Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 7.4e-231 803.5 404 100.0
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 4.1e-205 718.0 403 90.3
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 5.4e-173 611.3 403 78.4
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.8e-160 569.7 397 76.6
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 5.7e-159 564.7 388 74.7
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 3.3e-154 548.9 390 73.8
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 3.3e-154 548.9 402 72.1
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 9.5e-154 547.4 398 73.4
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 2.8e-153 545.8 402 71.6
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 1.8e-152 543.1 400 71.2
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 1.8e-152 543.1 404 69.6
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 3.1e-152 542.3 384 74.0
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 4.4e-151 538.5 394 71.1
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 1.7e-150 536.6 396 70.2
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.7e-150 536.6 416 67.8
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 4.9e-150 535.0 389 73.0
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 6.4e-150 534.6 330 80.9
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 8.3e-150 534.3 402 71.4
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 1.9e-149 533.1 366 75.1
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 2.4e-149 532.7 401 69.1
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.2e-149 532.3 403 69.7
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 3.2e-149 532.3 389 72.0
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 1.2e-148 530.4 346 74.9
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 1.6e-148 530.0 384 71.4
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 2.7e-148 529.3 383 71.3
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 3.5e-148 528.9 361 74.2
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 3.5e-148 528.9 361 74.2
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 3.5e-148 528.9 380 73.4
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 7.8e-148 527.7 375 72.3
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.0e-147 527.3 387 70.5
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 1.3e-147 526.9 383 71.3
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 2.3e-147 526.2 404 68.3
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 3.0e-147 525.8 389 70.2
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 3.0e-147 525.8 387 70.3
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.1e-146 523.9 415 67.7
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 1.5e-146 523.5 397 68.5
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 1.5e-146 523.5 362 73.5
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 1.9e-146 523.1 404 68.8
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 1.9e-146 523.1 411 67.6
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 1.9e-146 523.1 338 78.1
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 2.5e-146 522.7 419 67.3
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 9.5e-146 520.8 337 77.7
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 1.2e-145 520.4 423 66.2
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 1.6e-145 520.0 329 76.9
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 2.8e-145 519.2 382 70.4
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 6.2e-145 518.1 393 67.9
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 8.1e-145 517.7 381 70.3
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 1.4e-144 516.9 416 66.8
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 1.8e-144 516.5 429 65.3
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 1.8e-144 516.5 395 67.8
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 5.8e-143 511.5 381 70.9
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 1.3e-142 510.4 364 72.3
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 2.2e-142 509.6 339 74.9
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 3.7e-142 508.8 394 70.8
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 6.4e-142 508.1 396 67.7
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 8.3e-142 507.7 370 70.3
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 9.2e-141 504.2 296 84.5
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 9.2e-141 504.2 331 76.1
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 9.2e-141 504.2 385 68.8
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 1.6e-140 503.4 404 67.8
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 4.6e-140 501.9 333 75.1
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 1.0e-139 500.7 407 64.6
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 2.3e-139 499.6 526 55.9
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 6.6e-139 498.0 399 66.2
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 4.0e-136 488.8 350 70.0
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 3.4e-135 485.7 414 63.5
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 2.2e-134 483.0 398 65.8
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 2.9e-134 482.6 360 66.7
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 6.4e-134 481.5 364 66.8
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 6.4e-134 481.5 364 66.8
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 3.2e-133 479.2 334 70.7
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 5.4e-133 478.4 329 73.3
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 7.1e-133 478.0 364 65.7
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 9.2e-133 477.6 363 65.3
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 2.1e-132 476.5 363 66.7
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 1.0e-131 474.2 353 67.1
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 1.0e-131 474.2 396 62.9
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 1.3e-131 473.8 369 65.6
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 1.3e-131 473.8 375 66.4
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 1.3e-131 473.8 530 53.0
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 1.7e-131 473.4 363 66.4
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 1.7e-131 473.4 351 67.8
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 2.3e-131 473.0 396 62.9
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 1.5e-130 470.3 324 77.8
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 3.3e-130 469.2 390 62.6
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 9.6e-130 467.6 388 64.4
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 6.9e-128 461.5 332 68.7
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 6.9e-128 461.5 397 63.2
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 6.4e-126 454.9 360 65.6
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 1.9e-125 453.4 360 65.3
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 2.4e-125 453.0 357 64.4
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 2.4e-125 453.0 360 65.0
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 2.4e-125 453.0 360 65.0
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 1.2e-124 450.7 403 62.3
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 1.2e-124 450.7 360 63.3
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 2.7e-124 449.5 335 69.6
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 6.0e-124 448.4 360 63.9
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 4.3e-122 442.2 402 61.4
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 1.7e-118 430.3 364 62.9
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 4.6e-116 422.2 451 55.9
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 1.3e-115 420.6 411 55.0
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 9.6e-114 414.5 306 68.0
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.5e-111 407.1 291 71.1
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 2.4e-109 399.8 310 64.8
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 4.2e-109 399.1 215 88.4
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 4.2e-109 399.1 214 88.8
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 2.7e-108 396.4 316 64.9
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.3e-107 394.0 213 88.3
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 2.4e-104 383.3 327 64.2
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 2.2e-102 376.7 263 69.6
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 1.8e-99 367.1 547 43.0
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 6.3e-97 358.6 261 67.0
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 3.1e-96 356.3 270 66.3
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 2.1e-92 343.6 305 63.6
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 3.9e-91 339.3 402 54.0
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 3.3e-90 336.3 265 67.9
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 4.8e-89 332.4 196 79.6
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 2.4e-88 330.1 283 66.8
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 7.2e-85 318.5 214 73.8
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.7e-81 307.4 215 68.8
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.8e-81 306.6 292 54.8
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 2.2e-73 280.4 217 63.6
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 3.7e-73 279.6 249 64.3
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 2.3e-43 180.6 242 42.6
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 6.4e-41 172.6 247 38.1
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 1.1e-29 135.2 287 33.1
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.4e-27 128.3 120 58.3
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 7.5e-26 122.5 176 42.6
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 9.2e-24 115.5 88 68.2
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 1.6e-23 114.8 130 51.5
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 4.0e-19 100.1 118 50.0
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 6.8e-19 99.4 118 50.8
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.5e-18 98.2 69 65.2
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.6e-18 97.4 74 62.2
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.6e-18 97.4 74 62.2
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.4e-18 97.1 113 46.0
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.4e-18 96.7 74 59.5
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 9.9e-18 95.5 136 43.4
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 1.3e-17 95.1 136 41.2
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.2e-17 94.4 74 58.1
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.4e-17 92.8 74 56.8
MCO09G146 Micromonas commoda HOM05D004930 ORTHO05D270306 1.7e-14 84.7 235 26.8
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 1.1e-13 82.0 49 83.7
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 5.6e-13 79.7 156 36.5
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 7.3e-13 79.3 166 31.9
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 8.1e-12 75.9 166 31.3
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 2.4e-11 74.3 170 31.2


User provided reference genes

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