Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 2.4e-47 191.8 97 100.0
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 9.0e-18 93.6 47 89.4
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.0e-17 92.4 53 81.1
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 3.4e-17 91.7 52 78.8
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.7e-16 89.4 52 76.9
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 1.7e-16 89.4 80 57.5
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 2.2e-16 89.0 56 75.0
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 3.8e-16 88.2 52 75.0
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 3.8e-16 88.2 46 82.6
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 4.9e-16 87.8 58 69.0
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 6.5e-16 87.4 52 76.9
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 6.5e-16 87.4 52 75.0
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 6.5e-16 87.4 52 75.0
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 6.5e-16 87.4 52 75.0
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 6.5e-16 87.4 52 75.0
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 6.5e-16 87.4 52 75.0
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 6.5e-16 87.4 52 75.0
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 6.5e-16 87.4 52 75.0
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 6.5e-16 87.4 52 75.0
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 6.5e-16 87.4 52 75.0
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 6.5e-16 87.4 52 75.0
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 6.5e-16 87.4 52 75.0
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 6.5e-16 87.4 46 87.0
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 6.5e-16 87.4 46 87.0
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 6.5e-16 87.4 80 55.0
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 6.5e-16 87.4 52 76.9
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 6.5e-16 87.4 46 87.0
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 8.4e-16 87.0 57 70.2
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 8.4e-16 87.0 63 61.9
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 8.4e-16 87.0 52 75.0
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 1.1e-15 86.7 52 73.1
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 1.1e-15 86.7 52 75.0
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 1.1e-15 86.7 52 73.1
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 1.1e-15 86.7 52 73.1
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 1.1e-15 86.7 52 75.0
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 1.1e-15 86.7 52 75.0
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 1.1e-15 86.7 46 84.8
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 1.1e-15 86.7 55 72.7
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 1.1e-15 86.7 52 76.9
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 1.1e-15 86.7 52 76.9
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 1.1e-15 86.7 96 52.1
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 1.1e-15 86.7 52 73.1
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 1.4e-15 86.3 52 75.0
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 1.4e-15 86.3 52 75.0
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 1.4e-15 86.3 52 75.0
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 1.4e-15 86.3 52 75.0
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 1.4e-15 86.3 52 75.0
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 1.4e-15 86.3 52 76.9
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 1.4e-15 86.3 56 75.0
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 2.5e-15 85.5 52 75.0
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 2.5e-15 85.5 52 75.0
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 2.5e-15 85.5 52 76.9
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 2.5e-15 85.5 60 68.3
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 2.5e-15 85.5 52 71.2
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 2.5e-15 85.5 46 82.6
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 3.2e-15 85.1 50 74.0
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 3.2e-15 85.1 46 78.3
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 3.2e-15 85.1 52 78.8
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 4.2e-15 84.7 46 82.6
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 5.5e-15 84.3 46 80.4
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 5.5e-15 84.3 46 80.4
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 5.5e-15 84.3 53 71.7
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 5.5e-15 84.3 51 74.5
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 7.1e-15 84.0 46 82.6
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 7.1e-15 84.0 52 73.1
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 7.1e-15 84.0 52 73.1
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 9.3e-15 83.6 52 73.1
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 9.3e-15 83.6 52 73.1
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 9.3e-15 83.6 52 73.1
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 1.6e-14 82.8 50 74.0
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 1.6e-14 82.8 52 71.2
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 1.6e-14 82.8 52 75.0
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.1e-14 82.4 56 67.9
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 2.1e-14 82.4 56 67.9
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 2.1e-14 82.4 54 70.4
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 2.7e-14 82.0 52 71.2
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 3.5e-14 81.6 52 73.1
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 3.5e-14 81.6 47 76.6
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 3.5e-14 81.6 46 82.6
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 4.6e-14 81.3 48 75.0
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 7.9e-14 80.5 52 71.2
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.0e-13 80.1 52 71.2
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.0e-13 80.1 52 71.2
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.5e-12 76.3 52 69.2
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 1.5e-12 76.3 51 68.6
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 1.5e-12 76.3 46 76.1
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 3.3e-12 75.1 43 76.7
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 3.3e-12 75.1 55 58.2
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 9.7e-12 73.6 46 69.6
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 1.6e-11 72.8 52 71.2
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 2.2e-11 72.4 42 76.2
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.2e-11 72.4 46 76.1
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 4.8e-11 71.2 52 59.6
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 6.3e-11 70.9 51 62.7
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 1.1e-10 70.1 46 69.6
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 1.1e-10 70.1 46 69.6
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 1.1e-10 70.1 52 67.3
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 1.4e-10 69.7 46 67.4
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 1.4e-10 69.7 52 65.4
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 3.1e-10 68.6 46 63.0
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 4.1e-10 68.2 52 63.5
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 4.1e-10 68.2 52 67.3
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 6.9e-10 67.4 31 90.3
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 9.0e-10 67.0 87 46.0
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 9.0e-10 67.0 40 70.0
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.2e-09 66.6 45 68.9
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 1.5e-09 66.2 57 59.6
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.5e-09 66.2 64 53.1
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.0e-09 65.9 51 64.7
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 4.5e-09 64.7 54 59.3
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 1.3e-08 63.2 31 80.6
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 1.3e-08 63.2 47 70.2
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 1.7e-08 62.8 57 49.1
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 2.9e-08 62.0 31 83.9
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 8.5e-08 60.5 32 84.4
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 9.3e-07 57.0 46 54.3
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 9.3e-07 57.0 31 77.4
AagrBONN_evm.TU.Sc2ySwM_228.3660 Anthoceros agrestis HOM05D006514 ORTHO05D008138 6.1e-06 54.3 74 43.2
Os07g0447200 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 7.9e-06 53.9 31 67.7
Pp3c4_25750 Physcomitrium patens HOM05D006514 ORTHO05D008138 7.9e-06 53.9 43 55.8


User provided reference genes

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