Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1000 Trochodendron aralioides HOM05D002332 ORTHO05D002509 3.0e-87 325.1 156 100.0
Nn4g24734 Nelumbo nucifera HOM05D002332 ORTHO05D002509 5.5e-17 91.7 70 67.1
Nn1g04830 Nelumbo nucifera HOM05D002332 ORTHO05D002509 6.1e-16 88.2 70 65.7
Hma1.2p1_0360F.1_g135610 Hydrangea macrophylla HOM05D002332 ORTHO05D002509 3.3e-14 82.4 55 72.7
Lj4A60G15 Lonicera japonica HOM05D002332 ORTHO05D002509 7.4e-14 81.3 52 73.1
CiPaw.05G179300 Carya illinoinensis HOM05D002332 ORTHO05D002509 2.2e-13 79.7 52 71.2
CiPaw.16G042300 Carya illinoinensis HOM05D002332 ORTHO05D002509 2.2e-13 79.7 52 71.2
MBI08_g39927_MAGBIO Magnolia biondii HOM05D002332 ORTHO05D002509 8.2e-13 77.8 57 63.2
Actinidia23289 Actinidia chinensis HOM05D002332 ORTHO05D002509 1.1e-12 77.4 52 69.2
PSO675G4923 Papaver somniferum HOM05D002332 ORTHO05D002509 1.1e-12 77.4 70 54.3
Rhsim06G0051400 Rhododendron simsii HOM05D002332 ORTHO05D002509 1.1e-12 77.4 52 69.2
Dinv39304 Davidia involucrata HOM05D002332 ORTHO05D002509 3.1e-12 75.9 55 63.6
PSO541G3218 Papaver somniferum HOM05D002332 ORTHO05D002509 3.1e-12 75.9 70 54.3
GSVIVG01009478001 Vitis vinifera HOM05D002332 ORTHO05D002509 4.1e-12 75.5 52 71.2
Dinv35945 Davidia involucrata HOM05D002332 ORTHO05D002509 5.3e-12 75.1 55 67.3
Nitab4.5_0003677g0020 Nicotiana tabacum HOM05D002332 ORTHO05D002509 7.0e-12 74.7 56 60.7
Haze_18030 Corylus avellana HOM05D002332 ORTHO05D002509 9.1e-12 74.3 52 65.4
DCAR_011828 Daucus carota HOM05D002332 ORTHO05D002509 9.1e-12 74.3 52 67.3
vmacro21505 Vaccinium macrocarpon HOM05D002332 ORTHO05D002509 9.1e-12 74.3 50 66.0
Nitab4.5_0000287g0170 Nicotiana tabacum HOM05D002332 ORTHO05D002509 1.6e-11 73.6 56 58.9
Potri.014G027200 Populus trichocarpa HOM05D002332 ORTHO05D002509 2.0e-11 73.2 56 64.3
Cc10_g04520 Coffea canephora HOM05D002332 ORTHO05D002509 2.6e-11 72.8 55 61.8
TWI36G1206 Tripterygium wilfordii HOM05D002332 ORTHO05D002509 2.6e-11 72.8 53 64.2
Cfa018082 Carpinus fangiana HOM05D002332 ORTHO05D002509 3.5e-11 72.4 52 63.5
Sabra14G0018600 Salix brachista HOM05D002332 ORTHO05D002509 3.5e-11 72.4 56 64.3
Lj1g0004747 Lotus japonicus HOM05D002332 ORTHO05D002509 7.7e-11 71.2 53 62.3
Lj5g0014115 Lotus japonicus HOM05D002332 ORTHO05D002509 1.0e-10 70.9 53 62.3
COL.COLO4_26530 Corchorus olitorius HOM05D002332 ORTHO05D002509 1.3e-10 70.5 55 63.6
Migut.C00568 Erythranthe guttata HOM05D002332 ORTHO05D002509 1.3e-10 70.5 55 58.2
THA.LOC104798895 Tarenaya hassleriana HOM05D002332 ORTHO05D002509 1.3e-10 70.5 53 60.4
Duzib093G1319 Durio zibethinus HOM05D002332 ORTHO05D002509 1.7e-10 70.1 55 61.8
MSTRG.25068 Avicennia marina HOM05D002332 ORTHO05D002509 2.2e-10 69.7 55 60.0
Oeu012425.1 Olea europaea HOM05D002332 ORTHO05D002509 2.2e-10 69.7 59 61.0
Cpa.g.sc65.26 Carica papaya HOM05D002332 ORTHO05D002509 2.9e-10 69.3 52 59.6
Gohir.A06G019300 Gossypium hirsutum HOM05D002332 ORTHO05D002509 2.9e-10 69.3 52 63.5
Gohir.D06G017700 Gossypium hirsutum HOM05D002332 ORTHO05D002509 2.9e-10 69.3 52 63.5
Gorai.010G020600 Gossypium raimondii HOM05D002332 ORTHO05D002509 2.9e-10 69.3 52 63.5
Medtr1g034785 Medicago truncatula HOM05D002332 ORTHO05D002509 2.9e-10 69.3 57 59.6
QL02p004496 Quercus lobata HOM05D002332 ORTHO05D002509 2.9e-10 69.3 52 63.5
QL06p048778 Quercus lobata HOM05D002332 ORTHO05D002509 2.9e-10 69.3 52 63.5
TAR625G1294 Trochodendron aralioides HOM05D002332 ORTHO05D002509 3.8e-10 68.9 57 64.9
AL5G28900 Arabidopsis lyrata HOM05D002332 ORTHO05D002509 6.5e-10 68.2 56 57.1
Solyc04g078780.3 Solanum lycopersicum HOM05D002332 ORTHO05D002509 6.5e-10 68.2 55 60.0
Sopen04g032380 Solanum pennellii HOM05D002332 ORTHO05D002509 6.5e-10 68.2 55 60.0
PGSC0003DMG400007963 Solanum tuberosum HOM05D002332 ORTHO05D002509 6.5e-10 68.2 55 60.0
Ca_12501_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 1.1e-09 67.4 56 55.4
Ca_25727_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 1.1e-09 67.4 56 55.4
Eucgr.F02332 Eucalyptus grandis HOM05D002332 ORTHO05D002509 1.1e-09 67.4 52 59.6
MD15G1081000 Malus domestica HOM05D002332 ORTHO05D002509 1.5e-09 67.0 53 58.5
Phvul.008G025800 Phaseolus vulgaris HOM05D002332 ORTHO05D002509 1.5e-09 67.0 57 59.6
Thecc.08G005100 Theobroma cacao HOM05D002332 ORTHO05D002509 1.9e-09 66.6 55 58.2
Glyma.08G252500 Glycine max HOM05D002332 ORTHO05D002509 2.5e-09 66.2 55 58.2
SGA_v2.0_scaffold62G21510 Striga asiatica HOM05D002332 ORTHO05D002509 2.5e-09 66.2 55 56.4
AT3G49180 Arabidopsis thaliana HOM05D002332 ORTHO05D002509 3.2e-09 65.9 56 53.6
CARHR158060 Cardamine hirsuta HOM05D002332 ORTHO05D002509 3.2e-09 65.9 53 58.5
Thhalv10010392m.g Eutrema salsugineum HOM05D002332 ORTHO05D002509 3.2e-09 65.9 53 58.5
Sp5g12890 Schrenkiella parvula HOM05D002332 ORTHO05D002509 3.2e-09 65.9 53 58.5
Carub.0005s1541 Capsella rubella HOM05D002332 ORTHO05D002509 4.2e-09 65.5 53 56.6
Glyma.18G275100 Glycine max HOM05D002332 ORTHO05D002509 4.2e-09 65.5 55 58.2
Phvul.005G174300 Phaseolus vulgaris HOM05D002332 ORTHO05D002509 4.2e-09 65.5 57 57.9
Peaxi162Scf00458g00325 Petunia axillaris HOM05D002332 ORTHO05D002509 5.5e-09 65.1 55 54.5
TPR.G22366 Trifolium pratense HOM05D002332 ORTHO05D002509 5.5e-09 65.1 53 58.5
arahy.Tifrunner.gnm1.ann1.IZUT4R Arachis hypogaea HOM05D002332 ORTHO05D002509 7.2e-09 64.7 52 59.6
EL10Ac3g06747 Beta vulgaris HOM05D002332 ORTHO05D002509 7.2e-09 64.7 52 55.8
Manes.18G038500 Manihot esculenta HOM05D002332 ORTHO05D002509 9.4e-09 64.3 52 57.7
CDE05G3508 Ceratophyllum demersum HOM05D002332 ORTHO05D002509 1.2e-08 63.9 74 45.9
Medtr7g016970 Medicago truncatula HOM05D002332 ORTHO05D002509 1.2e-08 63.9 50 58.0
Phvul.005G107100 Phaseolus vulgaris HOM05D002332 ORTHO05D002509 1.6e-08 63.5 57 56.1
SalBow7G2328 Salvia bowleyana HOM05D002332 ORTHO05D002509 1.6e-08 63.5 55 52.7
HanXRQChr16g0511391 Helianthus annuus HOM05D002332 ORTHO05D002509 2.7e-08 62.8 57 54.4
Psat0s4552g0080 Pisum sativum HOM05D002332 ORTHO05D002509 2.7e-08 62.8 52 57.7
ECA246G3545 Erigeron canadensis HOM05D002332 ORTHO05D002509 3.6e-08 62.4 57 52.6
VMungo1383G1987 Vigna mungo HOM05D002332 ORTHO05D002509 3.6e-08 62.4 57 54.4
AUR62035333 Chenopodium quinoa HOM05D002332 ORTHO05D002509 4.7e-08 62.0 52 51.9
AUR62035906 Chenopodium quinoa HOM05D002332 ORTHO05D002509 8.0e-08 61.2 52 50.0
TPR.G23391 Trifolium pratense HOM05D002332 ORTHO05D002509 8.0e-08 61.2 52 57.7
Atru.chr13.711 Acer truncatum HOM05D002332 ORTHO05D002509 1.0e-07 60.8 50 62.0
MELO3C016764.2 Cucumis melo HOM05D002332 ORTHO05D002509 1.4e-07 60.5 52 57.7
CsaV3_4G034460 Cucumis sativus L. HOM05D002332 ORTHO05D002509 1.4e-07 60.5 52 57.7
SHI08262 Sapria himalayana HOM05D002332 ORTHO05D002509 3.0e-07 59.3 53 56.6
CDE05G3079 Ceratophyllum demersum HOM05D002332 ORTHO05D002509 4.0e-07 58.9 50 52.0
PGR031G1323 Punica granatum HOM05D002332 ORTHO05D002509 4.0e-07 58.9 52 51.9
Ciclev10001126m.g Citrus clementina HOM05D002332 ORTHO05D002509 5.2e-07 58.5 52 53.8
Lsat_1_v5_gn_6_115620 Lactuca sativa HOM05D002332 ORTHO05D002509 6.7e-07 58.2 57 49.1
Lalb_Chr17g0336781 Lupinus albus HOM05D002332 ORTHO05D002509 6.7e-07 58.2 52 53.8
Aa31LG4G17610 Aethionema arabicum HOM05D002332 ORTHO05D002509 8.8e-07 57.8 55 56.4
Ah.13g071810 Amaranthus hybridus HOM05D002332 ORTHO05D002509 8.8e-07 57.8 52 46.2
HPP92_010732 Vanilla planifolia HOM05D002332 ORTHO05D002509 8.8e-07 57.8 52 48.1
Aa31LG8G4250 Aethionema arabicum HOM05D002332 ORTHO05D002509 1.2e-06 57.4 56 48.2
BcaC07g39390 Brassica carinata HOM05D002332 ORTHO05D002509 1.5e-06 57.0 54 53.7
C08p24150 Brassica napus HOM05D002332 ORTHO05D002509 1.5e-06 57.0 54 53.7
BolC8t50036H Brassica oleracea HOM05D002332 ORTHO05D002509 1.5e-06 57.0 54 53.7
Sc02g0007250 Simmondsia chinensis HOM05D002332 ORTHO05D002509 1.5e-06 57.0 52 51.9
C02p35790 Brassica napus HOM05D002332 ORTHO05D002509 2.0e-06 56.6 58 50.0
C05p13900 Brassica napus HOM05D002332 ORTHO05D002509 2.0e-06 56.6 54 53.7
Sed0026906 Sechium edule HOM05D002332 ORTHO05D002509 2.0e-06 56.6 52 53.8
Ca_13862_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 2.6e-06 56.2 79 41.8
Ah.13g075040 Amaranthus hybridus HOM05D002332 ORTHO05D002509 3.3e-06 55.8 70 40.0
ATR0021G051 Amborella trichopoda HOM05D002332 ORTHO05D002509 3.3e-06 55.8 53 52.8
Lsat_1_v5_gn_4_109941 Lactuca sativa HOM05D002332 ORTHO05D002509 3.3e-06 55.8 47 55.3
Ca_06907_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 4.4e-06 55.5 79 41.8
BcaC09g49926 Brassica carinata HOM05D002332 ORTHO05D002509 5.7e-06 55.1 54 53.7
A01p24930 Brassica napus HOM05D002332 ORTHO05D002509 5.7e-06 55.1 54 53.7
C01p31140 Brassica napus HOM05D002332 ORTHO05D002509 5.7e-06 55.1 54 53.7
BolC1t03049H Brassica oleracea HOM05D002332 ORTHO05D002509 5.7e-06 55.1 54 53.7
BraA01t02404Z Brassica rapa HOM05D002332 ORTHO05D002509 5.7e-06 55.1 54 53.7
MSTRG.25083 Avicennia marina HOM05D002332 ORTHO05D002509 7.5e-06 54.7 38 60.5
Ca_06913_v3 Cicer arietinum L. HOM05D002332 ORTHO05D002509 9.7e-06 54.3 79 41.8


User provided reference genes

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