Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1364 Trochodendron aralioides HOM05D005432 ORTHO05D004599 4.7e-97 357.8 177 100.0
TAR376G0425 Trochodendron aralioides HOM05D005432 ORTHO05D004599 5.4e-61 238.0 180 71.7
TAR625G0570 Trochodendron aralioides HOM05D005432 ORTHO05D004599 9.5e-58 227.3 165 68.5
TAR381G0486 Trochodendron aralioides HOM05D005432 ORTHO05D004599 6.6e-51 204.5 182 63.7
Manes.13G109800 Manihot esculenta HOM05D005432 ORTHO05D004599 1.3e-38 163.7 184 54.3
Potri.007G006200 Populus trichocarpa HOM05D005432 ORTHO05D004599 1.7e-38 163.3 194 53.6
Sabra14G0006100 Salix brachista HOM05D005432 ORTHO05D004599 1.1e-37 160.6 174 54.6
Sabra07G0004500 Salix brachista HOM05D005432 ORTHO05D004599 2.1e-36 156.4 180 56.1
QL06p039087 Quercus lobata HOM05D005432 ORTHO05D004599 3.5e-36 155.6 182 54.4
Potri.014G006400 Populus trichocarpa HOM05D005432 ORTHO05D004599 6.0e-36 154.8 194 52.1
Actinidia11967 Actinidia chinensis HOM05D005432 ORTHO05D004599 1.7e-35 153.3 175 52.6
Manes.12G116300 Manihot esculenta HOM05D005432 ORTHO05D004599 6.6e-35 151.4 169 56.8
Thecc.01G075000 Theobroma cacao HOM05D005432 ORTHO05D004599 3.1e-32 142.5 192 47.4
Duzib187G0823 Durio zibethinus HOM05D005432 ORTHO05D004599 4.9e-30 135.2 187 48.7
Ciclev10026545m.g Citrus clementina HOM05D005432 ORTHO05D004599 9.3e-29 131.0 194 43.8
Gohir.A11G213000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 9.3e-29 131.0 157 49.7
Duzib147G0737 Durio zibethinus HOM05D005432 ORTHO05D004599 2.1e-28 129.8 191 47.6
MBI16_g39101_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 2.7e-28 129.4 173 50.9
Dinv23035 Davidia involucrata HOM05D005432 ORTHO05D004599 1.0e-27 127.5 175 53.7
Nn5g30641 Nelumbo nucifera HOM05D005432 ORTHO05D004599 1.0e-27 127.5 196 48.5
Gohir.A12G078000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.0e-27 125.9 195 40.5
TWI74G0597 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 3.0e-27 125.9 174 43.7
Gohir.D12G076200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 8.7e-27 124.4 174 44.8
Gorai.007G225500 Gossypium raimondii HOM05D005432 ORTHO05D004599 8.7e-27 124.4 157 46.5
Gorai.008G084600 Gossypium raimondii HOM05D005432 ORTHO05D004599 1.1e-26 124.0 196 41.8
Gohir.D11G210200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 4.3e-26 122.1 184 45.7
TWI77G0559 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 4.3e-26 122.1 168 42.9
CiPaw.01G002700 Carya illinoinensis HOM05D005432 ORTHO05D004599 5.6e-26 121.7 179 46.9
Rhsim10G0095000 Rhododendron simsii HOM05D005432 ORTHO05D004599 5.6e-26 121.7 215 40.9
Duzib264G0647 Durio zibethinus HOM05D005432 ORTHO05D004599 9.6e-26 120.9 190 45.3
FvH4_1g18020 Fragaria vesca HOM05D005432 ORTHO05D004599 4.8e-25 118.6 181 43.6
FAN19G1119 Fragaria x ananassa HOM05D005432 ORTHO05D004599 4.8e-25 118.6 181 43.6
Atru.chr3.1044 Acer truncatum HOM05D005432 ORTHO05D004599 1.8e-24 116.7 185 47.6
DCAR_010807 Daucus carota HOM05D005432 ORTHO05D004599 3.1e-24 115.9 182 41.8
CiPaw.02G001400 Carya illinoinensis HOM05D005432 ORTHO05D004599 4.0e-24 115.5 187 45.5
Hma1.2p1_0424F.1_g150570 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 4.0e-24 115.5 157 47.1
FAN23G2070 Fragaria x ananassa HOM05D005432 ORTHO05D004599 5.3e-24 115.2 180 43.3
MD02G1188600 Malus domestica HOM05D005432 ORTHO05D004599 6.9e-24 114.8 189 45.0
Prupe.6G218300 Prunus persica HOM05D005432 ORTHO05D004599 1.2e-23 114.0 196 41.8
RcHm_v2.0_Chr2g0108511 Rosa chinensis HOM05D005432 ORTHO05D004599 1.5e-23 113.6 180 42.8
COL.COLO4_11602 Corchorus olitorius HOM05D005432 ORTHO05D004599 2.0e-23 113.2 153 45.8
Eucgr.H02317 Eucalyptus grandis HOM05D005432 ORTHO05D004599 5.8e-23 111.7 174 43.7
FAN26G1008 Fragaria x ananassa HOM05D005432 ORTHO05D004599 5.8e-23 111.7 180 42.2
Oeu011980.1 Olea europaea HOM05D005432 ORTHO05D004599 5.8e-23 111.7 151 48.3
Prupe.6G218200 Prunus persica HOM05D005432 ORTHO05D004599 7.6e-23 111.3 164 45.1
PGR102G0812 Punica granatum HOM05D005432 ORTHO05D004599 1.0e-22 110.9 197 45.2
Rhsim10G0095100 Rhododendron simsii HOM05D005432 ORTHO05D004599 1.0e-22 110.9 192 39.1
CANSAT01G2351 Cannabis sativa HOM05D005432 ORTHO05D004599 1.7e-22 110.2 200 45.0
SalBow5G2133 Salvia bowleyana HOM05D005432 ORTHO05D004599 2.2e-22 109.8 170 45.9
Gohir.A11G048800 Gossypium hirsutum HOM05D005432 ORTHO05D004599 6.5e-22 108.2 175 45.7
ClCG01G017720 Citrullus lanatus HOM05D005432 ORTHO05D004599 1.4e-21 107.1 146 47.3
Cfa004151 Carpinus fangiana HOM05D005432 ORTHO05D004599 2.5e-21 106.3 187 43.3
Eucgr.H02318 Eucalyptus grandis HOM05D005432 ORTHO05D004599 9.3e-21 104.4 175 41.1
Gorai.007G056800 Gossypium raimondii HOM05D005432 ORTHO05D004599 1.6e-20 103.6 176 44.3
MELO3C007650.2 Cucumis melo HOM05D005432 ORTHO05D004599 2.1e-20 103.2 144 45.1
Rhsim08G0092400 Rhododendron simsii HOM05D005432 ORTHO05D004599 2.1e-20 103.2 170 41.2
Aqoxy6G02535 Aquilegia oxysepala HOM05D005432 ORTHO05D004599 3.5e-20 102.4 177 40.7
Gohir.D11G052400 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.5e-20 102.4 176 44.3
Haze_15264 Corylus avellana HOM05D005432 ORTHO05D004599 4.6e-20 102.1 182 43.4
Sed0012898 Sechium edule HOM05D005432 ORTHO05D004599 6.7e-19 98.2 175 40.0
Peaxi162Scf00500g00034 Petunia axillaris HOM05D005432 ORTHO05D004599 1.5e-18 97.1 196 36.7
CsaV3_6G044250 Cucumis sativus L. HOM05D005432 ORTHO05D004599 5.7e-18 95.1 137 45.3
PGSC0003DMG400003320 Solanum tuberosum HOM05D005432 ORTHO05D004599 5.7e-18 95.1 189 40.7
Hma1.2p1_1085F.1_g255410 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 1.3e-17 94.0 163 39.9
Nn6g34511 Nelumbo nucifera HOM05D005432 ORTHO05D004599 1.6e-17 93.6 174 44.8
Nitab4.5_0008385g0020 Nicotiana tabacum HOM05D005432 ORTHO05D004599 2.1e-17 93.2 187 38.0
Nitab4.5_0008385g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 6.2e-17 91.7 189 38.1
Sopen02g014700 Solanum pennellii HOM05D005432 ORTHO05D004599 6.2e-17 91.7 202 39.1
Migut.L00424 Erythranthe guttata HOM05D005432 ORTHO05D004599 1.4e-16 90.5 154 39.6
SGA_v2.0_scaffold15G07481 Striga asiatica HOM05D005432 ORTHO05D004599 2.4e-16 89.7 182 40.7
PGSC0003DMG400012977 Solanum tuberosum HOM05D005432 ORTHO05D004599 5.3e-16 88.6 209 38.8
CAN.G775.5 Capsicum annuum HOM05D005432 ORTHO05D004599 1.2e-15 87.4 156 41.7
Solyc02g064570.2 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.5e-15 87.0 201 38.8
MD02G1188700 Malus domestica HOM05D005432 ORTHO05D004599 2.6e-15 86.3 183 42.1
FAN28G2020 Fragaria x ananassa HOM05D005432 ORTHO05D004599 4.5e-15 85.5 106 52.8
Cpa.g.sc129.80 Carica papaya HOM05D005432 ORTHO05D004599 5.8e-15 85.1 168 39.3
Nitab4.5_0000680g0130 Nicotiana tabacum HOM05D005432 ORTHO05D004599 5.8e-15 85.1 152 41.4
Lsat_1_v5_gn_4_160361 Lactuca sativa HOM05D005432 ORTHO05D004599 7.6e-15 84.7 184 35.9
Peaxi162Scf00449g00414 Petunia axillaris HOM05D005432 ORTHO05D004599 1.0e-14 84.3 194 37.1
Cc07_g07280 Coffea canephora HOM05D005432 ORTHO05D004599 1.7e-14 83.6 220 36.4
PGSC0003DMG400002732 Solanum tuberosum HOM05D005432 ORTHO05D004599 2.2e-14 83.2 192 35.4
Migut.H00333 Erythranthe guttata HOM05D005432 ORTHO05D004599 5.0e-14 82.0 147 40.8
VMungo0251G2573 Vigna mungo HOM05D005432 ORTHO05D004599 5.0e-14 82.0 176 40.9
CAN.G1830.1 Capsicum annuum HOM05D005432 ORTHO05D004599 6.5e-14 81.6 148 38.5
Phvul.003G233700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 1.1e-13 80.9 176 39.8
Solyc09g008750.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.4e-13 80.5 202 36.6
Nitab4.5_0000680g0150 Nicotiana tabacum HOM05D005432 ORTHO05D004599 2.5e-13 79.7 164 36.6
VMungo1215G3148 Vigna mungo HOM05D005432 ORTHO05D004599 3.2e-13 79.3 154 42.2
Glyma.05G107500 Glycine max HOM05D005432 ORTHO05D004599 4.2e-13 79.0 182 36.3
Glyma.11G046400 Glycine max HOM05D005432 ORTHO05D004599 4.2e-13 79.0 156 38.5
Lsat_1_v5_gn_4_160141 Lactuca sativa HOM05D005432 ORTHO05D004599 4.2e-13 79.0 216 35.2
Eucgr.H02319 Eucalyptus grandis HOM05D005432 ORTHO05D004599 7.2e-13 78.2 132 40.9
PSO541G2677 Papaver somniferum HOM05D005432 ORTHO05D004599 7.2e-13 78.2 218 32.6
Migut.L00423 Erythranthe guttata HOM05D005432 ORTHO05D004599 1.2e-12 77.4 144 38.9
Glyma.01G195300 Glycine max HOM05D005432 ORTHO05D004599 1.2e-12 77.4 151 41.1
CAN.G1830.3 Capsicum annuum HOM05D005432 ORTHO05D004599 1.6e-12 77.0 181 34.8
Solyc09g008740.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 6.1e-12 75.1 170 34.1
Glyma.17G159600 Glycine max HOM05D005432 ORTHO05D004599 1.0e-11 74.3 190 36.8
Phvul.002G009700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 1.3e-11 73.9 144 42.4
PGSC0003DMG400012978 Solanum tuberosum HOM05D005432 ORTHO05D004599 2.3e-11 73.2 176 32.4
Sopen09g003530 Solanum pennellii HOM05D005432 ORTHO05D004599 3.0e-11 72.8 174 33.9
ECA232G0649 Erigeron canadensis HOM05D005432 ORTHO05D004599 6.7e-11 71.6 167 38.3
Solyc09g008760.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 6.7e-11 71.6 230 32.2
Lj4g0003965 Lotus japonicus HOM05D005432 ORTHO05D004599 1.1e-10 70.9 189 37.0
AT2G22880 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 9.7e-10 67.8 145 35.9
ECA232G3846 Erigeron canadensis HOM05D005432 ORTHO05D004599 9.7e-10 67.8 204 33.3
Lsat_1_v5_gn_4_160281 Lactuca sativa HOM05D005432 ORTHO05D004599 9.7e-10 67.8 101 40.6
Ca_22097_v3 Cicer arietinum L. HOM05D005432 ORTHO05D004599 1.6e-09 67.0 182 36.3
MBI16_g16466_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 1.6e-09 67.0 64 54.7
Sopen09g003540 Solanum pennellii HOM05D005432 ORTHO05D004599 1.6e-09 67.0 160 33.8
CsaV3_2G016320 Cucumis sativus L. HOM05D005432 ORTHO05D004599 2.2e-09 66.6 66 53.0
AL4G12470 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 2.8e-09 66.2 143 32.9
TPR.G24244 Trifolium pratense HOM05D005432 ORTHO05D004599 2.8e-09 66.2 82 50.0
AUR62007532 Chenopodium quinoa HOM05D022777 ORTHO05D004599 3.7e-09 65.9 160 33.8
MELO3C020843.2 Cucumis melo HOM05D005432 ORTHO05D004599 4.8e-09 65.5 53 62.3
Sp4g01930 Schrenkiella parvula HOM05D009364 ORTHO05D004599 4.8e-09 65.5 143 34.3
A09p57200 Brassica napus HOM05D009364 ORTHO05D004599 6.3e-09 65.1 144 35.4
C08p40200 Brassica napus HOM05D009364 ORTHO05D004599 6.3e-09 65.1 144 35.4
BolC8t51591H Brassica oleracea HOM05D009364 ORTHO05D004599 6.3e-09 65.1 144 35.4
BraA09t41113Z Brassica rapa HOM05D009364 ORTHO05D004599 6.3e-09 65.1 144 35.4
Carub.0004s0201 Capsella rubella HOM05D009364 ORTHO05D004599 6.3e-09 65.1 145 35.2
Oeu021446.1 Olea europaea HOM05D005432 ORTHO05D004599 6.3e-09 65.1 165 35.2
CDE04G1981 Ceratophyllum demersum HOM05D005432 ORTHO05D004599 8.2e-09 64.7 145 33.8
TPR.G24237 Trifolium pratense HOM05D005432 ORTHO05D004599 8.2e-09 64.7 92 47.8
Lalb_Chr16g0378951 Lupinus albus HOM05D005432 ORTHO05D004599 1.8e-08 63.5 84 46.4
Medtr4g097360 Medicago truncatula HOM05D005432 ORTHO05D004599 1.8e-08 63.5 187 36.9
Sopen09g003550 Solanum pennellii HOM05D005432 ORTHO05D004599 2.4e-08 63.2 179 30.7
Medtr4g097350 Medicago truncatula HOM05D005432 ORTHO05D004599 3.1e-08 62.8 179 38.5
TPR.G24220 Trifolium pratense HOM05D005432 ORTHO05D004599 4.1e-08 62.4 85 50.6
AL3G48200 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 5.3e-08 62.0 143 32.2
Medtr5g015190 Medicago truncatula HOM05D005432 ORTHO05D004599 5.3e-08 62.0 58 56.9
ECA232G3481 Erigeron canadensis HOM05D005432 ORTHO05D004599 6.9e-08 61.6 173 31.8
Thhalv10000717m.g Eutrema salsugineum HOM05D009364 ORTHO05D004599 6.9e-08 61.6 141 34.0
Medtr4g097280 Medicago truncatula HOM05D005432 ORTHO05D004599 6.9e-08 61.6 186 36.6
CARHR114200 Cardamine hirsuta HOM05D009364 ORTHO05D004599 2.6e-07 59.7 147 33.3
TPR.G9336 Trifolium pratense HOM05D005432 ORTHO05D004599 2.6e-07 59.7 59 52.5
Aa31LG7G13930 Aethionema arabicum HOM05D009364 ORTHO05D004599 5.9e-07 58.5 71 47.9
ClCG02G012170 Citrullus lanatus HOM05D005432 ORTHO05D004599 1.0e-06 57.8 57 56.1
AUR62004024 Chenopodium quinoa HOM05D022777 ORTHO05D004599 1.3e-06 57.4 146 31.5
Lalb_Chr05g0225821 Lupinus albus HOM05D005432 ORTHO05D004599 1.3e-06 57.4 181 32.0
Os12g0635400 Oryza sativa ssp. japonica HOM05D028778 ORTHO05D030403 1.3e-06 57.4 104 35.6
THA.LOC104804211 Tarenaya hassleriana HOM05D009364 ORTHO05D004599 1.3e-06 57.4 76 40.8
BcaC07g41018 Brassica carinata HOM05D009364 ORTHO05D004599 1.7e-06 57.0 64 48.4
Ah.02g125350 Amaranthus hybridus HOM05D022777 ORTHO05D004599 3.8e-06 55.8 176 29.5
Psat2g172120 Pisum sativum HOM05D005432 ORTHO05D004599 5.0e-06 55.5 59 55.9
Psat4g081120 Pisum sativum HOM05D005432 ORTHO05D004599 5.0e-06 55.5 83 47.0
BcaC01g00392 Brassica carinata HOM05D009364 ORTHO05D004599 6.5e-06 55.1 49 59.2
C03p79220 Brassica napus HOM05D009364 ORTHO05D004599 6.5e-06 55.1 49 59.2
BolC3t20164H Brassica oleracea HOM05D009364 ORTHO05D004599 6.5e-06 55.1 49 59.2
Nitab4.5_0016059g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 6.5e-06 55.1 113 42.5


User provided reference genes

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