Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.2e-82 309.7 150 100.0
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 3.2e-46 188.7 144 72.9
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 2.5e-35 152.5 135 60.0
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 3.4e-32 142.1 164 53.0
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 3.8e-31 138.7 141 54.6
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 9.3e-30 134.0 152 50.7
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 3.5e-29 132.1 146 51.4
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 4.6e-29 131.7 130 56.2
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 4.6e-29 131.7 153 49.7
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 1.3e-28 130.2 160 49.4
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 3.9e-28 128.6 154 50.0
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 5.1e-28 128.3 163 52.8
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 6.7e-28 127.9 138 51.4
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.1e-27 127.1 143 55.9
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 7.4e-27 124.4 157 47.1
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 1.3e-26 123.6 148 50.7
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 2.8e-26 122.5 155 48.4
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 6.2e-26 121.3 158 46.8
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 6.2e-26 121.3 171 49.1
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 1.1e-25 120.6 148 49.3
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 2.4e-25 119.4 160 46.2
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 9.0e-25 117.5 112 57.1
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 9.0e-25 117.5 154 48.7
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 1.2e-24 117.1 136 51.5
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 2.6e-24 115.9 174 44.8
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 3.4e-24 115.5 169 43.8
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 1.0e-23 114.0 162 42.0
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 1.7e-23 113.2 164 43.3
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.2e-23 112.8 158 47.5
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.2e-23 112.8 158 47.5
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 3.8e-23 112.1 166 45.2
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 4.9e-23 111.7 165 46.7
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.5e-23 111.3 135 49.6
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 6.5e-23 111.3 153 44.4
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 1.1e-22 110.5 162 44.4
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 7.1e-22 107.8 135 48.9
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 9.3e-22 107.5 149 46.3
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.2e-21 107.1 155 47.1
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.2e-21 107.1 135 48.9
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.7e-21 105.9 140 45.7
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 2.7e-21 105.9 110 54.5
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 3.5e-21 105.5 123 48.8
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 4.6e-21 105.1 147 46.3
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 6.0e-21 104.8 146 45.9
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 3.0e-20 102.4 166 45.2
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.0e-20 102.4 160 46.9
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 3.0e-20 102.4 152 45.4
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 3.0e-20 102.4 148 44.6
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 3.9e-20 102.1 154 42.9
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 5.1e-20 101.7 144 44.4
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 6.7e-20 101.3 160 36.2
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 8.7e-20 100.9 139 43.2
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 8.7e-20 100.9 148 39.2
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.1e-19 100.5 100 55.0
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.1e-19 100.5 145 46.2
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.1e-19 100.5 141 43.3
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 1.1e-19 100.5 148 43.2
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.5e-19 100.1 145 45.5
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-19 100.1 148 47.3
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.9e-19 99.8 145 42.8
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.9e-19 99.8 161 40.4
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 4.3e-19 98.6 149 43.0
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 5.7e-19 98.2 140 45.0
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 7.4e-19 97.8 173 42.2
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.7e-19 97.4 146 41.1
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 9.7e-19 97.4 148 46.6
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 9.7e-19 97.4 145 40.7
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 1.3e-18 97.1 120 54.2
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 1.3e-18 97.1 136 46.3
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 2.8e-18 95.9 157 43.3
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 2.8e-18 95.9 150 42.0
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 4.8e-18 95.1 179 36.3
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 8.2e-18 94.4 146 40.4
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 8.2e-18 94.4 152 42.1
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 8.2e-18 94.4 158 42.4
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 1.4e-17 93.6 147 41.5
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 5.3e-17 91.7 155 39.4
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 5.3e-17 91.7 145 41.4
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 6.9e-17 91.3 148 39.9
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.9e-17 91.3 133 41.4
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 6.9e-17 91.3 165 38.8
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 9.0e-17 90.9 160 37.5
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.2e-16 90.5 170 40.6
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 1.2e-16 90.5 144 41.0
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 1.5e-16 90.1 171 38.0
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 1.5e-16 90.1 159 37.1
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 2.6e-16 89.4 170 40.6
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 3.4e-16 89.0 171 37.4
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 4.5e-16 88.6 139 40.3
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 5.9e-16 88.2 151 43.0
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 7.6e-16 87.8 170 38.2
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.0e-15 87.4 146 39.7
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.7e-15 86.7 145 43.4
Gorai.010G027400 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.7e-15 86.7 146 41.1
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 3.8e-15 85.5 137 43.1
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 5.0e-15 85.1 164 36.6
Gohir.A06G025700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.0e-15 85.1 143 40.6
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 6.5e-15 84.7 150 40.7
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 1.1e-14 84.0 145 43.4
Gohir.D06G022800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.1e-14 84.0 145 41.4
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 1.1e-14 84.0 152 40.8
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.4e-14 83.6 150 42.0
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.9e-14 83.2 145 42.8
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 3.2e-14 82.4 150 38.7
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 4.2e-14 82.0 155 40.0
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 7.2e-14 81.3 163 37.4
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 1.6e-13 80.1 150 38.7
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 1.6e-13 80.1 132 38.6
MBI16_g06081_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 1.8e-12 76.6 104 44.2
Prupe.1G419200 Prunus persica HOM05D005317 ORTHO05D005146 1.8e-12 76.6 143 36.4
Potri.014G012900 Populus trichocarpa HOM05D005317 ORTHO05D005146 2.3e-12 76.3 151 45.0
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 3.9e-12 75.5 148 37.8
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 5.1e-12 75.1 147 36.1
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 5.1e-12 75.1 131 40.5
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 8.8e-12 74.3 187 34.8
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-11 73.6 131 40.5
PGSC0003DMG400004968 Solanum tuberosum HOM05D005317 ORTHO05D005146 1.5e-11 73.6 157 37.6
Atru.chr13.869 Acer truncatum HOM05D011270 ORTHO05D012905 1.9e-11 73.2 162 38.9
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.9e-11 73.2 156 38.5
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 1.9e-11 73.2 138 44.2
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 4.3e-11 72.0 136 41.9
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 7.4e-11 71.2 147 38.8
Migut.H00325 Erythranthe guttata HOM05D005317 ORTHO05D005146 9.7e-11 70.9 162 34.6
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.3e-10 70.5 146 42.5
CDE04G2604 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 2.8e-10 69.3 154 37.7
Phvul.009G074100 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 4.8e-10 68.6 141 35.5
Gohir.D05G215433 Gossypium hirsutum HOM05D005317 ORTHO05D005146 8.2e-10 67.8 126 38.1
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 1.8e-09 66.6 104 44.2
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 1.8e-09 66.6 141 37.6
Phvul.009G074000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 3.1e-09 65.9 137 37.2
Sc03g0002520 Simmondsia chinensis HOM05D005317 ORTHO05D005146 3.1e-09 65.9 102 40.2
Gohir.D01G111366 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.1e-09 65.5 75 48.0
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 6.9e-09 64.7 110 35.5
Phvul.001G030900 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 1.2e-08 63.9 123 37.4
C05p08330 Brassica napus HOM05D011270 ORTHO05D012905 1.5e-08 63.5 92 43.5
BolC5t29583H Brassica oleracea HOM05D011270 ORTHO05D012905 1.5e-08 63.5 92 43.5
Haze_22390 Corylus avellana HOM05D000071 ORTHO05D000029 2.6e-08 62.8 131 36.6
TPR.G13134 Trifolium pratense HOM05D014755 ORTHO05D005146 2.6e-08 62.8 131 36.6
BcaC05g24800 Brassica carinata HOM05D011270 ORTHO05D012905 4.5e-08 62.0 92 43.5
Glyma.14G089087 Glycine max HOM05D014755 ORTHO05D005146 4.5e-08 62.0 138 34.1
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 5.9e-08 61.6 85 43.5
A06p06850 Brassica napus HOM05D011270 ORTHO05D012905 5.9e-08 61.6 92 42.4
BraA06t23899Z Brassica rapa HOM05D011270 ORTHO05D012905 5.9e-08 61.6 92 42.4
Rhsim08G0090500 Rhododendron simsii HOM05D005317 ORTHO05D005146 5.9e-08 61.6 159 34.6
Glyma.17G232800 Glycine max HOM05D014755 ORTHO05D005146 7.7e-08 61.2 140 34.3
Gohir.A05G212200 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.7e-08 61.2 126 35.7
FAN27G2237 Fragaria x ananassa HOM05D030376 ORTHO05D005146 1.0e-07 60.8 163 33.1
CARHR010290 Cardamine hirsuta HOM05D011270 ORTHO05D012905 1.3e-07 60.5 95 43.2
ClCG05G026550 Citrullus lanatus HOM05D029900 ORTHO05D005146 1.3e-07 60.5 140 33.6
FAN15G0380 Fragaria x ananassa HOM05D030376 ORTHO05D005146 1.7e-07 60.1 166 32.5
FAN20G0770 Fragaria x ananassa HOM05D030376 ORTHO05D005146 1.7e-07 60.1 165 32.7
Sp1g08810 Schrenkiella parvula HOM05D001270 ORTHO05D001099 1.7e-07 60.1 149 34.2
Sed0025721 Sechium edule HOM05D005317 ORTHO05D005146 1.7e-07 60.1 97 45.4
HPP92_026659 Vanilla planifolia HOM05D066124 ORTHO05D051582 1.7e-07 60.1 128 34.4
ECA246G5098 Erigeron canadensis HOM05D005317 ORTHO05D005146 2.2e-07 59.7 139 35.3
Lj5g0011909 Lotus japonicus HOM05D014755 ORTHO05D005146 2.9e-07 59.3 120 35.8
C08p13500 Brassica napus HOM05D011270 ORTHO05D012905 3.8e-07 58.9 96 41.7
PGSC0003DMG400021404 Solanum tuberosum HOM05D061607 ORTHO05D005146 3.8e-07 58.9 151 32.5
VMungo0647G0350 Vigna mungo HOM05D014755 ORTHO05D005146 3.8e-07 58.9 122 36.9
Glyma.06G048800 Glycine max HOM05D014755 ORTHO05D005146 5.0e-07 58.5 144 36.1
BcaC07g38551 Brassica carinata HOM05D011270 ORTHO05D012905 6.5e-07 58.2 142 36.6
BolC8t48976H Brassica oleracea HOM05D011270 ORTHO05D012905 6.5e-07 58.2 142 36.6
BcaC07g38545 Brassica carinata HOM05D011270 ORTHO05D012905 1.1e-06 57.4 142 36.6
A08p34120 Brassica napus HOM05D011270 ORTHO05D012905 1.1e-06 57.4 93 41.9
BolC8t48985H Brassica oleracea HOM05D011270 ORTHO05D012905 1.1e-06 57.4 142 36.6
arahy.Tifrunner.gnm1.ann1.BL50ZB Arachis hypogaea HOM05D014755 ORTHO05D005146 1.4e-06 57.0 87 40.2
BcaC07g38553 Brassica carinata HOM05D011270 ORTHO05D012905 1.4e-06 57.0 138 37.0
CsaV3_6G044310 Cucumis sativus L. HOM05D005317 ORTHO05D005146 1.4e-06 57.0 164 33.5
BraA08t35324Z Brassica rapa HOM05D011270 ORTHO05D012905 1.9e-06 56.6 139 36.7
Carub.0001s0960 Capsella rubella HOM05D011270 ORTHO05D012905 1.9e-06 56.6 145 33.8
HPP92_015703 Vanilla planifolia HOM05D066124 ORTHO05D051582 1.9e-06 56.6 123 33.3
FAN24G2816 Fragaria x ananassa HOM05D030376 ORTHO05D005146 7.2e-06 54.7 120 35.8
ECA232G3441 Erigeron canadensis HOM05D005317 ORTHO05D005146 9.4e-06 54.3 147 34.0
Lsat_1_v5_gn_3_86260 Lactuca sativa HOM05D005317 ORTHO05D005146 9.4e-06 54.3 143 30.8


User provided reference genes

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