Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1175 Trochodendron aralioides HOM05D000278 ORTHO05D004794 4.6e-91 337.8 163 100.0
CSS0003568 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004794 4.5e-30 135.2 88 84.1
Rhsim05G0064500 Rhododendron simsii HOM05D000278 ORTHO05D004794 1.7e-29 133.3 82 86.6
Ah.04g164010 Amaranthus hybridus HOM05D000278 ORTHO05D004794 2.3e-29 132.9 86 83.7
Cpa.g.sc103.86 Carica papaya HOM05D000278 ORTHO05D004794 2.3e-29 132.9 87 81.6
Dinv32114 Davidia involucrata HOM05D000278 ORTHO05D004794 5.0e-29 131.7 82 86.6
MSTRG.11745 Avicennia marina HOM05D000278 ORTHO05D004794 8.6e-29 131.0 82 82.9
Hund02336 Selenicereus undatus HOM05D000278 ORTHO05D004794 1.1e-28 130.6 88 81.8
CSS0017916 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004794 1.9e-28 129.8 75 90.7
Oeu031561.1 Olea europaea HOM05D000278 ORTHO05D004794 2.5e-28 129.4 82 81.7
Sed0013756 Sechium edule HOM05D000278 ORTHO05D004794 2.5e-28 129.4 85 82.4
MELO3C015615.2 Cucumis melo HOM05D000278 ORTHO05D004794 4.2e-28 128.6 82 84.1
CsaV3_1G041990 Cucumis sativus L. HOM05D000278 ORTHO05D004794 4.2e-28 128.6 82 84.1
CiPaw.14G092200 Carya illinoinensis HOM05D000278 ORTHO05D004794 5.5e-28 128.3 82 85.4
Sed0019588 Sechium edule HOM05D000278 ORTHO05D004794 5.5e-28 128.3 82 82.9
Dinv32841 Davidia involucrata HOM05D000278 ORTHO05D004794 1.2e-27 127.1 82 84.1
Peaxi162Scf00275g00008 Petunia axillaris HOM05D000278 ORTHO05D004794 1.2e-27 127.1 87 81.6
Duzib187G1092 Durio zibethinus HOM05D000278 ORTHO05D004794 3.6e-27 125.6 86 80.2
FAN25G3467 Fragaria x ananassa HOM05D000278 ORTHO05D004794 3.6e-27 125.6 75 86.7
Actinidia22468 Actinidia chinensis HOM05D000278 ORTHO05D004794 8.0e-27 124.4 72 88.9
CANSAT35G1978 Cannabis sativa HOM05D000278 ORTHO05D004794 8.0e-27 124.4 88 79.5
Prupe.6G154400 Prunus persica HOM05D000278 ORTHO05D004794 8.0e-27 124.4 73 87.7
RcHm_v2.0_Chr2g0128841 Rosa chinensis HOM05D000278 ORTHO05D004794 1.0e-26 124.0 87 79.3
unitig_26.g9787 Utricularia gibba HOM05D000278 ORTHO05D004794 1.4e-26 123.6 85 80.0
Nn6g31931 Nelumbo nucifera HOM05D000278 ORTHO05D004794 1.8e-26 123.2 76 85.5
FvH4_3g27240 Fragaria vesca HOM05D000278 ORTHO05D004794 4.0e-26 122.1 73 86.3
FAN11G3227 Fragaria x ananassa HOM05D000278 ORTHO05D004794 4.0e-26 122.1 73 86.3
Actinidia06356 Actinidia chinensis HOM05D000278 ORTHO05D004794 8.9e-26 120.9 72 87.5
FAN16G1090 Fragaria x ananassa HOM05D000278 ORTHO05D004794 1.2e-25 120.6 72 86.1
Lalb_Chr04g0249751 Lupinus albus HOM05D000278 ORTHO05D004794 1.2e-25 120.6 71 88.7
AUR62013959 Chenopodium quinoa HOM05D000278 ORTHO05D004794 1.5e-25 120.2 74 87.8
CAN.G199.51 Capsicum annuum HOM05D000278 ORTHO05D004794 2.6e-25 119.4 72 87.5
GSVIVG01002278001 Vitis vinifera HOM05D000278 ORTHO05D004794 2.6e-25 119.4 71 85.9
Nitab4.5_0003976g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004794 3.4e-25 119.0 71 87.3
Nitab4.5_0005873g0040 Nicotiana tabacum HOM05D000278 ORTHO05D004794 3.4e-25 119.0 71 87.3
Potri.009G157400 Populus trichocarpa HOM05D000278 ORTHO05D004794 3.4e-25 119.0 85 77.6
Peaxi162Scf00038g02039 Petunia axillaris HOM05D000278 ORTHO05D004794 5.7e-25 118.2 70 88.6
ECA238G3358 Erigeron canadensis HOM05D000278 ORTHO05D004794 9.8e-25 117.5 88 76.1
HanXRQChr15g0468701 Helianthus annuus HOM05D000278 ORTHO05D004794 9.8e-25 117.5 85 77.6
Eucgr.J00618 Eucalyptus grandis HOM05D000278 ORTHO05D004794 1.3e-24 117.1 73 84.9
Gohir.D12G001100 Gossypium hirsutum HOM05D000278 ORTHO05D004794 1.3e-24 117.1 82 79.3
CDE02G3738 Ceratophyllum demersum HOM05D000278 ORTHO05D004794 1.7e-24 116.7 88 76.1
CDE06G0515 Ceratophyllum demersum HOM05D000278 ORTHO05D004794 1.7e-24 116.7 88 76.1
Potri.004G195300 Populus trichocarpa HOM05D000278 ORTHO05D004794 1.7e-24 116.7 85 75.3
TWI75G0864 Tripterygium wilfordii HOM05D000278 ORTHO05D004794 2.2e-24 116.3 71 83.1
Aqoxy6G02051 Aquilegia oxysepala HOM05D000278 ORTHO05D004794 2.8e-24 115.9 69 87.0
TAR625G0442 Trochodendron aralioides HOM05D000278 ORTHO05D004794 2.8e-24 115.9 69 87.0
BcaC01g04077 Brassica carinata HOM05D000278 ORTHO05D004794 3.7e-24 115.5 69 87.0
Gorai.008G000400 Gossypium raimondii HOM05D000278 ORTHO05D004794 3.7e-24 115.5 82 78.0
THA.LOC104816967 Tarenaya hassleriana HOM05D000278 ORTHO05D004794 3.7e-24 115.5 69 87.0
COL.COLO4_14011 Corchorus olitorius HOM05D000278 ORTHO05D004794 4.9e-24 115.2 71 84.5
TAR381G1107 Trochodendron aralioides HOM05D000278 ORTHO05D004794 4.9e-24 115.2 70 84.3
Zm00001eb207780 Zea mays HOM05D000278 ORTHO05D004794 4.9e-24 115.2 72 83.3
BcaB04g21115 Brassica carinata HOM05D000278 ORTHO05D004794 6.3e-24 114.8 68 88.2
BcaB06g25572 Brassica carinata HOM05D000278 ORTHO05D004794 6.3e-24 114.8 68 88.2
A05p37520 Brassica napus HOM05D000278 ORTHO05D004794 6.3e-24 114.8 68 88.2
C05p56080 Brassica napus HOM05D000278 ORTHO05D004794 6.3e-24 114.8 68 88.2
BolC1t05287H Brassica oleracea HOM05D000278 ORTHO05D004794 6.3e-24 114.8 68 88.2
BolC5t34275H Brassica oleracea HOM05D000278 ORTHO05D004794 6.3e-24 114.8 68 88.2
BraA01t04158Z Brassica rapa HOM05D000278 ORTHO05D004794 6.3e-24 114.8 68 88.2
BraA05t22550Z Brassica rapa HOM05D000278 ORTHO05D004794 6.3e-24 114.8 68 88.2
Manes.11G109600 Manihot esculenta HOM05D000278 ORTHO05D004794 6.3e-24 114.8 69 85.5
arahy.Tifrunner.gnm1.ann1.H62ZJF Arachis hypogaea HOM05D000278 ORTHO05D004794 8.3e-24 114.4 70 84.3
Gohir.A12G001300 Gossypium hirsutum HOM05D000278 ORTHO05D004794 8.3e-24 114.4 82 76.8
RcHm_v2.0_Chr5g0049871 Rosa chinensis HOM05D000278 ORTHO05D004794 8.3e-24 114.4 71 83.1
BcaB04g18663 Brassica carinata HOM05D000278 ORTHO05D004794 1.4e-23 113.6 68 86.8
BraA03t12891Z Brassica rapa HOM05D000278 ORTHO05D004794 1.4e-23 113.6 68 86.8
EL10Ac4g08419 Beta vulgaris HOM05D000278 ORTHO05D004794 1.8e-23 113.2 70 84.3
Haze_23638 Corylus avellana HOM05D000278 ORTHO05D004794 1.8e-23 113.2 105 64.8
Cc11_g01300 Coffea canephora HOM05D000278 ORTHO05D004794 2.4e-23 112.8 64 90.6
Lsat_1_v5_gn_5_64940 Lactuca sativa HOM05D000278 ORTHO05D004794 2.4e-23 112.8 82 76.8
C03p45300 Brassica napus HOM05D000278 ORTHO05D004794 3.2e-23 112.5 68 85.3
BolC3t16793H Brassica oleracea HOM05D000278 ORTHO05D004794 3.2e-23 112.5 68 85.3
AagrBONN_evm.TU.Sc2ySwM_117.2607 Anthoceros agrestis HOM05D000278 ORTHO05D004794 4.1e-23 112.1 86 72.1
AT3G11830 Arabidopsis thaliana HOM05D000278 ORTHO05D004794 4.1e-23 112.1 69 88.4
BcaC09g48192 Brassica carinata HOM05D000278 ORTHO05D004794 4.1e-23 112.1 69 88.4
Carub.0003s1118 Capsella rubella HOM05D000278 ORTHO05D004794 4.1e-23 112.1 69 88.4
CARHR086380 Cardamine hirsuta HOM05D000278 ORTHO05D004794 4.1e-23 112.1 69 88.4
Hma1.2p1_1466F.1_g285420 Hydrangea macrophylla HOM05D000278 ORTHO05D004794 4.1e-23 112.1 64 89.1
BcaC05g29321 Brassica carinata HOM05D000278 ORTHO05D004794 5.4e-23 111.7 64 90.6
MD03G1164100 Malus domestica HOM05D000278 ORTHO05D004794 5.4e-23 111.7 64 89.1
DCAR_027486 Daucus carota HOM05D000278 ORTHO05D004794 7.0e-23 111.3 64 89.1
Lj2A907T33 Lonicera japonica HOM05D000278 ORTHO05D004794 7.0e-23 111.3 64 89.1
MBI08_g21308_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004794 7.0e-23 111.3 64 89.1
Os06g0687700 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004794 7.0e-23 111.3 64 90.6
Solyc06g065520.3 Solanum lycopersicum HOM05D000278 ORTHO05D004794 7.0e-23 111.3 64 90.6
Sopen06g024160 Solanum pennellii HOM05D000278 ORTHO05D004794 7.0e-23 111.3 64 90.6
PGSC0003DMG400026124 Solanum tuberosum HOM05D000278 ORTHO05D004794 7.0e-23 111.3 64 90.6
TWI31G0144 Tripterygium wilfordii HOM05D000278 ORTHO05D004794 7.0e-23 111.3 67 86.6
AL3G23390 Arabidopsis lyrata HOM05D000278 ORTHO05D004794 9.2e-23 110.9 69 87.0
Migut.A00285 Erythranthe guttata HOM05D000278 ORTHO05D004794 9.2e-23 110.9 70 84.3
Atru.chr3.2916 Acer truncatum HOM05D000278 ORTHO05D004794 1.2e-22 110.5 67 86.6
A03p37310 Brassica napus HOM05D000278 ORTHO05D004794 1.2e-22 110.5 64 89.1
AUR62019654 Chenopodium quinoa HOM05D000278 ORTHO05D004794 1.2e-22 110.5 79 75.9
Glyma.14G043400 Glycine max HOM05D000278 ORTHO05D004794 1.2e-22 110.5 64 89.1
Lalb_Chr10g0105841 Lupinus albus HOM05D000278 ORTHO05D004794 1.2e-22 110.5 64 89.1
Sp3g10060 Schrenkiella parvula HOM05D000278 ORTHO05D004794 1.2e-22 110.5 69 87.0
Phvul.008G208800 Phaseolus vulgaris HOM05D000278 ORTHO05D004794 1.6e-22 110.2 64 87.5
SEGI_21483 Sequoiadendron giganteum HOM05D000278 ORTHO05D004794 1.6e-22 110.2 68 83.8
VMungo0647G0629 Vigna mungo HOM05D000278 ORTHO05D004794 1.6e-22 110.2 64 87.5
ATR0099G041 Amborella trichopoda HOM05D000278 ORTHO05D004794 2.0e-22 109.8 75 78.7
Duzib264G0906 Durio zibethinus HOM05D000278 ORTHO05D004794 2.0e-22 109.8 68 82.4
PSO541G3784 Papaver somniferum HOM05D000278 ORTHO05D004794 2.0e-22 109.8 64 85.9
QL01p020501 Quercus lobata HOM05D000278 ORTHO05D004794 2.0e-22 109.8 64 89.1
ClCG03G014240 Citrullus lanatus HOM05D000278 ORTHO05D004794 2.7e-22 109.4 82 75.6
HanXRQChr12g0378161 Helianthus annuus HOM05D000278 ORTHO05D004794 2.7e-22 109.4 64 85.9
LjContig00564g0022207 Lotus japonicus HOM05D000278 ORTHO05D004794 2.7e-22 109.4 64 87.5
PSO675G7679 Papaver somniferum HOM05D000278 ORTHO05D004794 2.7e-22 109.4 64 84.4
ATR0099G017 Amborella trichopoda HOM05D000278 ORTHO05D004794 3.5e-22 109.0 75 76.0
ATR0099G056 Amborella trichopoda HOM05D000278 ORTHO05D004794 3.5e-22 109.0 75 78.7
Thhalv10020422m.g Eutrema salsugineum HOM05D000278 ORTHO05D004794 3.5e-22 109.0 64 87.5
Medtr5g087560 Medicago truncatula HOM05D000278 ORTHO05D004794 3.5e-22 109.0 64 87.5
Psat0s921g0240 Pisum sativum HOM05D000278 ORTHO05D004794 3.5e-22 109.0 64 87.5
TPR.G11653 Trifolium pratense HOM05D000278 ORTHO05D004794 3.5e-22 109.0 64 87.5
Glyma.02G273200 Glycine max HOM05D000278 ORTHO05D004794 4.5e-22 108.6 64 85.9
PGR119G0569 Punica granatum HOM05D000278 ORTHO05D004794 4.5e-22 108.6 64 87.5
Sabra04G0132500 Salix brachista HOM05D000278 ORTHO05D004794 4.5e-22 108.6 64 85.9
THA.LOC104826479 Tarenaya hassleriana HOM05D000278 ORTHO05D004794 4.5e-22 108.6 62 90.3
Aa31LG5G8530 Aethionema arabicum HOM05D000278 ORTHO05D004794 5.9e-22 108.2 64 85.9
ATR0408G001 Amborella trichopoda HOM05D000278 ORTHO05D004794 7.8e-22 107.8 75 77.3
Migut.E01490 Erythranthe guttata HOM05D000278 ORTHO05D004794 7.8e-22 107.8 64 84.4
SGA_v2.0_scaffold169G38626 Striga asiatica HOM05D000278 ORTHO05D004794 7.8e-22 107.8 61 90.2
ATR0099G014 Amborella trichopoda HOM05D000278 ORTHO05D004794 1.0e-21 107.5 79 74.7
unitig_749.g13821 Utricularia gibba HOM05D000278 ORTHO05D004794 1.0e-21 107.5 64 85.9
Duzib147G1120 Durio zibethinus HOM05D000278 ORTHO05D004794 1.3e-21 107.1 62 88.7
Sabra09G0123000 Salix brachista HOM05D000278 ORTHO05D004794 1.3e-21 107.1 64 85.9
ATR0638G001 Amborella trichopoda HOM05D000278 ORTHO05D004794 2.3e-21 106.3 75 76.0
ATR0661G304 Amborella trichopoda HOM05D000278 ORTHO05D004794 3.9e-21 105.5 62 85.5
Gohir.A11G230300 Gossypium hirsutum HOM05D000278 ORTHO05D004794 5.0e-21 105.1 62 87.1
Thecc.01G126500 Theobroma cacao HOM05D000278 ORTHO05D004794 5.0e-21 105.1 62 87.1
Pp3c15_8230 Physcomitrium patens HOM05D000278 ORTHO05D004794 8.6e-21 104.4 74 71.6
HPP92_007029 Vanilla planifolia HOM05D000278 ORTHO05D004794 8.6e-21 104.4 62 85.5
HPP92_007072 Vanilla planifolia HOM05D000278 ORTHO05D004794 8.6e-21 104.4 62 85.5
Gohir.D11G229500 Gossypium hirsutum HOM05D000278 ORTHO05D004794 1.5e-20 103.6 62 85.5
Gorai.003G068300 Gossypium raimondii HOM05D000278 ORTHO05D004794 1.5e-20 103.6 62 85.5
DCAR_023796 Daucus carota HOM05D000278 ORTHO05D004794 2.5e-20 102.8 71 77.5
Mapoly0156s0015 Marchantia polymorpha HOM05D000278 ORTHO05D004794 2.8e-19 99.4 74 71.6
SMO347G0357 Selaginella moellendorffii HOM05D000278 ORTHO05D004794 3.6e-19 99.0 64 76.6
Pp3c9_14010 Physcomitrium patens HOM05D000278 ORTHO05D004794 6.1e-19 98.2 74 68.9
Ciclev10014771m.g Citrus clementina HOM05D000278 ORTHO05D004794 1.4e-18 97.1 55 90.9
SalBow8G4259 Salvia bowleyana HOM05D000278 ORTHO05D004794 1.4e-18 97.1 56 87.5
SalBow8G4293 Salvia bowleyana HOM05D000278 ORTHO05D004794 1.4e-18 97.1 56 87.5
TAR633G2038 Trochodendron aralioides HOM05D010033 ORTHO05D011583 2.3e-18 96.3 56 85.7
FAN16G3564 Fragaria x ananassa HOM05D000278 ORTHO05D004794 4.0e-18 95.5 55 87.3
Sc03g0004270 Simmondsia chinensis HOM05D000278 ORTHO05D004794 4.0e-18 95.5 55 89.1
SHI25343 Sapria himalayana HOM05D000278 ORTHO05D004794 7.5e-17 91.3 55 81.8
Cre01.g026550 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004794 3.7e-16 89.0 91 58.2
Aqoxy6G02048 Aquilegia oxysepala HOM05D000278 ORTHO05D004794 1.1e-15 87.4 80 67.5
CBR_g42151 Chara braunii HOM05D000278 ORTHO05D004794 2.4e-15 86.3 88 52.3
MCO06G165 Micromonas commoda HOM05D000278 ORTHO05D004794 4.1e-15 85.5 89 55.1
ATR1195G001 Amborella trichopoda HOM05D000278 ORTHO05D004794 8.9e-10 67.8 44 77.3
PRCOL_00005497 Prasinoderma coloniale HOM05D000278 ORTHO05D004794 1.2e-09 67.4 71 53.5
Aa31LG3G5320 Aethionema arabicum HOM05D000278 ORTHO05D004794 2.2e-08 63.2 41 82.9
Cfa025880 Carpinus fangiana HOM05D000278 ORTHO05D004794 2.7e-06 56.2 53 54.7


User provided reference genes

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