Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 4.3e-220 767.7 385 100.0
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 3.6e-179 631.7 390 82.3
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 1.1e-167 593.6 391 78.0
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 2.5e-167 592.4 385 78.4
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 4.6e-166 588.2 379 79.2
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 2.3e-165 585.9 390 76.7
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 2.5e-164 582.4 391 77.2
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 4.3e-164 581.6 386 76.2
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 1.8e-162 576.2 385 75.3
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 4.1e-162 575.1 396 76.3
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 3.4e-161 572.0 385 75.6
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 5.9e-161 571.2 381 75.6
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 2.2e-160 569.3 361 78.7
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 2.9e-160 568.9 388 74.5
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 3.8e-160 568.5 386 75.6
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 6.5e-160 567.8 379 73.6
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 1.1e-159 567.0 372 76.9
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 1.1e-159 567.0 383 75.7
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 1.4e-159 566.6 338 81.4
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.4e-159 566.6 387 75.2
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 3.2e-159 565.5 385 74.0
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 7.2e-159 564.3 394 73.4
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 1.6e-158 563.1 389 74.0
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 1.6e-158 563.1 335 81.5
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 2.1e-158 562.8 384 74.7
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 3.6e-158 562.0 385 74.0
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.3e-157 560.1 395 71.4
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.3e-157 560.1 389 73.8
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 1.8e-157 559.7 319 85.6
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 2.3e-157 559.3 395 71.4
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 2.3e-157 559.3 318 84.6
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 6.7e-157 557.8 378 74.1
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 8.7e-157 557.4 384 74.7
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 8.7e-157 557.4 380 73.2
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 8.7e-157 557.4 389 73.5
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 1.1e-156 557.0 390 72.6
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 1.1e-156 557.0 389 72.2
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 3.3e-156 555.4 319 83.7
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 3.3e-156 555.4 324 81.5
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 3.3e-156 555.4 390 74.1
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 4.3e-156 555.1 343 79.0
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 5.7e-156 554.7 394 71.1
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 7.4e-156 554.3 385 73.5
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 9.7e-156 553.9 343 79.0
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 9.7e-156 553.9 376 73.1
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 1.3e-155 553.5 383 73.1
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 1.6e-155 553.1 356 75.8
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 2.8e-155 552.4 324 80.9
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 3.7e-155 552.0 398 69.8
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 8.2e-155 550.8 318 82.4
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 1.8e-154 549.7 386 73.1
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 2.4e-154 549.3 386 72.8
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 3.1e-154 548.9 380 74.7
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 5.3e-154 548.1 384 72.1
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 5.3e-154 548.1 390 72.3
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 2.0e-153 546.2 318 82.7
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 2.6e-153 545.8 377 74.5
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 5.9e-153 544.7 338 77.5
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 1.3e-152 543.5 395 71.1
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 1.3e-152 543.5 322 81.4
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 5.0e-152 541.6 386 71.0
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 6.5e-152 541.2 388 73.2
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 1.9e-151 539.7 391 71.1
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 2.5e-151 539.3 322 80.4
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 3.2e-151 538.9 316 81.6
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 7.2e-151 537.7 322 80.4
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 1.6e-150 536.6 365 75.9
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 1.6e-150 536.6 392 70.4
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 2.1e-150 536.2 319 80.6
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 2.1e-150 536.2 319 80.6
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 2.1e-150 536.2 319 80.6
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 2.1e-150 536.2 366 73.5
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 6.1e-150 534.6 322 79.8
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 2.3e-149 532.7 341 77.4
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 3.9e-149 531.9 320 80.0
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 3.9e-149 531.9 385 71.4
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 1.7e-147 526.6 318 79.6
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 2.8e-147 525.8 373 72.4
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 2.4e-146 522.7 320 78.8
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 3.1e-146 522.3 416 64.9
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 9.1e-146 520.8 401 67.6
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 1.6e-142 510.0 276 88.8
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 3.6e-142 508.8 392 66.6
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 1.3e-139 500.4 389 67.1
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.5e-135 486.9 343 73.8
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 4.0e-133 478.8 276 82.6
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 9.7e-132 474.2 268 85.8
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 2.9e-128 462.6 389 64.5
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 8.5e-128 461.1 267 83.5
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 5.2e-125 451.8 259 85.7
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 2.8e-123 446.0 320 66.2
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 5.0e-120 435.3 314 64.0
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 4.2e-119 432.2 310 73.9
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 4.2e-119 432.2 268 76.1
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 1.8e-114 416.8 344 59.0
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 1.9e-111 406.8 354 56.5
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 3.0e-109 399.4 285 71.9
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 2.9e-107 392.9 267 72.7
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 4.9e-107 392.1 272 72.1
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 1.0e-104 384.4 290 69.3
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 6.6e-104 381.7 291 70.1
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 1.5e-92 344.0 229 72.9
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 1.5e-84 317.4 269 66.5
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 1.1e-77 294.7 334 51.8
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 2.2e-75 287.0 320 43.8
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 2.2e-75 287.0 320 43.8
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 7.8e-73 278.5 179 74.9
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 1.0e-72 278.1 311 46.3
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 2.8e-70 270.0 177 73.4
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 1.4e-69 267.7 330 43.9
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 2.4e-69 266.9 150 86.7
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 2.1e-65 253.8 166 78.9
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 9.0e-61 238.4 130 88.5
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 7.4e-39 165.6 440 30.9
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.2e-36 158.3 91 79.1
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-33 147.5 109 65.1
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 2.8e-30 137.1 79 83.5
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 3.7e-30 136.7 85 72.9
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.4e-29 134.8 90 73.3
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 3.7e-22 110.2 106 50.9
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 1.8e-21 107.8 105 54.3
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 1.5e-18 98.2 74 68.9
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 2.0e-15 87.8 54 74.1
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 2.6e-15 87.4 58 77.6
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 5.7e-15 86.3 110 50.0
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 7.5e-15 85.9 59 67.8
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 7.5e-15 85.9 59 67.8
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 1.3e-14 85.1 58 67.2
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 4.8e-14 83.2 47 85.1
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 5.3e-13 79.7 95 49.5
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 9.1e-13 79.0 326 25.8
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 4.5e-12 76.6 300 27.7
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 2.2e-11 74.3 117 46.2
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 1.1e-10 72.0 54 66.7
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 1.9e-10 71.2 108 41.7
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 5.5e-10 69.7 348 25.9
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 9.4e-10 68.9 108 44.4
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 9.4e-10 68.9 75 50.7
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 9.4e-10 68.9 294 27.2
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 2.7e-09 67.4 365 24.7
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 3.6e-09 67.0 282 28.4
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 4.7e-09 66.6 352 24.1
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 8.0e-09 65.9 280 25.7
Medtr5g027220 Medicago truncatula HOM05D001237 ORTHO05D009110 1.0e-08 65.5 343 23.9
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 1.4e-08 65.1 294 25.9
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 1.4e-08 65.1 312 25.3
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 1.8e-08 64.7 42 76.2
CANSAT25G2402 Cannabis sativa HOM05D001237 ORTHO05D009110 3.0e-08 63.9 295 25.1
Lj2g0015654 Lotus japonicus HOM05D001237 ORTHO05D009110 3.0e-08 63.9 339 24.8
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 4.0e-08 63.5 80 46.2
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 6.8e-08 62.8 288 27.1
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 8.8e-08 62.4 296 25.3
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.2e-07 62.0 352 25.6
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 1.2e-07 62.0 312 26.6
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 2.0e-07 61.2 290 25.2
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 2.6e-07 60.8 287 26.1
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 3.4e-07 60.5 340 24.7
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 4.4e-07 60.1 280 25.4
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 5.7e-07 59.7 283 24.7
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 5.7e-07 59.7 280 25.4
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 7.5e-07 59.3 284 26.1
GSVIVG01022633001 Vitis vinifera HOM05D001237 ORTHO05D009110 9.8e-07 58.9 359 24.8
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 1.7e-06 58.2 276 25.4
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 1.7e-06 58.2 337 23.7
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 2.8e-06 57.4 280 24.6
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 2.8e-06 57.4 299 24.1


User provided reference genes

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