORTHO05D010154 2.0e-17 94.4 150 35.3
TPR.G26063 Trifolium pratense HOM05D008012 ORTHO05D010154 4.4e-17 93.2 99 42.4
Ca_15998_v3 Cicer arietinum L. HOM05D008012 ORTHO05D010154 5.7e-17 92.8 90 47.8
Zm00001eb038310 Zea mays HOM05D008012 ORTHO05D010154 3.1e-15 87.0 212 32.5
Sabra05G0120100 Salix brachista HOM05D008012 ORTHO05D010154 5.4e-15 86.3 353 27.8
SEGI_09514 Sequoiadendron giganteum HOM05D008012 ORTHO05D010154 5.4e-15 86.3 102 44.1
Psat5g046360 Pisum sativum HOM05D008012 ORTHO05D010154 3.5e-14 83.6 161 35.4
Medtr3g100460 Medicago truncatula HOM05D008012 ORTHO05D010154 4.5e-14 83.2 122 36.9
Os08g0477800 Oryza sativa ssp. japonica HOM05D008012 ORTHO05D010154 2.8e-11 73.9 226 29.2
Pp3c2_36970 Physcomitrium patens HOM05D008196 ORTHO05D010261 1.7e-08 64.7 110 30.0
Pp3c2_36980 Physcomitrium patens HOM05D008196 ORTHO05D010261 1.7e-08 64.7 110 30.0
CSS0023045 Camellia sinensis var. sinensis HOM05D008012 ORTHO05D010154 4.9e-08 63.2 77 46.8
Pp3c1_4500 Physcomitrium patens HOM05D008196 ORTHO05D010261 1.9e-07 61.2 180 27.2
arahy.Tifrunner.gnm1.ann1.XWH5X4 Arachis hypogaea HOM05D008012 ORTHO05D010154 5.4e-07 59.7 105 35.2
Glyma.03G186700 Glycine max HOM05D008196 ORTHO05D010261 7.0e-07 59.3 83 38.6
HPP92_005977 Vanilla planifolia HOM05D061362 ORTHO05D010154 9.2e-07 58.9 264 25.4
COL.COLO4_22690 Corchorus olitorius HOM05D008012 ORTHO05D010154 1.2e-06 58.5 66 50.0
Glyma.19G186800 Glycine max HOM05D008196 ORTHO05D010261 1.2e-06 58.5 83 37.3
SMO367G1035 Selaginella moellendorffii HOM05D008196 ORTHO05D010261 1.6e-06 58.2 85 34.1
Cfa016460 Carpinus fangiana HOM05D008196 ORTHO05D010261 3.5e-06 57.0 85 32.9
Sopen07g015000 Solanum pennellii HOM05D000002 ORTHO05D000001 3.5e-06 57.0 50 50.0


User provided reference genes

Program Settings