Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 1.4e-150 536.2 263 100.0
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 1.0e-108 397.1 260 74.6
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 1.9e-107 392.9 260 74.2
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 5.9e-104 381.3 260 70.8
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 3.8e-103 378.6 262 71.0
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 6.5e-103 377.9 262 71.0
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 5.5e-102 374.8 260 67.3
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 5.5e-102 374.8 261 69.3
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 6.1e-101 371.3 261 69.3
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.4e-100 370.2 261 68.6
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.4e-100 370.2 261 69.0
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.8e-100 369.8 260 68.8
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 6.7e-100 367.9 260 69.6
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 5.7e-99 364.8 261 65.9
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 2.8e-98 362.5 264 68.2
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 4.8e-98 361.7 261 67.8
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 4.1e-97 358.6 260 66.2
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 1.5e-96 356.7 299 59.2
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 3.4e-96 355.5 262 67.9
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 1.7e-95 353.2 261 64.4
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 5.0e-95 351.7 260 66.2
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 6.5e-95 351.3 261 65.5
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 3.2e-94 349.0 261 64.0
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 2.1e-93 346.3 260 63.8
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 2.1e-93 346.3 262 66.0
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.7e-93 345.9 261 65.1
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 3.6e-93 345.5 260 64.6
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 4.7e-93 345.1 261 65.5
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 6.1e-93 344.7 261 63.2
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 7.9e-93 344.4 261 65.9
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 1.8e-92 343.2 260 64.2
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 5.2e-92 341.7 258 64.0
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 2.0e-91 339.7 260 65.8
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 4.4e-91 338.6 261 64.8
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 5.7e-91 338.2 261 64.8
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 9.7e-91 337.4 261 64.0
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 1.3e-90 337.0 260 62.3
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 1.3e-90 337.0 262 62.2
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 3.7e-90 335.5 261 64.0
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 3.7e-90 335.5 262 63.0
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.7e-90 335.5 262 63.0
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.8e-90 335.1 262 63.4
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 4.8e-90 335.1 285 58.6
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 1.4e-89 333.6 264 64.4
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 4.1e-89 332.0 264 60.2
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 5.3e-89 331.6 260 63.1
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 5.3e-89 331.6 261 61.7
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 9.1e-89 330.9 263 61.2
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 9.1e-89 330.9 224 66.1
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 2.0e-88 329.7 260 62.7
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 1.7e-87 326.6 261 61.7
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 2.2e-87 326.2 262 62.2
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 2.9e-87 325.9 285 57.2
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 2.9e-87 325.9 266 60.5
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 5.0e-87 325.1 256 62.5
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.5e-87 324.7 209 70.8
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.5e-87 324.7 209 70.8
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 6.5e-87 324.7 261 61.3
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 8.5e-87 324.3 261 61.3
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.9e-86 323.2 263 61.2
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 1.9e-86 323.2 263 60.5
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 2.5e-86 322.8 220 68.2
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 4.2e-86 322.0 264 59.8
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 9.4e-86 320.9 240 63.3
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 9.4e-86 320.9 244 66.4
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.6e-85 320.1 253 62.5
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 3.6e-85 318.9 262 62.6
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 4.7e-85 318.5 241 65.1
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 6.1e-85 318.2 261 59.8
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 6.1e-85 318.2 263 57.0
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.0e-84 317.4 259 61.4
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 1.4e-84 317.0 263 59.7
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.3e-84 316.2 222 64.4
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 5.2e-84 315.1 260 60.4
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 3.3e-83 312.4 266 62.8
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 3.3e-83 312.4 241 64.3
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.7e-82 310.1 264 59.1
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 3.7e-82 308.9 265 57.4
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.3e-82 308.1 275 58.5
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 8.2e-82 307.8 292 56.2
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 8.2e-82 307.8 327 51.7
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 1.1e-81 307.4 305 52.8
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 2.4e-81 306.2 280 55.7
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.0e-80 303.1 259 59.1
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 2.7e-80 302.8 261 59.4
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 3.5e-80 302.4 261 57.9
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 4.5e-80 302.0 202 66.8
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 5.9e-80 301.6 240 60.4
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 1.7e-79 300.1 238 61.8
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.5e-78 297.0 240 59.2
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.9e-78 296.6 242 61.2
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 2.1e-77 293.1 261 54.8
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 2.7e-77 292.7 257 59.5
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 8.8e-76 287.7 222 62.6
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 1.3e-74 283.9 263 55.1
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.2e-74 283.1 212 63.2
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 6.3e-74 281.6 275 53.5
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 4.5e-72 275.4 266 54.5
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 4.7e-69 265.4 227 57.7
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.7e-69 265.4 202 64.4
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 5.2e-68 261.9 183 68.3
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 3.4e-67 259.2 307 46.6
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 1.7e-63 246.9 185 61.1
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 3.3e-62 242.7 267 50.9
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 2.8e-61 239.6 234 53.0
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 1.4e-60 237.3 177 67.8
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 8.9e-60 234.6 184 62.0
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 7.5e-59 231.5 233 51.1
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 4.1e-57 225.7 191 53.9
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 2.0e-56 223.4 218 47.7
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 4.6e-56 222.2 186 60.8
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 1.5e-54 217.2 274 43.1
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 4.7e-53 212.2 195 55.4
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.1e-52 211.1 189 54.5
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 2.6e-51 206.5 222 48.6
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 2.6e-51 206.5 208 49.0
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 5.8e-51 205.3 169 62.1
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 2.4e-49 199.9 165 56.4
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.4e-49 199.9 222 46.8
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 5.4e-49 198.7 150 68.7
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 3.9e-47 192.6 171 60.2
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 5.6e-46 188.7 143 60.1
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 1.4e-44 184.1 146 59.6
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.2e-43 181.0 152 61.2
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 7.1e-41 171.8 132 59.8
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 4.7e-37 159.1 126 58.7
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 4.7e-37 159.1 131 63.4
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 8.9e-36 154.8 116 62.1
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 4.9e-34 149.1 219 38.8
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 4.1e-33 146.0 224 39.3
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 4.6e-32 142.5 354 29.7
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.8e-32 141.7 85 80.0
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 5.1e-31 139.0 85 78.8
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 6.6e-31 138.7 85 78.8
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 6.6e-31 138.7 155 49.0
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 1.5e-30 137.5 151 50.3
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.9e-30 137.1 85 76.5
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 5.6e-30 135.6 224 34.4
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 6.4e-26 122.1 301 29.6
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 2.4e-25 120.2 78 71.8
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.2e-25 119.4 241 35.7
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 5.4e-25 119.0 97 56.7
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.7e-24 116.7 116 51.7
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.5e-22 110.9 71 74.6
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 4.3e-22 109.4 72 70.8
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 8.1e-21 105.1 63 71.4
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.3e-20 102.4 66 66.7
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.0e-19 100.5 66 63.6
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.4e-19 99.8 66 65.2
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 4.5e-19 99.4 76 61.8
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.7e-15 85.1 82 53.7
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-14 84.0 84 50.0
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.3e-13 81.3 59 64.4
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 1.1e-12 78.2 91 49.5
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 7.6e-11 72.0 82 50.0
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 1.3e-10 71.2 89 50.6
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 1.9e-09 67.4 42 71.4
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 2.1e-08 63.9 48 62.5
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 1.1e-06 58.2 36 63.9
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 4.3e-06 56.2 134 27.6
TAR371G0964 Trochodendron aralioides HOM05D000762 ORTHO05D002234 5.6e-06 55.8 31 80.6
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 7.4e-06 55.5 66 42.4


User provided reference genes

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