Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 6.8e-243 843.6 427 100.0
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 6.7e-174 614.4 427 73.5
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 7.2e-168 594.3 425 70.8
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 2.3e-166 589.3 392 75.3
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 3.0e-166 589.0 427 69.6
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 5.1e-166 588.2 425 71.1
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 1.2e-162 577.0 426 68.5
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 2.0e-162 576.2 426 70.0
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.3e-161 573.5 427 67.7
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 2.9e-161 572.4 425 69.4
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 2.9e-161 572.4 427 67.4
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 5.0e-161 571.6 426 69.2
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 9.4e-160 567.4 426 68.1
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 7.9e-159 564.3 400 69.2
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 2.0e-157 559.7 426 67.1
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 5.7e-157 558.1 425 67.1
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 1.4e-155 553.5 426 67.4
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 1.2e-154 550.4 426 65.5
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 4.7e-151 538.5 418 65.6
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 8.0e-151 537.7 425 66.1
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 1.4e-147 526.9 399 65.2
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 4.5e-146 521.9 427 63.5
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 5.0e-145 518.5 405 63.7
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 1.5e-144 516.9 428 63.3
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 6.1e-143 511.5 427 60.9
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 8.0e-143 511.1 395 64.6
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 3.0e-142 509.2 397 65.0
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 5.7e-141 505.0 430 62.8
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 1.3e-140 503.8 376 68.9
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 6.3e-140 501.5 391 65.2
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 8.2e-140 501.1 401 61.8
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 1.4e-139 500.4 384 65.4
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 4.1e-139 498.8 397 63.7
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 4.1e-139 498.8 395 64.6
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 5.3e-139 498.4 390 65.1
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 7.0e-139 498.0 398 62.8
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 9.1e-139 497.7 385 66.5
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 9.1e-139 497.7 433 61.0
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 1.2e-138 497.3 448 60.7
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 5.9e-138 495.0 399 62.4
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 7.7e-138 494.6 460 59.6
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 1.0e-137 494.2 390 64.4
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 2.2e-137 493.0 395 61.8
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 2.2e-137 493.0 404 60.9
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 5.0e-137 491.9 385 64.9
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 6.5e-137 491.5 390 62.6
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 3.2e-136 489.2 397 63.7
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 4.2e-136 488.8 390 63.1
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 1.2e-135 487.3 404 60.1
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 5.2e-134 481.9 407 63.1
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 3.4e-133 479.2 373 65.1
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 4.4e-133 478.8 385 63.1
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 9.8e-133 477.6 386 61.4
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 2.8e-132 476.1 386 61.1
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 1.4e-131 473.8 389 62.2
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 5.9e-130 468.4 431 57.5
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 7.7e-130 468.0 428 57.0
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 8.6e-129 464.5 393 62.1
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 9.5e-128 461.1 389 59.6
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 2.1e-127 459.9 389 59.9
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 2.3e-126 456.4 391 57.8
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 1.5e-125 453.8 448 56.2
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 3.4e-125 452.6 392 58.4
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 1.3e-124 450.7 380 62.6
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 8.3e-124 448.0 355 62.3
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 5.4e-123 445.3 415 58.3
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 1.6e-122 443.7 425 55.8
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 2.0e-122 443.4 431 55.5
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 1.0e-118 431.0 321 67.6
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.0e-117 426.8 351 65.8
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 2.9e-116 422.9 332 66.0
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 3.9e-113 412.5 416 53.4
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 5.0e-113 412.1 386 55.4
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 6.8e-110 401.7 385 56.4
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 3.4e-109 399.4 411 55.7
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 1.3e-108 397.5 385 54.0
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 1.7e-108 397.1 385 54.5
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 6.4e-108 395.2 373 55.2
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 1.1e-107 394.4 287 68.3
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 2.7e-106 389.8 383 58.5
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 4.6e-106 389.0 389 53.2
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 6.6e-105 385.2 385 53.8
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 1.5e-104 384.0 385 54.3
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 4.7e-103 379.0 385 52.5
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 4.7e-103 379.0 337 59.1
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 1.1e-102 377.9 385 53.0
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 6.8e-102 375.2 385 52.2
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.2e-101 374.4 337 58.2
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 1.5e-101 374.0 385 52.5
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 7.5e-101 371.7 385 52.2
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 1.3e-100 370.9 385 52.2
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 2.2e-100 370.2 385 52.2
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 2.2e-100 370.2 423 48.5
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 8.3e-100 368.2 385 51.4
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 1.6e-98 364.0 385 51.4
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 4.9e-92 342.4 401 49.9
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 1.2e-90 337.8 407 47.4
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 3.0e-89 333.2 407 46.7
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 1.9e-83 313.9 332 51.8
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 2.4e-83 313.5 375 48.5
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 2.1e-82 310.5 308 53.2
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 2.5e-80 303.5 305 55.4
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 2.5e-80 303.5 319 51.7
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 7.9e-74 282.0 356 47.2
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 3.7e-71 273.1 423 40.4
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 7.4e-64 248.8 358 43.3
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 4.8e-63 246.1 407 38.3
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 1.1e-56 224.9 251 49.0
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 4.8e-55 219.5 161 73.9
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 5.9e-53 212.6 337 38.9
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 3.3e-48 196.8 188 55.3
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 3.3e-40 170.2 195 49.7
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 5.7e-40 169.5 396 33.1
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 2.2e-39 167.5 178 53.4
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 2.0e-37 161.0 151 53.0
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.0e-37 161.0 108 81.5
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 2.2e-36 157.5 382 32.2
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 4.7e-34 149.8 347 31.7
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 1.0e-33 148.7 166 52.4
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 1.0e-33 148.7 166 52.4
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 2.6e-32 144.1 151 49.0
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 4.4e-32 143.3 111 60.4
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.0e-28 132.1 73 86.3
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 8.5e-28 129.0 104 67.3
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 2.5e-27 127.5 197 40.1
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 3.2e-27 127.1 123 49.6
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 2.7e-26 124.0 96 64.6
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 8.0e-26 122.5 88 70.5
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.6e-21 108.2 67 79.1
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 1.7e-20 104.8 113 51.3
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 2.7e-13 80.9 65 60.0
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 2.7e-13 80.9 65 60.0
Pp3s34_123 Physcomitrium patens HOM05D003546 ORTHO05D005667 8.0e-10 69.3 261 24.5
QL04p035577 Quercus lobata HOM05D005911 ORTHO05D007565 1.5e-08 65.1 68 52.9
QL04p046160 Quercus lobata HOM05D005911 ORTHO05D338257 3.4e-08 63.9 68 51.5
QL11p051325 Quercus lobata HOM05D005911 ORTHO05D007565 1.7e-07 61.6 42 76.2
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 1.1e-06 58.9 191 26.7


User provided reference genes

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