Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 3.8e-160 568.2 295 100.0
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.2e-110 403.7 300 73.3
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 4.1e-90 335.5 298 61.7
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 5.4e-90 335.1 304 63.2
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 1.6e-89 333.6 295 64.4
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 3.6e-86 322.4 305 60.3
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 5.8e-84 315.1 303 61.4
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 3.8e-83 312.4 303 60.7
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.9e-82 310.1 318 57.5
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 1.0e-80 304.3 307 59.0
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 1.9e-79 300.1 304 56.9
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 2.4e-77 293.1 297 55.6
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 1.5e-76 290.4 297 56.9
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 3.4e-76 289.3 324 54.6
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 3.4e-76 289.3 348 51.7
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 5.8e-76 288.5 298 57.0
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 1.3e-75 287.3 298 54.4
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 2.2e-75 286.6 299 56.9
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 2.2e-75 286.6 305 55.7
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 2.9e-75 286.2 297 55.9
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 1.1e-74 284.3 329 51.4
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 2.4e-74 283.1 323 52.6
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 7.1e-74 281.6 298 54.4
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 7.1e-74 281.6 296 55.1
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 3.5e-73 279.3 296 53.0
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 6.0e-73 278.5 302 56.6
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 1.3e-72 277.3 297 51.9
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 1.7e-72 276.9 325 51.1
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 2.3e-72 276.6 305 53.8
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 2.3e-72 276.6 302 53.3
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 3.9e-72 275.8 335 49.3
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 8.7e-72 274.6 298 54.0
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.3e-71 272.7 302 53.0
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 3.3e-71 272.7 303 50.8
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 4.3e-71 272.3 308 51.9
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 4.3e-71 272.3 300 53.0
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 5.6e-71 271.9 311 53.7
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 9.6e-71 271.2 305 52.5
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 1.3e-70 270.8 307 52.4
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 1.3e-70 270.8 303 52.1
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 3.6e-70 269.2 326 52.5
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 8.1e-70 268.1 302 53.0
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 8.1e-70 268.1 304 51.6
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 1.4e-69 267.3 275 59.3
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 1.4e-69 267.3 308 52.3
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 2.4e-69 266.5 295 52.9
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 2.4e-69 266.5 325 48.9
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 2.4e-69 266.5 304 50.7
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 9.0e-69 264.6 311 49.8
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 1.5e-68 263.8 321 52.0
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 2.6e-68 263.1 303 50.8
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 4.5e-68 262.3 313 49.2
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 4.5e-68 262.3 296 51.7
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 7.6e-68 261.5 313 48.9
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 1.3e-67 260.8 313 49.2
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 3.8e-67 259.2 305 52.8
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 8.4e-67 258.1 321 49.5
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 8.4e-67 258.1 341 46.3
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 8.4e-67 258.1 303 49.8
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 1.1e-66 257.7 296 51.4
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 1.1e-66 257.7 296 51.4
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 1.4e-66 257.3 307 47.6
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 1.4e-66 257.3 296 51.0
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 1.4e-66 257.3 310 47.7
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 1.9e-66 256.9 302 51.0
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 1.9e-66 256.9 303 48.8
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 1.9e-66 256.9 297 51.2
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 1.9e-66 256.9 297 51.5
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 5.4e-66 255.4 296 50.0
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 7.1e-66 255.0 363 46.3
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 7.1e-66 255.0 300 54.0
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 1.2e-65 254.2 218 61.5
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 1.2e-65 254.2 268 54.5
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 1.2e-65 254.2 300 52.0
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 3.5e-65 252.7 297 53.2
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 1.8e-64 250.4 304 48.0
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 1.8e-64 250.4 297 51.2
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 1.8e-64 250.4 321 47.7
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 2.3e-64 250.0 217 59.9
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 3.0e-64 249.6 297 47.5
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 5.1e-64 248.8 301 49.8
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 1.5e-63 247.3 325 48.0
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 5.6e-63 245.4 307 48.5
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 5.6e-63 245.4 219 63.5
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 1.3e-62 244.2 297 50.5
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 6.2e-62 241.9 292 50.7
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 8.1e-62 241.5 298 47.7
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 1.4e-61 240.7 313 47.9
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 1.8e-61 240.4 211 60.7
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 1.8e-61 240.4 316 44.0
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 4.0e-61 239.2 319 46.4
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 6.9e-61 238.4 315 47.3
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 6.9e-61 238.4 300 50.7
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 9.0e-61 238.0 307 48.9
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.2e-60 237.7 297 48.5
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 1.5e-60 237.3 299 49.5
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 2.0e-60 236.9 313 46.0
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 5.8e-60 235.3 295 48.5
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 7.6e-60 235.0 308 46.8
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 2.9e-59 233.0 298 45.3
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 6.4e-59 231.9 269 52.8
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 8.4e-59 231.5 309 46.0
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 1.1e-58 231.1 318 45.0
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 1.2e-57 227.6 302 50.0
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 1.0e-56 224.6 300 47.3
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.0e-56 224.6 226 55.3
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 1.3e-56 224.2 313 46.6
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 3.0e-56 223.0 312 45.2
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 1.5e-55 220.7 307 46.3
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 1.5e-55 220.7 307 46.3
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 1.5e-55 220.7 228 50.4
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 1.9e-55 220.3 320 44.7
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 1.9e-55 220.3 320 44.7
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 1.9e-55 220.3 320 44.7
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 3.3e-55 219.5 316 45.9
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 7.4e-55 218.4 308 47.1
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 7.4e-55 218.4 308 47.1
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 2.8e-54 216.5 152 78.3
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 1.5e-52 210.7 303 45.5
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 3.4e-52 209.5 367 41.4
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 7.6e-52 208.4 304 44.7
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 1.0e-48 198.0 311 41.2
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 1.3e-48 197.6 309 44.3
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 5.1e-48 195.7 304 44.7
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 1.5e-47 194.1 245 44.1
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 1.9e-47 193.7 323 40.9
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 6.3e-46 188.7 297 40.4
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 8.2e-46 188.3 297 44.1
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 7.7e-44 181.8 271 43.2
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 7.7e-44 181.8 311 41.5
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 1.0e-43 181.4 159 65.4
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.2e-36 157.9 96 82.3
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 4.2e-34 149.4 328 34.1
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 3.3e-31 139.8 362 32.3
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 1.2e-28 131.3 305 36.7
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 1.2e-28 131.3 305 36.7
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 1.5e-28 131.0 202 42.1
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.0e-27 128.3 358 31.3
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 8.5e-27 125.2 153 49.0
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 3.6e-25 119.8 132 55.3
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 8.0e-25 118.6 360 30.8
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.0e-24 116.7 347 31.7
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 1.1e-23 114.8 335 30.4
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.5e-23 114.4 373 29.5
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 3.7e-22 109.8 140 48.6
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.1e-21 108.2 373 28.7
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 2.2e-19 100.5 121 49.6
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 2.5e-18 97.1 170 38.8
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 2.6e-15 87.0 261 33.7
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.4e-13 81.3 326 28.2
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 1.2e-12 78.2 174 35.1
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 5.9e-12 75.9 75 57.3
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 6.5e-11 72.4 140 35.7
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.2e-09 68.2 52 67.3
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.2e-09 68.2 133 34.6
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 6.1e-09 65.9 251 27.5
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 1.4e-08 64.7 87 48.3
HPP92_024018 Vanilla planifolia HOM05D004891 ORTHO05D005997 1.5e-07 61.2 151 33.8
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 5.7e-07 59.3 176 32.4
Lsat_1_v5_gn_2_134260 Lactuca sativa HOM05D004891 ORTHO05D005997 1.7e-06 57.8 198 28.3
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 2.2e-06 57.4 99 38.4
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 2.2e-06 57.4 129 33.3
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 2.8e-06 57.0 157 31.8
FAN15G3283 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.7e-06 56.6 83 44.6
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 4.8e-06 56.2 235 28.1
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 6.3e-06 55.8 168 31.5
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 6.3e-06 55.8 129 37.2
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 6.3e-06 55.8 90 40.0
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 8.3e-06 55.5 113 36.3
Gohir.A12G252100 Gossypium hirsutum HOM05D004891 ORTHO05D005997 8.3e-06 55.5 154 31.8
PGR142G0227 Punica granatum HOM05D004891 ORTHO05D005997 8.3e-06 55.5 165 27.3
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 8.3e-06 55.5 108 36.1


User provided reference genes

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