Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 2323.5 1172 100.0
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1940.2 1171 83.8
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1937.5 1171 83.6
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1937.2 1173 83.7
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1935.2 1172 83.4
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1931.0 1172 83.2
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1920.6 1171 83.3
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1920.2 1177 83.2
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1916.4 1173 83.2
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1913.3 1173 83.0
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1907.5 1173 82.1
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1892.9 1175 82.7
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1891.3 1173 82.4
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1886.3 1173 82.5
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1886.3 1171 81.6
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1886.3 1172 82.0
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1884.4 1173 82.4
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1880.9 1182 80.9
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1878.2 1173 82.4
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1878.2 1172 82.0
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1875.1 1172 81.1
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1867.0 1172 80.5
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1863.2 1174 80.7
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1858.6 1182 80.6
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1857.0 1172 80.9
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1854.0 1173 81.0
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1850.1 1169 80.4
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1844.7 1216 78.5
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1842.0 1212 79.4
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1840.9 1172 79.8
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1839.7 1220 78.1
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1839.3 1220 78.0
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1837.0 1220 78.1
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1834.3 1226 76.5
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1832.4 1208 78.0
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1831.2 1172 79.3
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1830.1 1208 77.9
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1822.4 1174 79.7
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1819.7 1231 77.0
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1819.7 1209 78.7
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1818.9 1171 79.3
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1817.7 1173 79.7
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1817.0 1196 78.7
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1815.8 1177 79.0
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1815.8 1172 79.1
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1814.3 1173 79.3
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1814.3 1196 78.5
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1812.3 1173 79.3
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1812.0 1170 79.6
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1807.7 1171 78.9
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1799.6 1173 78.1
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1798.5 1178 77.9
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1797.7 1172 78.7
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1790.8 1173 78.0
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1787.3 1173 78.1
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1785.8 1174 77.9
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1785.0 1173 78.4
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1785.0 1172 77.8
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1784.2 1177 78.7
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1777.7 1172 77.4
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1776.9 1173 78.0
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1773.1 1175 77.7
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1772.7 1169 78.7
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1771.1 1159 77.8
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1770.4 1232 74.7
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1766.5 1231 74.4
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1763.0 1172 76.9
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1761.5 1172 77.4
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1761.1 1205 76.0
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1758.4 1170 76.7
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1757.7 1203 76.7
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1752.3 1171 76.9
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1743.0 1171 76.7
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1742.6 1174 76.3
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1737.2 1177 75.6
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1735.7 1174 76.7
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1733.4 1177 75.5
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1730.7 1176 76.7
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1730.3 1147 77.3
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1728.0 1177 75.9
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1725.7 1169 76.6
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1724.9 1172 75.9
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1724.1 1231 73.3
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1720.3 1182 75.2
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1719.9 1176 76.1
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1717.6 1100 80.3
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1717.6 1173 75.9
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1716.0 1172 75.9
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1712.6 1171 76.3
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1711.0 1173 75.8
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1709.9 1172 76.2
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1706.8 1210 74.4
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1704.1 1191 74.7
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1703.0 1173 75.0
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1702.6 1174 75.1
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1701.8 1174 75.3
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1699.9 1176 75.4
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1698.3 1174 75.0
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1697.6 1177 75.2
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1697.2 1177 75.1
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1695.2 1175 75.1
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1690.2 1187 74.6
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1688.7 1174 75.0
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1685.6 1176 75.9
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1673.3 1150 75.3
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1672.5 1182 73.3
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1670.6 1181 72.7
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1667.5 1175 74.8
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1665.6 1179 74.5
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1665.6 1073 79.5
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1661.7 1178 74.0
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1661.4 1180 72.8
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1656.0 1178 73.8
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1653.3 1205 72.1
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1651.3 1192 73.2
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1651.0 1174 72.8
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1644.8 1174 72.7
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1595.5 1109 75.0
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1585.9 947 84.1
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1525.0 947 80.9
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1505.0 1173 68.6
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1487.2 1180 67.5
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1447.2 1034 74.2
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1380.9 968 73.8
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1367.4 814 86.0
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1353.6 947 75.3
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1319.7 979 72.4
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1313.9 959 72.8
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1298.5 888 75.0
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1285.8 971 70.9
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1267.7 1174 60.1
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1193.3 809 76.5
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1185.2 812 75.5
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1150.6 811 75.2
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 0.0e+00 1096.3 726 78.1
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 1.6e-311 1072.8 1175 54.6
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 4.4e-292 1008.4 1177 49.1
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 1.1e-290 1003.8 1200 47.8
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 3.5e-289 998.8 720 73.1
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 2.3e-285 986.1 540 90.6
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 1.4e-269 933.7 603 79.4
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.5e-199 700.3 432 81.5
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 5.0e-171 606.3 360 83.3
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 5.2e-152 543.1 307 86.0
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 2.0e-151 541.2 904 41.8
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 1.1e-136 492.3 309 79.6
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 3.1e-136 490.7 309 79.3
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 2.6e-127 461.1 617 46.5
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 5.4e-125 453.4 285 83.2
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 7.1e-125 453.0 803 36.7
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 1.2e-108 399.1 1330 28.6
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 8.7e-99 366.3 229 78.2
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 3.7e-97 360.9 511 44.4
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 3.8e-86 324.3 198 80.8
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 1.8e-83 315.5 283 62.9
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 5.7e-82 310.5 182 85.2
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 2.2e-81 308.5 205 76.1
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 6.3e-73 280.4 188 72.9
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 6.9e-72 276.9 257 61.1
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 1.1e-66 259.6 144 87.5
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 7.4e-66 256.9 181 73.5
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 7.2e-61 240.4 186 69.9
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 1.2e-52 213.0 151 72.8
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 2.3e-51 208.8 128 83.6
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 7.0e-48 197.2 118 85.6
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 8.5e-46 190.3 125 76.0
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 1.1e-37 163.3 92 91.3
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 1.3e-30 139.8 86 80.2
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 1.3e-30 139.8 91 74.7
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 1.3e-30 139.8 91 74.7
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 4.3e-21 108.2 78 70.5
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 9.5e-21 107.1 82 70.7
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 6.8e-19 100.9 81 59.3
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 2.6e-18 99.0 103 51.5
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 1.7e-17 96.3 51 78.4
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 3.2e-16 92.0 59 76.3
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 5.1e-14 84.7 169 37.9


User provided reference genes

Program Settings