Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 5.8e-169 597.4 293 100.0
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 1.7e-112 409.8 422 55.9
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 5.0e-112 408.3 422 54.7
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 2.3e-109 399.4 420 53.6
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 6.7e-109 397.9 422 52.6
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 6.7e-109 397.9 422 52.8
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.6e-108 396.0 420 52.4
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 1.1e-106 390.6 373 57.1
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 1.1e-106 390.6 358 58.1
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.4e-106 390.2 330 65.2
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 8.5e-104 380.9 419 51.3
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 1.9e-103 379.8 431 50.6
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.9e-103 379.8 416 52.6
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 4.2e-103 378.6 327 59.0
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 7.2e-103 377.9 422 49.8
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 1.6e-102 376.7 418 52.9
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 1.6e-102 376.7 422 50.9
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 3.6e-102 375.6 422 51.2
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 6.1e-102 374.8 453 48.8
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 5.2e-101 371.7 418 50.7
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 6.8e-101 371.3 422 50.2
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 8.8e-101 370.9 420 49.5
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 2.6e-100 369.4 316 59.8
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 1.7e-99 366.7 422 49.5
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.2e-99 366.3 405 51.6
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 2.2e-99 366.3 419 49.6
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 2.2e-99 366.3 422 49.8
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 6.3e-99 364.8 422 49.8
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 6.3e-99 364.8 418 50.2
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 8.3e-99 364.4 419 49.9
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 8.3e-99 364.4 436 48.2
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 1.1e-98 364.0 364 52.7
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 1.1e-98 364.0 405 50.6
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 1.4e-98 363.6 411 50.1
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 3.1e-98 362.5 416 50.0
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 3.1e-98 362.5 417 49.6
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 5.4e-98 361.7 418 48.6
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 5.4e-98 361.7 422 49.5
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 7.0e-98 361.3 419 49.2
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 2.7e-97 359.4 418 48.1
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 7.7e-97 357.8 422 47.9
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 1.0e-96 357.5 423 47.8
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 1.7e-96 356.7 422 47.9
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 5.0e-96 355.1 418 48.3
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 1.1e-95 354.0 420 47.6
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 1.9e-95 353.2 418 48.8
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 7.2e-95 351.3 406 50.5
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 7.2e-95 351.3 422 49.3
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 3.6e-94 349.0 419 48.0
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 6.1e-94 348.2 419 48.0
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.4e-93 347.1 422 48.6
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 1.8e-93 346.7 418 45.9
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 3.0e-93 345.9 425 48.2
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 4.0e-93 345.5 410 49.5
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 1.5e-92 343.6 404 48.0
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 3.4e-92 342.4 411 47.2
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 2.8e-91 339.3 410 47.1
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 2.8e-91 339.3 425 46.8
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 3.7e-91 339.0 403 49.9
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 6.3e-91 338.2 422 46.0
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.1e-90 337.4 422 45.5
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.8e-90 336.7 419 47.0
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 2.4e-90 336.3 417 45.6
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 3.1e-90 335.9 418 45.9
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 3.1e-90 335.9 457 44.6
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 9.2e-90 334.3 422 46.0
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 2.0e-89 333.2 448 45.1
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 2.0e-89 333.2 379 50.7
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 3.5e-89 332.4 401 46.9
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 5.9e-89 331.6 328 53.4
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 1.0e-88 330.9 422 45.3
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 2.9e-88 329.3 384 50.5
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 2.9e-88 329.3 425 44.2
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 2.9e-88 329.3 405 47.4
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 3.9e-88 328.9 418 45.2
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 1.1e-87 327.4 373 50.4
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 5.6e-87 325.1 364 48.9
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 9.5e-87 324.3 423 45.2
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 6.1e-86 321.6 443 42.7
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 1.0e-85 320.9 417 44.6
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.0e-85 320.9 420 44.0
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 4.0e-85 318.9 419 44.9
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 2.0e-84 316.6 306 55.9
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.7e-83 313.5 366 48.6
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.2e-83 313.2 366 48.4
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 2.2e-83 313.2 409 45.2
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 6.4e-83 311.6 398 47.2
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 1.1e-82 310.8 309 53.4
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 2.3e-80 303.1 428 42.5
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 8.6e-80 301.2 355 46.8
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.5e-79 300.4 345 47.8
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 5.8e-76 288.5 370 44.9
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 1.9e-74 283.5 350 47.4
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 6.0e-73 278.5 354 45.8
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 7.8e-73 278.1 388 43.0
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 8.9e-69 264.6 291 53.3
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 1.2e-68 264.2 610 33.6
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 3.1e-61 239.6 412 35.2
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 4.4e-60 235.7 420 37.1
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 2.7e-57 226.5 353 40.8
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 7.3e-55 218.4 124 79.8
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 3.1e-53 213.0 126 76.2
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 9.0e-53 211.5 164 66.5
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 5.8e-52 208.8 130 73.1
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 9.9e-52 208.0 127 72.4
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 1.3e-51 207.6 129 73.6
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 1.7e-51 207.2 163 67.5
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 6.4e-51 205.3 431 34.6
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 8.4e-51 204.9 163 66.9
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 2.4e-50 203.4 163 65.0
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 7.1e-50 201.8 127 71.7
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 7.1e-50 201.8 127 71.7
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 3.9e-48 196.1 163 62.6
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 6.6e-48 195.3 131 70.2
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 8.7e-48 194.9 387 36.4
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 3.6e-46 189.5 163 60.1
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 4.5e-44 182.6 165 60.6
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 4.5e-44 182.6 327 34.9
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 1.9e-39 167.2 339 30.7
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 2.4e-37 160.2 165 52.1
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 4.9e-35 152.5 104 66.3
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 6.5e-35 152.1 98 74.5
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 6.5e-35 152.1 98 74.5
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.6e-33 147.5 93 76.3
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.6e-33 147.5 93 76.3
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.3e-32 143.7 83 74.7
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 3.0e-32 143.3 93 74.2
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.3e-30 137.9 95 72.6
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 5.8e-28 129.0 108 56.5
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 1.0e-27 128.3 76 82.9
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.9e-26 124.0 129 48.1
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.2e-25 121.3 76 76.3
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 8.5e-19 98.6 339 25.7
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 1.4e-18 97.8 66 66.7
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.3e-11 74.7 47 78.7
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 5.0e-11 72.8 47 76.6
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 4.2e-10 69.7 47 72.3


User provided reference genes

Program Settings