Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 3.3e-81 305.8 275 100.0
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.9e-52 210.3 278 78.1
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.5e-49 200.7 278 66.2
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.0e-45 188.0 282 72.7
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 2.3e-42 176.8 280 66.1
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 2.5e-41 173.3 277 66.4
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 2.1e-40 170.2 279 75.6
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 3.7e-40 169.5 278 68.3
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 6.3e-40 168.7 279 76.0
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 1.1e-39 167.9 278 73.4
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.5e-38 164.1 277 69.0
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 2.0e-38 163.7 277 70.4
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.3e-37 161.0 279 69.9
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 2.9e-37 159.8 274 73.4
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 3.8e-37 159.5 280 70.0
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 5.0e-37 159.1 279 72.8
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 6.5e-37 158.7 277 72.9
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 6.5e-37 158.7 273 62.3
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 1.4e-36 157.5 280 68.9
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.5e-36 156.8 277 63.9
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 5.5e-36 155.6 279 66.7
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 5.5e-36 155.6 280 73.9
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.2e-35 154.5 275 75.3
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.1e-35 153.7 186 67.7
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 3.5e-35 152.9 276 71.4
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 3.5e-35 152.9 278 68.3
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 3.5e-35 152.9 187 70.6
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 4.6e-35 152.5 201 64.7
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 6.1e-35 152.1 279 70.3
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 1.0e-34 151.4 204 75.0
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 3.0e-34 149.8 279 66.7
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 3.3e-33 146.4 277 71.8
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 7.4e-33 145.2 277 70.8
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 2.2e-32 143.7 263 72.6
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.7e-32 142.9 279 69.2
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 4.8e-32 142.5 211 61.1
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 5.3e-31 139.0 200 75.0
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 5.3e-31 139.0 200 75.0
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 1.2e-30 137.9 277 69.7
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 2.0e-30 137.1 300 62.7
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 2.6e-30 136.7 204 73.0
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 5.9e-30 135.6 281 68.0
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 1.3e-29 134.4 281 69.4
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 2.9e-29 133.3 203 75.4
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.9e-28 130.6 273 50.9
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 2.5e-28 130.2 274 59.1
Glyma.08G186200 Glycine max HOM05D003347 ORTHO05D003821 2.5e-28 130.2 280 68.6
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 4.2e-28 129.4 283 69.3
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 9.4e-28 128.3 280 65.7
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 2.1e-27 127.1 204 71.6
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 2.7e-27 126.7 168 79.8
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 3.6e-27 126.3 278 67.3
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 1.4e-26 124.4 284 58.5
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 3.9e-26 122.9 274 64.6
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 1.5e-25 120.9 162 84.6
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 2.5e-25 120.2 306 55.2
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 7.4e-25 118.6 236 71.2
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 7.4e-25 118.6 204 68.6
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 1.7e-24 117.5 203 62.6
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 3.7e-24 116.3 204 71.6
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 2.4e-23 113.6 300 61.7
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 3.1e-23 113.2 203 68.0
Glyma.15G046600 Glycine max HOM05D003347 ORTHO05D003821 6.9e-23 112.1 280 65.7
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 9.1e-23 111.7 205 65.9
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.6e-22 110.2 201 56.7
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 3.4e-22 109.8 307 55.7
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 3.4e-22 109.8 284 60.2
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 3.8e-21 106.3 200 68.0
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 8.5e-21 105.1 167 77.8
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 1.1e-20 104.8 163 73.0
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 1.4e-20 104.4 280 50.7
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 1.4e-20 104.4 275 55.3
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 3.2e-20 103.2 157 61.8
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 5.5e-20 102.4 199 56.8
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 7.2e-20 102.1 199 59.3
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 7.2e-20 102.1 277 58.5
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 1.6e-19 100.9 313 55.9
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 1.0e-18 98.2 276 45.3
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.8e-18 97.4 177 57.6
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 6.7e-18 95.5 211 52.6
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 6.7e-18 95.5 379 49.6
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 6.7e-18 95.5 249 48.2
FAN25G2408 Fragaria x ananassa HOM05D003347 ORTHO05D003821 8.8e-18 95.1 301 62.1
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 8.8e-18 95.1 162 76.5
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 8.8e-18 95.1 74 75.7
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 1.5e-17 94.4 194 54.1
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 1.5e-17 94.4 276 62.3
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.5e-17 94.4 185 74.1
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 2.0e-17 94.0 238 70.6
RcHm_v2.0_Chr5g0049401 Rosa chinensis HOM05D003347 ORTHO05D003821 2.0e-17 94.0 205 64.4
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 3.3e-17 93.2 163 66.3
FAN16G0856 Fragaria x ananassa HOM05D003347 ORTHO05D003821 4.4e-17 92.8 305 56.4
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 4.4e-17 92.8 160 63.1
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 4.4e-17 92.8 191 55.5
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 7.4e-17 92.0 211 52.1
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 2.8e-16 90.1 196 55.6
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 2.8e-16 90.1 272 56.6
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 2.8e-16 90.1 74 74.3
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 3.7e-16 89.7 192 58.3
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 4.8e-16 89.4 204 50.0
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 8.2e-16 88.6 164 66.5
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 2.4e-15 87.0 211 60.7
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 3.1e-15 86.7 196 51.5
CiPaw.06G147300 Carya illinoinensis HOM05D003347 ORTHO05D003821 3.1e-15 86.7 193 62.2
FAN21G3803 Fragaria x ananassa HOM05D003347 ORTHO05D003821 3.1e-15 86.7 205 65.4
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 3.1e-15 86.7 275 60.0
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 3.1e-15 86.7 133 84.2
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 5.3e-15 85.9 211 53.1
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 7.0e-15 85.5 279 55.9
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 9.1e-15 85.1 69 73.9
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 9.1e-15 85.1 77 67.5
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 9.1e-15 85.1 163 74.2
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 9.1e-15 85.1 104 57.7
vmacro12779 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 9.1e-15 85.1 108 71.3
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 1.2e-14 84.7 74 64.9
FvH4_3g26951 Fragaria vesca HOM05D003347 ORTHO05D003821 1.2e-14 84.7 303 60.1
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 1.2e-14 84.7 159 74.8
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 2.6e-14 83.6 187 57.2
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 7.7e-14 82.0 160 70.0
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 1.0e-13 81.6 161 62.7
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.0e-13 81.6 159 73.0
vmacro19891 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 2.2e-13 80.5 364 47.8
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 3.8e-13 79.7 202 48.5
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 5.0e-13 79.3 115 51.3
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.1e-12 78.2 158 55.7
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 1.1e-12 78.2 83 60.2
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 1.5e-12 77.8 88 60.2
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 1.9e-12 77.4 172 59.3
TWI23G0580 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.9e-12 77.4 193 64.2
Cpa.g.sc113.60 Carica papaya HOM05D003347 ORTHO05D003821 3.2e-12 76.6 236 60.6
FAN11G2552 Fragaria x ananassa HOM05D003347 ORTHO05D003821 4.2e-12 76.3 306 58.5
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 4.2e-12 76.3 186 61.8
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 5.5e-12 75.9 196 48.5
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 5.5e-12 75.9 78 56.4
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 5.5e-12 75.9 157 68.8
Thhalv10014512m.g Eutrema salsugineum HOM05D012923 ORTHO05D014747 1.2e-11 74.7 147 44.9
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.2e-11 74.7 134 75.4
Os10g0214400 Oryza sativa ssp. japonica HOM05D003347 ORTHO05D003821 1.6e-11 74.3 176 49.4
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.6e-11 73.2 165 56.4
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 4.7e-11 72.8 217 54.8
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 6.1e-11 72.4 212 53.3
Aa31LG11G7390 Aethionema arabicum HOM05D012923 ORTHO05D014747 8.0e-11 72.0 195 43.6
EL10Ac4g09689 Beta vulgaris HOM05D003347 ORTHO05D003821 8.0e-11 72.0 261 41.4
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 8.0e-11 72.0 176 51.1
C05p09260 Brassica napus HOM05D003347 ORTHO05D003821 1.0e-10 71.6 192 53.1
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 1.0e-10 71.6 175 52.6
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 1.8e-10 70.9 175 69.7
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 2.3e-10 70.5 67 59.7
Psat5g058160 Pisum sativum HOM05D003347 ORTHO05D003821 5.2e-10 69.3 102 47.1
SalBow5G2549 Salvia bowleyana HOM05D003347 ORTHO05D003821 2.0e-09 67.4 185 53.0
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 2.0e-09 67.4 85 52.9
Sabra01G0163000 Salix brachista HOM05D003347 ORTHO05D003821 2.6e-09 67.0 163 71.8
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 3.3e-09 66.6 273 50.2
Aa31LG1G3970 Aethionema arabicum HOM05D003347 ORTHO05D003821 4.4e-09 66.2 134 61.2
arahy.Tifrunner.gnm1.ann1.X7GISI Arachis hypogaea HOM05D003347 ORTHO05D003821 7.5e-09 65.5 77 57.1
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 7.5e-09 65.5 137 41.6
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 9.7e-09 65.1 125 40.0
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 9.7e-09 65.1 72 54.2
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.3e-08 64.7 108 47.2
Psat5g058080 Pisum sativum HOM05D003347 ORTHO05D003821 1.7e-08 64.3 73 52.1
COL.COLO4_17865 Corchorus olitorius HOM05D003347 ORTHO05D003821 2.2e-08 63.9 116 46.6
MD08G1229300 Malus domestica HOM05D003347 ORTHO05D003821 3.7e-08 63.2 146 54.8
Cc02_g22500 Coffea canephora HOM05D003347 ORTHO05D003821 6.3e-08 62.4 115 70.4
FAN19G3034 Fragaria x ananassa HOM05D003347 ORTHO05D003821 6.3e-08 62.4 73 57.5
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 6.3e-08 62.4 273 49.5
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 6.3e-08 62.4 81 51.9
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 6.3e-08 62.4 276 47.1
AL6G23960 Arabidopsis lyrata HOM05D012923 ORTHO05D014747 2.4e-07 60.5 167 36.5
AT5G13340 Arabidopsis thaliana HOM05D012923 ORTHO05D014747 5.3e-07 59.3 167 34.7
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 5.3e-07 59.3 115 40.9
Sp1g09610 Schrenkiella parvula HOM05D003347 ORTHO05D003821 7.0e-07 58.9 249 57.8
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 9.1e-07 58.5 178 50.6
Sabra19G0015000 Salix brachista HOM05D003347 ORTHO05D003821 2.7e-06 57.0 52 61.5
Nitab4.5_0000816g0010 Nicotiana tabacum HOM05D003347 ORTHO05D003821 5.9e-06 55.8 231 48.5


User provided reference genes

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