Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1022 Trochodendron aralioides HOM05D004633 ORTHO05D005503 1.3e-34 149.1 68 100.0
SalBow5G0679 Salvia bowleyana HOM05D004633 ORTHO05D005503 5.5e-14 80.5 60 68.3
TAR376G0286 Trochodendron aralioides HOM05D004633 ORTHO05D005503 2.7e-13 78.2 43 86.0
GSVIVG01022068001 Vitis vinifera HOM05D004633 ORTHO05D005503 4.7e-13 77.4 43 83.7
MSTRG.3439 Avicennia marina HOM05D004633 ORTHO05D005503 6.1e-13 77.0 43 83.7
Haze_15364 Corylus avellana HOM05D004633 ORTHO05D005503 6.1e-13 77.0 46 78.3
Lsat_1_v5_gn_4_164460 Lactuca sativa HOM05D004633 ORTHO05D005503 6.1e-13 77.0 43 83.7
CSS0046694 Camellia sinensis var. sinensis HOM05D004633 ORTHO05D005503 1.0e-12 76.3 43 81.4
Cc07_g06290 Coffea canephora HOM05D004633 ORTHO05D005503 1.0e-12 76.3 43 81.4
Dinv30022 Davidia involucrata HOM05D004633 ORTHO05D005503 1.0e-12 76.3 43 81.4
Lj7A74G30 Lonicera japonica HOM05D004633 ORTHO05D005503 1.0e-12 76.3 63 63.5
SGA_v2.0_scaffold10G05122 Striga asiatica HOM05D004633 ORTHO05D005503 1.0e-12 76.3 43 81.4
Cpa.g.sc55.107 Carica papaya HOM05D004633 ORTHO05D005503 1.4e-12 75.9 43 81.4
Cfa004047 Carpinus fangiana HOM05D004633 ORTHO05D005503 1.4e-12 75.9 46 76.1
Ca_22131_v3 Cicer arietinum L. HOM05D004633 ORTHO05D005503 1.4e-12 75.9 43 81.4
Migut.L00177 Erythranthe guttata HOM05D004633 ORTHO05D005503 1.4e-12 75.9 43 81.4
ECA246G0986 Erigeron canadensis HOM05D004633 ORTHO05D005503 1.8e-12 75.5 43 81.4
Thhalv10004143m.g Eutrema salsugineum HOM05D004633 ORTHO05D005503 1.8e-12 75.5 43 81.4
Sp2g29450 Schrenkiella parvula HOM05D004633 ORTHO05D005503 1.8e-12 75.5 43 81.4
unitig_0.g2631 Utricularia gibba HOM05D004633 ORTHO05D005503 1.8e-12 75.5 43 83.7
PGR102G1926 Punica granatum HOM05D004633 ORTHO05D005503 2.3e-12 75.1 43 81.4
TPR.G14594 Trifolium pratense HOM05D004633 ORTHO05D005503 2.3e-12 75.1 43 79.1
Phvul.003G241100 Phaseolus vulgaris HOM05D004633 ORTHO05D005503 3.0e-12 74.7 43 79.1
SHI29406 Sapria himalayana HOM05D004633 ORTHO05D005503 3.0e-12 74.7 43 81.4
VMungo0251G3622 Vigna mungo HOM05D004633 ORTHO05D005503 3.0e-12 74.7 43 79.1
Aa31LG1G15750 Aethionema arabicum HOM05D004633 ORTHO05D005503 4.0e-12 74.3 43 81.4
AL8G44120 Arabidopsis lyrata HOM05D004633 ORTHO05D005503 4.0e-12 74.3 43 79.1
AT5G67220 Arabidopsis thaliana HOM05D004633 ORTHO05D005503 4.0e-12 74.3 43 79.1
BcaB04g20070 Brassica carinata HOM05D004633 ORTHO05D005503 4.0e-12 74.3 43 79.1
Carub.0008s2729 Capsella rubella HOM05D004633 ORTHO05D005503 4.0e-12 74.3 43 79.1
CARHR280410 Cardamine hirsuta HOM05D004633 ORTHO05D005503 4.0e-12 74.3 43 79.1
Psat4g085040 Pisum sativum HOM05D004633 ORTHO05D005503 4.0e-12 74.3 43 79.1
vmacro17967 Vaccinium macrocarpon HOM05D004633 ORTHO05D005503 4.0e-12 74.3 43 79.1
BcaC04g23204 Brassica carinata HOM05D004633 ORTHO05D005503 5.2e-12 73.9 43 76.7
A09p09480 Brassica napus HOM05D004633 ORTHO05D005503 5.2e-12 73.9 43 76.7
C09p11170 Brassica napus HOM05D004633 ORTHO05D005503 5.2e-12 73.9 43 76.7
BraA09t36596Z Brassica rapa HOM05D004633 ORTHO05D005503 5.2e-12 73.9 43 76.7
CiPaw.01G014400 Carya illinoinensis HOM05D004633 ORTHO05D005503 5.2e-12 73.9 43 76.7
Dinv26852 Davidia involucrata HOM05D004633 ORTHO05D005503 5.2e-12 73.9 46 73.9
Duzib147G0002 Durio zibethinus HOM05D004633 ORTHO05D005503 5.2e-12 73.9 43 76.7
MD15G1287200 Malus domestica HOM05D004633 ORTHO05D005503 5.2e-12 73.9 43 79.1
Prupe.6G230700 Prunus persica HOM05D004633 ORTHO05D005503 5.2e-12 73.9 43 79.1
Glyma.05G096300 Glycine max HOM05D004633 ORTHO05D005503 6.8e-12 73.6 43 76.7
Glyma.17G169000 Glycine max HOM05D004633 ORTHO05D005503 6.8e-12 73.6 43 76.7
Manes.12G107300 Manihot esculenta HOM05D004633 ORTHO05D005503 6.8e-12 73.6 43 76.7
Nn1g04752 Nelumbo nucifera HOM05D004633 ORTHO05D005503 6.8e-12 73.6 43 79.1
Peaxi162Scf00365g00413 Petunia axillaris HOM05D004633 ORTHO05D005503 6.8e-12 73.6 43 79.1
QL06p040312 Quercus lobata HOM05D004633 ORTHO05D005503 6.8e-12 73.6 43 76.7
Solyc03g044270.3 Solanum lycopersicum HOM05D004633 ORTHO05D005503 6.8e-12 73.6 43 81.4
Sopen03g008320 Solanum pennellii HOM05D004633 ORTHO05D005503 6.8e-12 73.6 43 81.4
FvH4_1g16470 Fragaria vesca HOM05D004633 ORTHO05D005503 8.8e-12 73.2 43 76.7
FAN19G2847 Fragaria x ananassa HOM05D004633 ORTHO05D005503 8.8e-12 73.2 43 76.7
FAN28G1894 Fragaria x ananassa HOM05D004633 ORTHO05D005503 8.8e-12 73.2 43 76.7
FAN28G2116 Fragaria x ananassa HOM05D004633 ORTHO05D005503 8.8e-12 73.2 43 76.7
Hma1.2p1_0017F.1_g011780 Hydrangea macrophylla HOM05D004633 ORTHO05D005503 8.8e-12 73.2 43 76.7
Lalb_Chr05g0226241 Lupinus albus HOM05D004633 ORTHO05D005503 8.8e-12 73.2 43 76.7
Manes.13G119720 Manihot esculenta HOM05D004633 ORTHO05D005503 8.8e-12 73.2 43 76.7
Potri.007G047300 Populus trichocarpa HOM05D004633 ORTHO05D005503 8.8e-12 73.2 43 76.7
Rhsim08G0098400 Rhododendron simsii HOM05D004633 ORTHO05D005503 8.8e-12 73.2 43 76.7
RcHm_v2.0_Chr2g0106351 Rosa chinensis HOM05D004633 ORTHO05D005503 8.8e-12 73.2 43 76.7
Sabra07G0042200 Salix brachista HOM05D004633 ORTHO05D005503 8.8e-12 73.2 43 76.7
PGSC0003DMG400006483 Solanum tuberosum HOM05D004633 ORTHO05D005503 8.8e-12 73.2 43 81.4
TWI73G0624 Tripterygium wilfordii HOM05D004633 ORTHO05D005503 8.8e-12 73.2 43 76.7
Atru.chr3.268 Acer truncatum HOM05D004633 ORTHO05D005503 1.2e-11 72.8 43 76.7
BolC9t54006H Brassica oleracea HOM05D004633 ORTHO05D005503 1.2e-11 72.8 43 74.4
ClCG02G008020 Citrullus lanatus HOM05D004633 ORTHO05D005503 1.2e-11 72.8 43 76.7
COL.COLO4_11464 Corchorus olitorius HOM05D004633 ORTHO05D005503 1.2e-11 72.8 43 76.7
CsaV3_2G035640 Cucumis sativus L. HOM05D004633 ORTHO05D005503 1.2e-11 72.8 43 76.7
Eucgr.H02218 Eucalyptus grandis HOM05D004633 ORTHO05D005503 1.2e-11 72.8 43 76.7
Eucgr.L01089 Eucalyptus grandis HOM05D004633 ORTHO05D005503 1.2e-11 72.8 43 76.7
Sed0006372 Sechium edule HOM05D004633 ORTHO05D005503 1.2e-11 72.8 43 76.7
Sed0019372 Sechium edule HOM05D004633 ORTHO05D005503 1.2e-11 72.8 43 76.7
arahy.Tifrunner.gnm1.ann1.H6KR5I Arachis hypogaea HOM05D004633 ORTHO05D005503 1.5e-11 72.4 43 76.7
arahy.Tifrunner.gnm1.ann1.ZUJJ2F Arachis hypogaea HOM05D004633 ORTHO05D005503 1.5e-11 72.4 43 76.7
CAN.G82.14 Capsicum annuum HOM05D004633 ORTHO05D005503 1.5e-11 72.4 41 82.9
DCAR_010863 Daucus carota HOM05D004633 ORTHO05D005503 1.5e-11 72.4 43 79.1
Lsat_1_v5_gn_3_90261 Lactuca sativa HOM05D004633 ORTHO05D005503 1.5e-11 72.4 43 76.7
THA.LOC104819242 Tarenaya hassleriana HOM05D004633 ORTHO05D005503 1.5e-11 72.4 43 79.1
Zm00001eb227810 Zea mays HOM05D004633 ORTHO05D005503 1.5e-11 72.4 43 76.7
CANSAT25G1160 Cannabis sativa HOM05D004633 ORTHO05D005503 2.0e-11 72.0 43 76.7
MELO3C024784.2 Cucumis melo HOM05D004633 ORTHO05D005503 2.0e-11 72.0 43 76.7
FAN23G1966 Fragaria x ananassa HOM05D004633 ORTHO05D005503 2.0e-11 72.0 43 76.7
FAN26G1576 Fragaria x ananassa HOM05D004633 ORTHO05D005503 2.0e-11 72.0 43 74.4
Lj4g0002857 Lotus japonicus HOM05D004633 ORTHO05D005503 2.0e-11 72.0 43 74.4
Nitab4.5_0000929g0040 Nicotiana tabacum HOM05D004633 ORTHO05D005503 2.0e-11 72.0 43 76.7
HPP92_012974 Vanilla planifolia HOM05D004633 ORTHO05D005503 2.0e-11 72.0 43 76.7
Ciclev10025630m.g Citrus clementina HOM05D004633 ORTHO05D005503 2.6e-11 71.6 41 75.6
Gohir.A02G155700 Gossypium hirsutum HOM05D004633 ORTHO05D005503 2.6e-11 71.6 43 74.4
Gohir.D03G024900 Gossypium hirsutum HOM05D004633 ORTHO05D005503 2.6e-11 71.6 43 74.4
Gorai.003G026500 Gossypium raimondii HOM05D004633 ORTHO05D005503 2.6e-11 71.6 43 74.4
HanXRQChr15g0490881 Helianthus annuus HOM05D004633 ORTHO05D005503 2.6e-11 71.6 43 76.7
Actinidia16468 Actinidia chinensis HOM05D004633 ORTHO05D005503 3.4e-11 71.2 43 74.4
HanXRQChr11g0328291 Helianthus annuus HOM05D004633 ORTHO05D005503 3.4e-11 71.2 43 76.7
HanXRQChr11g0348441 Helianthus annuus HOM05D004633 ORTHO05D005503 3.4e-11 71.2 43 74.4
Medtr4g094905 Medicago truncatula HOM05D004633 ORTHO05D005503 3.4e-11 71.2 43 72.1
Thecc.01G061800 Theobroma cacao HOM05D004633 ORTHO05D005503 3.4e-11 71.2 43 72.1
EL10Ac6g15705 Beta vulgaris HOM05D004633 ORTHO05D005503 4.4e-11 70.9 43 76.7
AUR62003922 Chenopodium quinoa HOM05D004633 ORTHO05D005503 4.4e-11 70.9 43 76.7
AUR62038236 Chenopodium quinoa HOM05D004633 ORTHO05D005503 4.4e-11 70.9 43 76.7
Solyc02g093060.3 Solanum lycopersicum HOM05D004633 ORTHO05D005503 5.7e-11 70.5 41 75.6
Sopen02g037630 Solanum pennellii HOM05D004633 ORTHO05D005503 5.7e-11 70.5 41 75.6
PGSC0003DMG400024962 Solanum tuberosum HOM05D004633 ORTHO05D005503 5.7e-11 70.5 41 75.6
THA.LOC104821245 Tarenaya hassleriana HOM05D004633 ORTHO05D005503 5.7e-11 70.5 43 76.7
CDE01G0097 Ceratophyllum demersum HOM05D001708 ORTHO05D001649 7.5e-11 70.1 56 57.1
CDE02G1921 Ceratophyllum demersum HOM05D004633 ORTHO05D005503 9.8e-11 69.7 43 74.4
Peaxi162Scf00549g00221 Petunia axillaris HOM05D004633 ORTHO05D005503 9.8e-11 69.7 43 76.7
Hund13907 Selenicereus undatus HOM05D004633 ORTHO05D005503 9.8e-11 69.7 41 78.0
BcaB02g09941 Brassica carinata HOM05D004633 ORTHO05D005503 2.2e-10 68.6 43 72.1
BcaC06g34804 Brassica carinata HOM05D004633 ORTHO05D005503 2.2e-10 68.6 43 72.1
A07p16750 Brassica napus HOM05D004633 ORTHO05D005503 2.2e-10 68.6 43 72.1
C07p24480 Brassica napus HOM05D004633 ORTHO05D005503 2.2e-10 68.6 43 72.1
BolC7t42968H Brassica oleracea HOM05D004633 ORTHO05D005503 2.2e-10 68.6 43 72.1
BraA07t29400Z Brassica rapa HOM05D004633 ORTHO05D005503 2.2e-10 68.6 43 72.1
CAN.G370.28 Capsicum annuum HOM05D004633 ORTHO05D005503 2.2e-10 68.6 43 74.4
Os06g0712900 Oryza sativa ssp. japonica HOM05D004633 ORTHO05D005503 2.2e-10 68.6 43 72.1
ATR0001G042 Amborella trichopoda HOM05D004633 ORTHO05D005503 2.8e-10 68.2 43 74.4
Aqoxy5G01172 Aquilegia oxysepala HOM05D004633 ORTHO05D005503 2.8e-10 68.2 43 74.4
SMO169G0138 Selaginella moellendorffii HOM05D004633 ORTHO05D005503 3.1e-09 64.7 43 67.4
Actinidia03804 Actinidia chinensis HOM05D004633 ORTHO05D005503 5.4e-09 63.9 43 67.4
ECA246G1233 Erigeron canadensis HOM05D004633 ORTHO05D005503 9.1e-09 63.2 43 65.1
CBR_g36684 Chara braunii HOM05D004633 ORTHO05D005503 1.2e-08 62.8 43 65.1
HanXRQChr15g0473611 Helianthus annuus HOM05D004633 ORTHO05D005503 2.7e-08 61.6 41 65.9
Nn5g30384 Nelumbo nucifera HOM05D004633 ORTHO05D005503 2.7e-08 61.6 31 87.1
Mapoly0048s0005 Marchantia polymorpha HOM05D004633 ORTHO05D005503 3.5e-08 61.2 41 63.4
Pp3c3_25920 Physcomitrium patens HOM05D004633 ORTHO05D005503 5.9e-08 60.5 41 63.4
SEGI_00124 Sequoiadendron giganteum HOM05D004633 ORTHO05D005503 7.7e-08 60.1 43 65.1
SEGI_29602 Sequoiadendron giganteum HOM05D004633 ORTHO05D005503 7.7e-08 60.1 43 65.1
Mapoly0125s0018 Marchantia polymorpha HOM05D004633 ORTHO05D005503 1.3e-07 59.3 43 60.5
Pp3c8_25410 Physcomitrium patens HOM05D004633 ORTHO05D005503 1.7e-07 58.9 52 55.8
Cre12.g486900 Chlamydomonas reinhardtii HOM05D004633 ORTHO05D005503 2.9e-07 58.2 46 56.5
Pp3c13_19950 Physcomitrium patens HOM05D004633 ORTHO05D005503 6.6e-07 57.0 43 62.8


User provided reference genes

Program Settings