Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1054 Trochodendron aralioides HOM05D004900 ORTHO05D006392 3.7e-134 481.5 234 100.0
Nn1g04853 Nelumbo nucifera HOM05D004900 ORTHO05D006392 4.7e-121 438.0 232 89.7
Hma1.2p1_0370F.1_g137745 Hydrangea macrophylla HOM05D004900 ORTHO05D006392 3.2e-117 425.2 231 85.3
PGR142G1087 Punica granatum HOM05D004900 ORTHO05D006392 7.8e-116 420.6 231 84.8
RcHm_v2.0_Chr6g0257431 Rosa chinensis HOM05D004900 ORTHO05D006392 1.0e-115 420.2 231 84.4
Haze_10084 Corylus avellana HOM05D004900 ORTHO05D006392 1.3e-115 419.9 231 84.4
QL11p035712 Quercus lobata HOM05D004900 ORTHO05D006392 8.6e-115 417.2 231 83.5
Atru.chr5.2694 Acer truncatum HOM05D004900 ORTHO05D006392 1.1e-114 416.8 232 85.8
FvH4_2g05960 Fragaria vesca HOM05D004900 ORTHO05D006392 1.1e-114 416.8 231 83.1
ClCG05G009960 Citrullus lanatus HOM05D004900 ORTHO05D006392 1.5e-114 416.4 232 85.3
MELO3C019505.2 Cucumis melo HOM05D004900 ORTHO05D006392 1.5e-114 416.4 232 84.5
FAN24G3555 Fragaria x ananassa HOM05D004900 ORTHO05D006392 1.9e-114 416.0 231 83.1
Lj5A209T83 Lonicera japonica HOM05D004900 ORTHO05D006392 2.5e-114 415.6 231 83.1
CiPaw.06G172200 Carya illinoinensis HOM05D004900 ORTHO05D006392 4.3e-114 414.8 232 83.2
Eucgr.I01148 Eucalyptus grandis HOM05D004900 ORTHO05D006392 7.3e-114 414.1 231 84.0
Cfa004525 Carpinus fangiana HOM05D004900 ORTHO05D006392 1.2e-113 413.3 231 82.3
MBI03_g13466_MAGBIO Magnolia biondii HOM05D004900 ORTHO05D006392 1.2e-113 413.3 232 82.8
Prupe.8G126000 Prunus persica HOM05D004900 ORTHO05D006392 1.2e-113 413.3 231 82.7
Sabra09G0077500 Salix brachista HOM05D004900 ORTHO05D006392 1.2e-113 413.3 231 81.8
CANSAT25G2295 Cannabis sativa HOM05D004900 ORTHO05D006392 1.6e-113 412.9 231 81.8
Duzib248G0136 Durio zibethinus HOM05D004900 ORTHO05D006392 1.6e-113 412.9 231 83.5
Gohir.D13G039300 Gossypium hirsutum HOM05D004900 ORTHO05D006392 1.6e-113 412.9 231 82.3
Gorai.013G044200 Gossypium raimondii HOM05D004900 ORTHO05D006392 1.6e-113 412.9 231 82.3
FAN27G2168 Fragaria x ananassa HOM05D004900 ORTHO05D006392 6.2e-113 411.0 231 81.8
GSVIVG01031737001 Vitis vinifera HOM05D004900 ORTHO05D006392 6.2e-113 411.0 223 85.2
CsaV3_3G018610 Cucumis sativus L. HOM05D004900 ORTHO05D006392 8.0e-113 410.6 232 83.6
Cc02_g28520 Coffea canephora HOM05D004900 ORTHO05D006392 1.0e-112 410.2 231 82.7
Sc18g0004090 Simmondsia chinensis HOM05D004900 ORTHO05D006392 1.0e-112 410.2 232 80.6
Aqoxy6G01317 Aquilegia oxysepala HOM05D004900 ORTHO05D006392 1.8e-112 409.5 232 82.8
Thecc.02G101200 Theobroma cacao HOM05D004900 ORTHO05D006392 3.1e-112 408.7 231 83.1
Actinidia00438 Actinidia chinensis HOM05D004900 ORTHO05D006392 5.2e-112 407.9 231 81.0
EL10Ac4g08164 Beta vulgaris HOM05D004900 ORTHO05D006392 5.2e-112 407.9 231 80.5
AUR62034289 Chenopodium quinoa HOM05D004900 ORTHO05D006392 8.9e-112 407.1 231 81.0
Manes.10G071700 Manihot esculenta HOM05D004900 ORTHO05D006392 8.9e-112 407.1 231 81.4
Ciclev10028067m.g Citrus clementina HOM05D004900 ORTHO05D006392 1.2e-111 406.8 231 84.0
Ah.06g184040 Amaranthus hybridus HOM05D004900 ORTHO05D006392 2.6e-111 405.6 231 81.0
CSS0038145 Camellia sinensis var. sinensis HOM05D004900 ORTHO05D006392 3.4e-111 405.2 231 81.4
Cpa.g.sc62.8 Carica papaya HOM05D004900 ORTHO05D006392 4.4e-111 404.8 231 81.0
AUR62029383 Chenopodium quinoa HOM05D004900 ORTHO05D006392 5.8e-111 404.4 231 81.0
DCAR_029058 Daucus carota HOM05D004900 ORTHO05D006392 5.8e-111 404.4 231 81.4
Sed0000080 Sechium edule HOM05D004900 ORTHO05D006392 5.8e-111 404.4 232 81.9
MD05G1081500 Malus domestica HOM05D004900 ORTHO05D006392 9.8e-111 403.7 231 80.1
Ah.04g164910 Amaranthus hybridus HOM05D004900 ORTHO05D006392 1.3e-110 403.3 231 80.1
HanXRQChr04g0128191 Helianthus annuus HOM05D004900 ORTHO05D006392 1.7e-110 402.9 231 81.0
Lalb_Chr05g0219191 Lupinus albus HOM05D004900 ORTHO05D006392 3.7e-110 401.7 231 80.5
Nitab4.5_0018347g0010 Nicotiana tabacum HOM05D004900 ORTHO05D006392 3.7e-110 401.7 231 79.2
Psat7g123960 Pisum sativum HOM05D004900 ORTHO05D006392 4.9e-110 401.4 231 81.4
Potri.004G140800 Populus trichocarpa HOM05D004900 ORTHO05D006392 4.9e-110 401.4 231 78.8
Hund02212 Selenicereus undatus HOM05D004900 ORTHO05D006392 4.9e-110 401.4 231 80.5
Hund22922 Selenicereus undatus HOM05D004900 ORTHO05D006392 4.9e-110 401.4 232 81.0
COL.COLO4_32650 Corchorus olitorius HOM05D004900 ORTHO05D006392 6.4e-110 401.0 231 81.4
Nitab4.5_0005249g0010 Nicotiana tabacum HOM05D004900 ORTHO05D006392 1.1e-109 400.2 231 78.8
Oeu009747.1 Olea europaea HOM05D004900 ORTHO05D006392 1.1e-109 400.2 231 82.7
TWI31G0729 Tripterygium wilfordii HOM05D004900 ORTHO05D006392 1.1e-109 400.2 231 80.5
Ca_18688_v3 Cicer arietinum L. HOM05D004900 ORTHO05D006392 4.1e-109 398.3 231 80.1
Rhsim11G0165400 Rhododendron simsii HOM05D004900 ORTHO05D006392 5.4e-109 397.9 233 79.8
CAN.G1041.10 Capsicum annuum HOM05D004900 ORTHO05D006392 9.2e-109 397.1 231 79.2
HanXRQChr09g0259251 Helianthus annuus HOM05D004900 ORTHO05D006392 9.2e-109 397.1 231 79.2
arahy.Tifrunner.gnm1.ann1.AXQD4Y Arachis hypogaea HOM05D004900 ORTHO05D006392 1.2e-108 396.7 231 77.9
Medtr4g086020 Medicago truncatula HOM05D004900 ORTHO05D006392 1.6e-108 396.4 231 80.1
MSTRG.16738 Avicennia marina HOM05D004900 ORTHO05D006392 2.0e-108 396.0 231 79.2
ECA236G3626 Erigeron canadensis HOM05D004900 ORTHO05D006392 2.0e-108 396.0 231 79.7
PGSC0003DMG400008262 Solanum tuberosum HOM05D004900 ORTHO05D006392 2.7e-108 395.6 231 77.9
Sopen01g050850 Solanum pennellii HOM05D004900 ORTHO05D006392 4.6e-108 394.8 231 77.9
Peaxi162Scf00016g01734 Petunia axillaris HOM05D004900 ORTHO05D006392 6.0e-108 394.4 231 77.9
TPR.G25435 Trifolium pratense HOM05D004900 ORTHO05D006392 6.0e-108 394.4 231 79.7
Solyc01g108630.3 Solanum lycopersicum HOM05D004900 ORTHO05D006392 7.8e-108 394.0 231 77.9
CAN.G663.4 Capsicum annuum HOM05D004900 ORTHO05D006392 1.0e-107 393.7 231 77.9
VMungo0251G0630 Vigna mungo HOM05D004900 ORTHO05D006392 1.3e-107 393.3 232 80.2
arahy.Tifrunner.gnm1.ann1.X7K798 Arachis hypogaea HOM05D004900 ORTHO05D006392 2.3e-107 392.5 231 77.1
PGSC0003DMG400025823 Solanum tuberosum HOM05D004900 ORTHO05D006392 2.3e-107 392.5 231 77.1
Lj4g0002152 Lotus japonicus HOM05D004900 ORTHO05D006392 3.9e-107 391.7 228 81.1
PSO170G4054 Papaver somniferum HOM05D004900 ORTHO05D006392 3.9e-107 391.7 232 78.4
Lsat_1_v5_gn_7_86981 Lactuca sativa HOM05D004900 ORTHO05D006392 5.0e-107 391.3 231 78.8
Glyma.02G132100 Glycine max HOM05D004900 ORTHO05D006392 6.6e-107 391.0 231 79.2
Phvul.003G292100 Phaseolus vulgaris HOM05D004900 ORTHO05D006392 6.6e-107 391.0 231 80.5
CAN.G149.20 Capsicum annuum HOM05D004900 ORTHO05D006392 8.6e-107 390.6 231 77.5
Glyma.07G212800 Glycine max HOM05D004900 ORTHO05D006392 8.6e-107 390.6 231 78.4
Solyc10g050890.2 Solanum lycopersicum HOM05D004900 ORTHO05D006392 8.6e-107 390.6 231 77.1
Nitab4.5_0000876g0100 Nicotiana tabacum HOM05D004900 ORTHO05D006392 1.1e-106 390.2 231 77.1
PSO210G5341 Papaver somniferum HOM05D004900 ORTHO05D006392 1.1e-106 390.2 232 78.0
Sopen10g022530 Solanum pennellii HOM05D004900 ORTHO05D006392 1.1e-106 390.2 231 76.6
Sabra04G0092700 Salix brachista HOM05D004900 ORTHO05D006392 1.5e-106 389.8 231 76.2
THA.LOC104807271 Tarenaya hassleriana HOM05D004900 ORTHO05D006392 1.5e-106 389.8 232 76.7
Migut.B00351 Erythranthe guttata HOM05D004900 ORTHO05D006392 2.5e-106 389.0 231 78.8
CDE09G0425 Ceratophyllum demersum HOM05D004900 ORTHO05D006392 2.8e-105 385.6 232 77.2
THA.LOC104819578 Tarenaya hassleriana HOM05D004900 ORTHO05D006392 6.2e-105 384.4 231 75.3
Thhalv10022613m.g Eutrema salsugineum HOM05D004900 ORTHO05D006392 4.0e-104 381.7 231 77.9
A07p05130 Brassica napus HOM05D004900 ORTHO05D006392 5.8e-103 377.9 231 76.6
BraA07t28307Z Brassica rapa HOM05D004900 ORTHO05D006392 5.8e-103 377.9 231 76.6
CARHR105960 Cardamine hirsuta HOM05D004900 ORTHO05D006392 5.8e-103 377.9 231 75.8
C07p08190 Brassica napus HOM05D004900 ORTHO05D006392 7.5e-103 377.5 231 76.2
BolC7t41235H Brassica oleracea HOM05D004900 ORTHO05D006392 7.5e-103 377.5 231 76.2
AL3G47370 Arabidopsis lyrata HOM05D004900 ORTHO05D006392 9.8e-103 377.1 231 77.1
BcaB03g16309 Brassica carinata HOM05D004900 ORTHO05D006392 1.7e-102 376.3 231 75.8
Sp3g28890 Schrenkiella parvula HOM05D004900 ORTHO05D006392 2.9e-102 375.6 231 75.8
BcaC06g36073 Brassica carinata HOM05D004900 ORTHO05D006392 3.7e-102 375.2 231 75.8
Carub.0003s2939 Capsella rubella HOM05D004900 ORTHO05D006392 4.9e-102 374.8 231 75.8
BcaB07g31785 Brassica carinata HOM05D004900 ORTHO05D006392 6.4e-102 374.4 231 75.3
BcaC04g23043 Brassica carinata HOM05D004900 ORTHO05D006392 8.3e-102 374.0 231 75.3
C09p12780 Brassica napus HOM05D004900 ORTHO05D006392 8.3e-102 374.0 231 75.3
HPP92_004223 Vanilla planifolia HOM05D004900 ORTHO05D006392 8.3e-102 374.0 232 72.4
BolC9t54165H Brassica oleracea HOM05D004900 ORTHO05D006392 1.4e-101 373.2 231 74.9
BraA09t36723Z Brassica rapa HOM05D004900 ORTHO05D006392 3.2e-101 372.1 231 74.5
unitig_0.g85 Utricularia gibba HOM05D004900 ORTHO05D006392 3.2e-101 372.1 232 72.8
Aa31LG8G13280 Aethionema arabicum HOM05D004900 ORTHO05D006392 4.1e-101 371.7 231 74.0
A09p10810 Brassica napus HOM05D004900 ORTHO05D006392 7.1e-101 370.9 231 74.0
AT2G15620 Arabidopsis thaliana HOM05D004900 ORTHO05D006392 9.2e-101 370.5 231 75.3
HPP92_004227 Vanilla planifolia HOM05D004900 ORTHO05D006392 1.2e-100 370.2 232 72.0
Zm00001eb255880 Zea mays HOM05D004900 ORTHO05D006392 1.0e-99 367.1 233 73.4
Zm00001eb193660 Zea mays HOM05D004900 ORTHO05D006392 2.3e-99 365.9 233 73.0
SGA_v2.0_scaffold90G27642 Striga asiatica HOM05D004900 ORTHO05D006392 6.6e-99 364.4 219 74.4
Os01g0357100 Oryza sativa ssp. japonica HOM05D004900 ORTHO05D006392 1.4e-96 356.7 232 73.3
Gohir.A13G040600 Gossypium hirsutum HOM05D004900 ORTHO05D006392 1.8e-96 356.3 231 74.5
SEGI_39412 Sequoiadendron giganteum HOM05D004900 ORTHO05D006392 5.4e-93 344.7 224 71.4
ATR0009G021 Amborella trichopoda HOM05D004900 ORTHO05D006392 2.1e-92 342.8 230 71.3
TAR628G0128 Trochodendron aralioides HOM05D004900 ORTHO05D006392 2.1e-92 342.8 183 91.8
AagrBONN_evm.TU.Sc2ySwM_117.432 Anthoceros agrestis HOM05D004900 ORTHO05D006392 7.8e-84 314.3 223 67.3
SMO200G0071 Selaginella moellendorffii HOM05D004900 ORTHO05D006392 7.8e-84 314.3 221 68.3
Peaxi162Scf00003g01630 Petunia axillaris HOM05D004900 ORTHO05D006392 1.1e-82 310.5 186 76.9
CBR_g49893 Chara braunii HOM05D004900 ORTHO05D006392 1.2e-79 300.4 229 60.7
Mapoly0183s0004 Marchantia polymorpha HOM05D004900 ORTHO05D006392 1.7e-78 296.6 224 62.1
CiPaw.05G006800 Carya illinoinensis HOM05D004900 ORTHO05D006392 1.9e-74 283.1 218 66.5
Pp3c27_6610 Physcomitrium patens HOM05D004900 ORTHO05D006392 1.9e-74 283.1 224 58.5
Pp3c16_15880 Physcomitrium patens HOM05D004900 ORTHO05D006392 2.1e-73 279.6 224 56.7
Lsat_1_v5_gn_7_86961 Lactuca sativa HOM05D004900 ORTHO05D006392 6.9e-72 274.6 160 78.8
AagrBONN_evm.TU.Sc2ySwM_117.307 Anthoceros agrestis HOM05D004900 ORTHO05D006392 2.9e-70 269.2 223 59.2
MCO01G555 Micromonas commoda HOM05D004900 ORTHO05D006392 3.3e-58 229.2 236 49.6
vmacro02045 Vaccinium macrocarpon HOM05D004900 ORTHO05D006392 3.8e-54 215.7 233 50.6
Cre09.g410750 Chlamydomonas reinhardtii HOM05D004900 ORTHO05D006392 2.7e-52 209.5 211 47.9
PRCOL_00002965 Prasinoderma coloniale HOM05D004900 ORTHO05D001484 2.6e-47 193.0 209 48.3
PRCOL_00004550 Prasinoderma coloniale HOM05D004900 ORTHO05D006392 2.6e-47 193.0 209 47.8
Nitab4.5_0001401g0030 Nicotiana tabacum HOM05D004900 ORTHO05D006392 6.5e-38 161.8 217 42.4
Dinv42160 Davidia involucrata HOM05D004900 ORTHO05D006392 1.9e-21 107.1 56 83.9
Cfa021071 Carpinus fangiana HOM05D004900 ORTHO05D006392 2.3e-14 83.6 178 25.8
Potri.001G257000 Populus trichocarpa HOM05D004275 ORTHO05D005720 2.2e-09 67.0 161 31.7
AagrBONN_evm.TU.Sc2ySwM_368.1754 Anthoceros agrestis HOM05D004275 ORTHO05D005720 2.8e-09 66.6 158 29.7
Sabra09G0038300 Salix brachista HOM05D004275 ORTHO05D005720 2.8e-09 66.6 161 31.1
Dinv22171 Davidia involucrata HOM05D004275 ORTHO05D005720 3.7e-09 66.2 159 29.6
Potri.009G052600 Populus trichocarpa HOM05D004275 ORTHO05D005720 4.9e-09 65.9 161 29.8
Cc01_g04520 Coffea canephora HOM05D004275 ORTHO05D005720 6.3e-09 65.5 202 28.7
PRCOL_00002318 Prasinoderma coloniale HOM05D004275 ORTHO05D005720 6.3e-09 65.5 199 29.1
Solyc11g065620.2 Solanum lycopersicum HOM05D004275 ORTHO05D005720 6.3e-09 65.5 161 30.4
Sopen11g025340 Solanum pennellii HOM05D004275 ORTHO05D005720 6.3e-09 65.5 161 30.4
PGSC0003DMG400010304 Solanum tuberosum HOM05D004275 ORTHO05D005720 6.3e-09 65.5 161 30.4
Ah.06g194090 Amaranthus hybridus HOM05D004275 ORTHO05D005720 8.3e-09 65.1 160 28.8
Actinidia16339 Actinidia chinensis HOM05D004275 ORTHO05D005720 1.1e-08 64.7 161 29.8
CAN.G1114.4 Capsicum annuum HOM05D004275 ORTHO05D005720 1.1e-08 64.7 204 28.9
Manes.14G003400 Manihot esculenta HOM05D004275 ORTHO05D005720 2.4e-08 63.5 160 30.0
Sed0004479 Sechium edule HOM05D004275 ORTHO05D005720 2.4e-08 63.5 161 28.6
Rhsim13G0220600 Rhododendron simsii HOM05D004275 ORTHO05D005720 9.2e-08 61.6 160 29.4
Sabra16G0155700 Salix brachista HOM05D004275 ORTHO05D005720 9.2e-08 61.6 178 28.7
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 1.6e-07 60.8 160 27.5
Dinv36252 Davidia involucrata HOM05D004275 ORTHO05D005720 2.7e-07 60.1 161 29.8
Os05g0503300 Oryza sativa ssp. japonica HOM05D004275 ORTHO05D005720 7.8e-07 58.5 221 24.9
SEGI_34448 Sequoiadendron giganteum HOM05D004275 ORTHO05D005720 7.8e-07 58.5 161 29.8
Actinidia06913 Actinidia chinensis HOM05D004275 ORTHO05D005720 8.6e-06 55.1 155 29.7


User provided reference genes

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